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run_metadata

43,746 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "cDNA" and experiment.library_source = "TRANSCRIPTOMIC"

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tissue_curation >10

technology >10

devstage_curation >10

devstage_curation_coarse 6

experiment.platform 4

experiment.library_strategy 2

experiment.library_source 1

  • TRANSCRIPTOMIC · 43,746 ✖

experiment.library_selection 1

  • cDNA · 43,746 ✖

experiment.library_layout 1

  • PAIRED · 43,746 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
44 44 DRR668250 DRX648352 DRS458865 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 3 Zebrafish 2wpi 3 SAMD00799623   sample name:Zebrafish 2wpi 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 25|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799623 DRX648352 RNA seq of spinal cord in zebrafish at 2wpi injured 3 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799623       14782516800.0 73912584.0 DRR668250 0:100 1:100 A:4058090278;C:3335994894;G:3323563782;T:4062467903;N:2399943 100 100     4058090278 3335994894 3323563782 4062467903 2399943 DRX648352 DRS458865 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
45 45 DRR668249 DRX648351 DRS458864 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 2 Zebrafish 2wpi 2 SAMD00799622   sample name:Zebrafish 2wpi 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799622 DRX648351 RNA seq of spinal cord in zebrafish at 2wpi injured 2 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799622       13687641800.0 68438209.0 DRR668249 0:100 1:100 A:3759784620;C:3087398782;G:3083881581;T:3754378915;N:2197902 100 100     3759784620 3087398782 3083881581 3754378915 2197902 DRX648351 DRS458864 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
46 46 DRR668248 DRX648350 DRS458863 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 1 Zebrafish 2wpi 1 SAMD00799621   sample name:Zebrafish 2wpi 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799621 DRX648350 RNA seq of spinal cord in zebrafish at 2wpi injured 1 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799621       16376197200.0 81880986.0 DRR668248 0:100 1:100 A:4485868844;C:3700974430;G:3710833937;T:4475827800;N:2692189 100 100     4485868844 3700974430 3710833937 4475827800 2692189 DRX648350 DRS458863 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
47 47 DRR668247 DRX648349 DRS458862 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 3 Zebrafish Control 3 SAMD00799620   sample name:Zebrafish Control 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799620 DRX648349 RNA seq of spinal cord in zebrafish at 0wpi control 3 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799620       13377538600.0 66887693.0 DRR668247 0:100 1:100 A:3725064764;C:2973653932;G:2980883214;T:3695767890;N:2168800 100 100     3725064764 2973653932 2980883214 3695767890 2168800 DRX648349 DRS458862 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
48 48 DRR668246 DRX648348 DRS458861 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 2 Zebrafish Control 2 SAMD00799619   sample name:Zebrafish Control 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799619 DRX648348 RNA seq of spinal cord in zebrafish at 0wpi control 2 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799619       14971411400.0 74857057.0 DRR668246 0:100 1:100 A:4160326445;C:3329083037;G:3329123314;T:4150453700;N:2424904 100 100     4160326445 3329083037 3329123314 4150453700 2424904 DRX648348 DRS458861 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
49 49 DRR668245 DRX648347 DRS458860 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 1 Zebrafish Control 1 SAMD00799618   sample name:Zebrafish Control 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2024 05 04|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799618 DRX648347 RNA seq of spinal cord in zebrafish at 0wpi control 1 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799618       13912523800.0 69562619.0 DRR668245 0:100 1:100 A:3888902049;C:3079617959;G:3075111814;T:3866655202;N:2236776 100 100     3888902049 3079617959 3075111814 3866655202 2236776 DRX648347 DRS458860 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
131 131 DRR189373 DRX179838 DRS200446 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 3 SAMD00182216   sample name:Cell Tel 3|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182216 DRX179838 Cell Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182216       4142772200.0 20713861.0 DRR189373 0:100 1:100 A:1185533233;C:877739936;G:877025820;T:1202041821;N:431390 100 100     1185533233 877739936 877025820 1202041821 431390 DRX179838 DRS200446 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.9018 0.90073 0.24953 0.25062 0.67884 0.67957 0.49957 0.5402 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
132 132 DRR189372 DRX179837 DRS200445 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 2 SAMD00182215   sample name:Cell Tel 2|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182215 DRX179837 Cell Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182215       5233184600.0 26165923.0 DRR189