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run_metadata

64 rows where experiment.library_layout = "PAIRED", experiment.library_source = "TRANSCRIPTOMIC" and experiment.platform = "ION_TORRENT"

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tissue_curation_coarse 1

tissue_curation 1

technology 1

experiment.platform 1

  • ION_TORRENT · 64 ✖

experiment.library_strategy 1

experiment.library_source 1

  • TRANSCRIPTOMIC · 64 ✖

experiment.library_selection 1

experiment.library_layout 1

  • PAIRED · 64 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
31610 31610 SRR28480662 SRX24083226 SRS20872880 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 10bp   zebrafish C11 65.25% Cl 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 10bp sccp22 sccp22 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_010.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 115996940.0 1032044.0 IonXpress 010.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.40 A:27435635;C:30752569;G:30166368;T:27642368;N:0 112       27435635 30752569 30166368 27642368 0 SRX24083226 SRS20872880 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31611 31611 SRR28480663 SRX24083225 SRS20872879 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 100bp   zebrafish C11 65.25% Cl 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 100bp sccp21 sccp21 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_009.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 93043813.0 828468.0 IonXpress 009.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.31 A:21877681;C:24819986;G:24178228;T:22167918;N:0 112       21877681 24819986 24178228 22167918 0 SRX24083225 SRS20872879 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31612 31612 SRR28480664 SRX24083224 SRS20872878 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 1   zebrafish control 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 1 CK1 CK1 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_008.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 103344731.0 919663.0 IonXpress 008.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.37 A:24335657;C:27548197;G:27080320;T:24380557;N:0 112       24335657 27548197 27080320 24380557 0 SRX24083224 SRS20872878 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31613 31613 SRR28480665 SRX24083223 SRS20872877 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 8   zebrafish control 8   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 8|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 8 CK8 CK8 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_064.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 1248739.0 12382.0 IonXpress 064.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:100.85 A:343287;C:282561;G:276446;T:346445;N:0 100       343287 282561 276446 346445 0 SRX24083223 SRS20872877 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31614 31614 SRR28480666 SRX24083222 SRS20872875 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 0.0001bp   zebrafish C11H18Cl6 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 0.0001bp sccp87 sccp87 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_063.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 85118924.0 764363.0 IonXpress 063.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.36 A:20271638;C:22447929;G:22188225;T:20211132;N:0 111       20271638 22447929 22188225 20211132 0 SRX24083222 SRS20872875 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31615 31615 SRR28480667 SRX24083221 SRS20872876 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 0.001bp   zebrafish C11H18Cl6 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 0.001bp sccp86 sccp86 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_062.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 100020739.0 887080.0 IonXpress 062.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.75 A:23887649;C:26321654;G:25886408;T:23925028;N:0 112       23887649 26321654 25886408 23925028 0 SRX24083221 SRS20872876 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31616 31616 SRR28480668 SRX24083220 SRS20872873 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 0.01bp   zebrafish C11H18Cl6 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 0.01bp sccp85 sccp85 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_061.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 97468627.0 871705.0 IonXpress 061.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.81 A:23208366;C:25629536;G:25319083;T:23311642;N:0 111       23208366 25629536 25319083 23311642 0 SRX24083220 SRS20872873 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31617 31617 SRR28480669 SRX24083219 SRS20872874 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 0.0001bp   zebrafish C10 65.02% Cl 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 0.0001bp sccp17 sccp17 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_007.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 98520761.0 872099.0 IonXpress 007.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.97 A:23295910;C:26225214;G:25736839;T:23262798;N:0 112       23295910 26225214 25736839 23262798 0 SRX24083219 SRS20872874 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31618 31618 SRR28480670 SRX24083218 SRS20872872 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 0.1bp   zebrafish C11H18Cl6 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 0.1bp sccp84 sccp84 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_060.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 101362655.0 911931.0 IonXpress 060.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.15 A:24332766;C:26520366;G:26180006;T:24329517;N:0 111       24332766 26520366 26180006 24329517 0 SRX24083218 SRS20872872 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31619 31619 SRR28480671 SRX24083217 SRS20872871 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 1bp   zebrafish C11H18Cl6 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 1bp sccp83 sccp83 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_059.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 100303496.0 903897.0 IonXpress 059.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:110.97 A:24088149;C:26263021;G:26004101;T:23948225;N:0 110       24088149 26263021 26004101 23948225 0 SRX24083217 SRS20872871 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31620 31620 SRR28480672 SRX24083216 SRS20872870 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 10bp   zebrafish C11H18Cl6 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 10bp sccp82 sccp82 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_058.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 115137934.0 1041398.0 IonXpress 058.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:110.56 A:27558871;C:30238935;G:29677704;T:27662424;N:0 110       27558871 30238935 29677704 27662424 0 SRX24083216 SRS20872870 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31621 31621 SRR28480673 SRX24083215 SRS20872868 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11H18Cl6 100bp   zebrafish C11H18Cl6 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11H18Cl6 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11H18Cl6 100bp sccp81 sccp81 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_057.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 97024081.0 870349.0 IonXpress 057.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.48 A:23039592;C:25636462;G:25229252;T:23118775;N:0 111       23039592 25636462 25229252 23118775 0 SRX24083215 SRS20872868 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31622 31622 SRR28480674 SRX24083214 SRS20872869 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 7   zebrafish control 7   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 7|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 7 CK7 CK7 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_056.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 102043702.0 904558.0 IonXpress 056.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.81 A:24197994;C:26938896;G:26614626;T:24292186;N:0 112       24197994 26938896 26614626 24292186 0 SRX24083214 SRS20872869 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31623 31623 SRR28480675 SRX24083213 SRS20872867 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 0.0001bp   zebrafish C13H20Cl8 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 0.0001bp sccp77 sccp77 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_055.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 87029779.0 773209.0 IonXpress 055.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.56 A:20625019;C:22910646;G:22761997;T:20732117;N:0 112       20625019 22910646 22761997 20732117 0 SRX24083213 SRS20872867 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31624 31624 SRR28480676 SRX24083212 SRS20872866 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 0.001bp   zebrafish C13H20Cl8 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 0.001bp sccp76 sccp76 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_054.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 110378504.0 977343.0 IonXpress 054.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.94 A:26221466;C:29150847;G:28715262;T:26290929;N:0 112       26221466 29150847 28715262 26290929 0 SRX24083212 SRS20872866 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31625 31625 SRR28480677 SRX24083211 SRS20872865 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 0.01bp   zebrafish C13H20Cl8 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 0.01bp sccp75 sccp75 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_053.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 96397023.0 855195.0 IonXpress 053.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.72 A:22971501;C:25417770;G:25009533;T:22998219;N:0 112       22971501 25417770 25009533 22998219 0 SRX24083211 SRS20872865 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31626 31626 SRR28480678 SRX24083210 SRS20872864 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 0.1bp   zebrafish C13H20Cl8 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 0.1bp sccp74 sccp74 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_052.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 95954965.0 851203.0 IonXpress 052.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.73 A:22986581;C:25153781;G:24711283;T:23103320;N:0 112       22986581 25153781 24711283 23103320 0 SRX24083210 SRS20872864 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31627 31627 SRR28480679 SRX24083209 SRS20872861 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 1bp   zebrafish C13H20Cl8 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 1bp sccp73 sccp73 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_051.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 102573446.0 908806.0 IonXpress 051.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.87 A:24644043;C:26951588;G:26384474;T:24593341;N:0 112       24644043 26951588 26384474 24593341 0 SRX24083209 SRS20872861 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31628 31628 SRR28480680 SRX24083208 SRS20872862 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 0.001bp   zebrafish C10 65.02% Cl 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 0.001bp sccp16 sccp16 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_006.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 108392278.0 960577.0 IonXpress 006.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.84 A:25539867;C:28930494;G:28352601;T:25569316;N:0 112       25539867 28930494 28352601 25569316 0 SRX24083208 SRS20872862 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31629 31629 SRR28480681 SRX24083207 SRS20872863 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 10bp   zebrafish C13H20Cl8 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 10bp sccp72 sccp72 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_050.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 3966818.0 36367.0 IonXpress 050.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:109.08 A:964317;C:1025339;G:1008928;T:968234;N:0 109       964317 1025339 1008928 968234 0 SRX24083207 SRS20872863 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31630 31630 SRR28480682 SRX24083206 SRS20872860 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13H20Cl8 100bp   zebrafish C13H20Cl8 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13H20Cl8 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13H20Cl8 100bp sccp71 sccp71 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_049.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 109404410.0 969450.0 IonXpress 049.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.85 A:25934260;C:28861104;G:28479919;T:26129127;N:0 112       25934260 28861104 28479919 26129127 0 SRX24083206 SRS20872860 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31631 31631 SRR28480683 SRX24083205 SRS20872859 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 6   zebrafish control 6   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 6|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 6 CK6 CK6 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_048.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 110491023.0 978930.0 IonXpress 048.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.87 A:26203210;C:29193121;G:28716928;T:26377764;N:0 112       26203210 29193121 28716928 26377764 0 SRX24083205 SRS20872859 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31632 31632 SRR28480684 SRX24083204 SRS20872858 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 0.0001bp   zebrafish C12H18Cl8 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 0.0001bp sccp67 sccp67 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_047.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 87051784.0 765553.0 IonXpress 047.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.71 A:20538118;C:22989270;G:22623611;T:20900785;N:0 113       20538118 22989270 22623611 20900785 0 SRX24083204 SRS20872858 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31633 31633 SRR28480685 SRX24083203 SRS20872857 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 0.001bp   zebrafish C12H18Cl8 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 0.001bp sccp66 sccp66 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_046.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 101355324.0 894473.0 IonXpress 046.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.31 A:24063826;C:26807513;G:26239594;T:24244391;N:0 113       24063826 26807513 26239594 24244391 0 SRX24083203 SRS20872857 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31634 31634 SRR28480686 SRX24083202 SRS20872856 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 0.01bp   zebrafish C12H18Cl8 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 0.01bp sccp65 sccp65 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_045.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 106816865.0 945364.0 IonXpress 045.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.99 A:25408018;C:28284679;G:27734471;T:25389697;N:0 112       25408018 28284679 27734471 25389697 0 SRX24083202 SRS20872856 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31635 31635 SRR28480687 SRX24083201 SRS20872855 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 0.1bp   zebrafish C12H18Cl8 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 0.1bp sccp64 sccp64 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_044.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 96444077.0 846020.0 IonXpress 044.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:114.00 A:23090892;C:25396368;G:24751151;T:23205666;N:0 114       23090892 25396368 24751151 23205666 0 SRX24083201 SRS20872855 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31636 31636 SRR28480688 SRX24083200 SRS20872854 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 1bp   zebrafish C12H18Cl8 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 1bp sccp63 sccp63 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_043.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 109842592.0 979956.0 IonXpress 043.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.09 A:26296605;C:28856810;G:28387647;T:26301530;N:0 112       26296605 28856810 28387647 26301530 0 SRX24083200 SRS20872854 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31637 31637 SRR28480689 SRX24083199 SRS20872853 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 10bp   zebrafish C12H18Cl8 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 10bp sccp62 sccp62 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_042.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 104749712.0 928387.0 IonXpress 042.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.83 A:24853206;C:27526121;G:27117065;T:25253320;N:0 112       24853206 27526121 27117065 25253320 0 SRX24083199 SRS20872853 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31638 31638 SRR28480690 SRX24083198 SRS20872851 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C12H18Cl8 100bp   zebrafish C12H18Cl8 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C12H18Cl8 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C12H18Cl8 100bp sccp61 sccp61 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_041.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 107104635.0 950614.0 IonXpress 041.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.67 A:25435794;C:28220207;G:27928474;T:25520160;N:0 112       25435794 28220207 27928474 25520160 0 SRX24083198 SRS20872851 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31639 31639 SRR28480691 SRX24083197 SRS20872852 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 0.01bp   zebrafish C10 65.02% Cl 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 0.01bp sccp15 sccp15 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_005.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 109950143.0 982487.0 IonXpress 005.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.91 A:25816549;C:29220009;G:28779207;T:26134378;N:0 111       25816549 29220009 28779207 26134378 0 SRX24083197 SRS20872852 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31640 31640 SRR28480692 SRX24083196 SRS20872850 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 5   zebrafish control 5   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 5 CK5 CK5 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_040.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 122039187.0 1080433.0 IonXpress 040.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.95 A:28853507;C:32430101;G:31750885;T:29004694;N:0 112       28853507 32430101 31750885 29004694 0 SRX24083196 SRS20872850 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31641 31641 SRR28480693 SRX24083195 SRS20872849 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 0.0001bp   zebrafish C10 13 63.0% Cl 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 0.0001bp sccp57 sccp57 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_039.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 88344791.0 788912.0 IonXpress 039.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.98 A:20796976;C:23423614;G:23017973;T:21106228;N:0 111       20796976 23423614 23017973 21106228 0 SRX24083195 SRS20872849 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31642 31642 SRR28480694 SRX24083194 SRS20872848 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 0.001bp   zebrafish C10 13 63.0% Cl 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 0.001bp sccp56 sccp56 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_038.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 98021104.0 864236.0 IonXpress 038.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.42 A:23137220;C:26142070;G:25287236;T:23454578;N:0 113       23137220 26142070 25287236 23454578 0 SRX24083194 SRS20872848 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31643 31643 SRR28480695 SRX24083193 SRS20872847 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 0.01bp   zebrafish C10 13 63.0% Cl 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 0.01bp sccp55 sccp55 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_037.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 108199442.0 958837.0 IonXpress 037.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.84 A:25771016;C:28607370;G:28048727;T:25772329;N:0 112       25771016 28607370 28048727 25772329 0 SRX24083193 SRS20872847 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31644 31644 SRR28480696 SRX24083192 SRS20872845 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 0.1bp   zebrafish C10 13 63.0% Cl 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 0.1bp sccp54 sccp54 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_036.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 105458972.0 934128.0 IonXpress 036.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.90 A:24924433;C:27906991;G:27340010;T:25287538;N:0 112       24924433 27906991 27340010 25287538 0 SRX24083192 SRS20872845 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31645 31645 SRR28480697 SRX24083191 SRS20872846 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 1bp   zebrafish C10 13 63.0% Cl 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 1bp sccp53 sccp53 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_035.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 109362618.0 968693.0 IonXpress 035.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.90 A:26005653;C:28896654;G:28371236;T:26089075;N:0 112       26005653 28896654 28371236 26089075 0 SRX24083191 SRS20872846 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31646 31646 SRR28480698 SRX24083190 SRS20872844 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 10bp   zebrafish C10 13 63.0% Cl 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 10bp sccp52 sccp52 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_034.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 150999296.0 1329642.0 IonXpress 034.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.56 A:35801710;C:39912702;G:39422840;T:35862044;N:0 113       35801710 39912702 39422840 35862044 0 SRX24083190 SRS20872844 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31647 31647 SRR28480699 SRX24083189 SRS20872843 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 63.0% Cl 100bp   zebrafish C10 13 63.0% Cl 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 63.0% Cl 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 63.0% Cl 100bp sccp51 sccp51 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_033.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 118326657.0 1050834.0 IonXpress 033.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.60 A:28048191;C:31348902;G:30800438;T:28129126;N:0 112       28048191 31348902 30800438 28129126 0 SRX24083189 SRS20872843 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31648 31648 SRR28480700 SRX24083188 SRS20872842 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 4   zebrafish control 4   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 4 CK4 CK4 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_032.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 108504007.0 962521.0 IonXpress 032.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.73 A:25803971;C:28561460;G:28211351;T:25927225;N:0 112       25803971 28561460 28211351 25927225 0 SRX24083188 SRS20872842 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31649 31649 SRR28480701 SRX24083187 SRS20872841 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 0.0001bp   zebrafish C10 13 51.5% Cl 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 0.0001bp sccp47 sccp47 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_031.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 106852149.0 944612.0 IonXpress 031.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.12 A:25364517;C:28191855;G:27708782;T:25586995;N:0 113       25364517 28191855 27708782 25586995 0 SRX24083187 SRS20872841 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31650 31650 SRR28480702 SRX24083186 SRS20872840 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 0.1bp   zebrafish C10 65.02% Cl 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 0.1bp sccp14 sccp14 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_004.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 101091383.0 892906.0 IonXpress 004.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.22 A:23773356;C:26804183;G:26509419;T:24004425;N:0 113       23773356 26804183 26509419 24004425 0 SRX24083186 SRS20872840 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31651 31651 SRR28480703 SRX24083185 SRS20872839 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 0.001bp   zebrafish C10 13 51.5% Cl 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 0.001bp sccp46 sccp46 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_030.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 108108886.0 950394.0 IonXpress 030.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.75 A:25735144;C:28605366;G:28028649;T:25739727;N:0 113       25735144 28605366 28028649 25739727 0 SRX24083185 SRS20872839 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31652 31652 SRR28480704 SRX24083184 SRS20872838 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 0.01bp   zebrafish C10 13 51.5% Cl 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 0.01bp sccp45 sccp45 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_029.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 102776913.0 895617.0 IonXpress 029.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:114.76 A:24243608;C:27324915;G:26735990;T:24472400;N:0 114       24243608 27324915 26735990 24472400 0 SRX24083184 SRS20872838 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31653 31653 SRR28480705 SRX24083183 SRS20872837 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 0.1bp   zebrafish C10 13 51.5% Cl 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 0.1bp sccp44 sccp44 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_028.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 111374565.0 993365.0 IonXpress 028.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.12 A:26443074;C:29437482;G:29021416;T:26472593;N:0 112       26443074 29437482 29021416 26472593 0 SRX24083183 SRS20872837 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31654 31654 SRR28480706 SRX24083182 SRS20872835 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 1bp   zebrafish C10 13 51.5% Cl 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 1bp sccp43 sccp43 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_027.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 353606252.0 3115856.0 IonXpress 027.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.49 A:83702877;C:93175606;G:92029314;T:84698455;N:0 113       83702877 93175606 92029314 84698455 0 SRX24083182 SRS20872835 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31655 31655 SRR28480707 SRX24083181 SRS20872836 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 10bp   zebrafish C10 13 51.5% Cl 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 10bp sccp42 sccp42 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_026.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 111996140.0 1011611.0 IonXpress 026.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:110.71 A:26580599;C:29481350;G:29122266;T:26811925;N:0 110       26580599 29481350 29122266 26811925 0 SRX24083181 SRS20872836 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31656 31656 SRR28480708 SRX24083180 SRS20872834 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 13 51.5% Cl 100bp   zebrafish C10 13 51.5% Cl 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 13 51.5% Cl 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 13 51.5% Cl 100bp sccp41 sccp41 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_025.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 107004692.0 958688.0 IonXpress 025.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.62 A:25315357;C:28424669;G:27858900;T:25405766;N:0 111       25315357 28424669 27858900 25405766 0 SRX24083180 SRS20872834 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31657 31657 SRR28480709 SRX24083179 SRS20872833 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 3   zebrafish control 3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 3 CK3 CK3 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_024.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 115240733.0 1026590.0 IonXpress 024.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.26 A:27141618;C:30563585;G:30140946;T:27394584;N:0 112       27141618 30563585 30140946 27394584 0 SRX24083179 SRS20872833 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31658 31658 SRR28480710 SRX24083178 SRS20872832 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 0.0001bp   zebrafish C13 65.18% Cl 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 0.0001bp sccp37 sccp37 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_023.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 112322500.0 989665.0 IonXpress 023.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.50 A:26507724;C:29696631;G:29314989;T:26803156;N:0 113       26507724 29696631 29314989 26803156 0 SRX24083178 SRS20872832 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31659 31659 SRR28480711 SRX24083177 SRS20872831 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 0.001bp   zebrafish C13 65.18% Cl 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 0.001bp sccp36 sccp36 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_022.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 113636579.0 1004782.0 IonXpress 022.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.10 A:26801369;C:30143688;G:29637971;T:27053551;N:0 113       26801369 30143688 29637971 27053551 0 SRX24083177 SRS20872831 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31660 31660 SRR28480712 SRX24083176 SRS20872830 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 0.01bp   zebrafish C13 65.18% Cl 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 0.01bp sccp35 sccp35 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_021.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 144380281.0 1275186.0 IonXpress 021.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.22 A:34269776;C:38139595;G:37631581;T:34339329;N:0 113       34269776 38139595 37631581 34339329 0 SRX24083176 SRS20872830 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31661 31661 SRR28480713 SRX24083175 SRS20872829 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 1bp   zebrafish C10 65.02% Cl 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 1bp sccp13 sccp13 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_003.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 102583823.0 900891.0 IonXpress 003.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.87 A:24139707;C:27392431;G:26685917;T:24365768;N:0 113       24139707 27392431 26685917 24365768 0 SRX24083175 SRS20872829 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31662 31662 SRR28480714 SRX24083174 SRS20872828 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 0.1bp   zebrafish C13 65.18% Cl 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 0.1bp sccp34 sccp34 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_020.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 124781601.0 1107608.0 IonXpress 020.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.66 A:29614536;C:32815136;G:32647459;T:29704470;N:0 112       29614536 32815136 32647459 29704470 0 SRX24083174 SRS20872828 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31663 31663 SRR28480715 SRX24083173 SRS20872827 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 1bp   zebrafish C13 65.18% Cl 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 1bp sccp33 sccp33 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_019.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 91354022.0 810962.0 IonXpress 019.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.65 A:21489915;C:24311006;G:23804472;T:21748629;N:0 112       21489915 24311006 23804472 21748629 0 SRX24083173 SRS20872827 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31664 31664 SRR28480716 SRX24083172 SRS20872826 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 10bp   zebrafish C13 65.18% Cl 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 10bp sccp32 sccp32 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_018.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 99248975.0 882898.0 IonXpress 018.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.41 A:23400094;C:26451591;G:25795741;T:23601549;N:0 112       23400094 26451591 25795741 23601549 0 SRX24083172 SRS20872826 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31665 31665 SRR28480717 SRX24083171 SRS20872825 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C13 65.18% Cl 100bp   zebrafish C13 65.18% Cl 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C13 65.18% Cl 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C13 65.18% Cl 100bp sccp31 sccp31 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_017.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 116164616.0 1029965.0 IonXpress 017.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.79 A:27414271;C:30849960;G:30325830;T:27574555;N:0 112       27414271 30849960 30325830 27574555 0 SRX24083171 SRS20872825 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31666 31666 SRR28480718 SRX24083170 SRS20872824 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     control 2   zebrafish control 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:0.1% DMSO|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish control 2 CK2 CK2 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_016.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 97329986.0 867628.0 IonXpress 016.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.18 A:23139609;C:25709723;G:25171947;T:23308707;N:0 112       23139609 25709723 25171947 23308707 0 SRX24083170 SRS20872824 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31667 31667 SRR28480719 SRX24083169 SRS20872823 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 0.0001bp   zebrafish C11 65.25% Cl 0.0001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.0001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 0.0001bp sccp27 sccp27 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_015.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 95116322.0 857687.0 IonXpress 015.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:110.90 A:22496457;C:25247529;G:24767207;T:22605129;N:0 110       22496457 25247529 24767207 22605129 0 SRX24083169 SRS20872823 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31668 31668 SRR28480720 SRX24083168 SRS20872822 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 0.001bp   zebrafish C11 65.25% Cl 0.001bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.001bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 0.001bp sccp26 sccp26 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_014.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 100213781.0 882391.0 IonXpress 014.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.57 A:23838109;C:26629449;G:25891916;T:23854307;N:0 113       23838109 26629449 25891916 23854307 0 SRX24083168 SRS20872822 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31669 31669 SRR28480721 SRX24083167 SRS20872820 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 0.01bp   zebrafish C11 65.25% Cl 0.01bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.01bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 0.01bp sccp25 sccp25 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_013.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 110879716.0 991963.0 IonXpress 013.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.78 A:26185034;C:29382954;G:28898661;T:26413067;N:0 111       26185034 29382954 28898661 26413067 0 SRX24083167 SRS20872820 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31670 31670 SRR28480722 SRX24083166 SRS20872821 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 0.1bp   zebrafish C11 65.25% Cl 0.1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 0.1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 0.1bp sccp24 sccp24 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_012.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 86622071.0 765510.0 IonXpress 012.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:113.16 A:20617429;C:23040948;G:22479932;T:20483762;N:0 113       20617429 23040948 22479932 20483762 0 SRX24083166 SRS20872821 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31671 31671 SRR28480723 SRX24083165 SRS20872819 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C11 65.25% Cl 1bp   zebrafish C11 65.25% Cl 1bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C11 65.25% Cl 1bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C11 65.25% Cl 1bp sccp23 sccp23 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_011.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 113129868.0 1006612.0 IonXpress 011.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.39 A:26916610;C:29806008;G:29493716;T:26913534;N:0 112       26916610 29806008 29493716 26913534 0 SRX24083165 SRS20872819 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31672 31672 SRR28480724 SRX24083164 SRS20872818 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 10bp   zebrafish C10 65.02% Cl 10bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 10bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 10bp sccp12 sccp12 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_002.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 102651027.0 912042.0 IonXpress 002.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:112.55 A:24135735;C:27359201;G:26643032;T:24513059;N:0 112       24135735 27359201 26643032 24513059 0 SRX24083164 SRS20872818 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures
31673 31673 SRR28480725 SRX24083163 SRS20872817 SRP498323 PRJNA1092793 Transcriptome in zebrafish embryos by SCCPs PRJNA1092793 Other To assessment SCCPs effects of zenrafish 17 SCCPs were tested by reduced zebrfish transcriptome approach.     C10 65.02% Cl 100bp   zebrafish C10 65.02% Cl 100bp   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:24hpf|collection date:2018 07 27|geo loc name:China: Nanjing|sex:not applicable|tissue:embryos|treatment:C10 65.02% Cl 100bp|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C10 65.02% Cl 100bp sccp11 sccp11 RNA was extracted from zebrafish embryos post SCCPs exposure     RNA-Seq TRANSCRIPTOMIC Reduced Representation PAIRED ION_TORRENT Ion Torrent Proton   SRP498323     IonXpress_001.R_2018_07_27_21_04_56_user_BBDefault-107-MC_and_Yan_Lu_2018-07-27.fastq fastq 103648935.0 926414.0 IonXpress 001.R 2018 07 27 21 04 56 user BBDefault 107 MC and Yan Lu 2018 07 27.fastq 0:111.88 A:24562676;C:27487365;G:26982312;T:24616582;N:0 111       24562676 27487365 26982312 24616582 0 SRX24083163 SRS20872817 SRA1834887 Nanjing University,|School of the Environment Nanjing University,                       B   usable mapping rate ion_torrent ion_torrent unknown other unknown bulk unknown unknown   China 2024-03-28 Pharyngula Embryo Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;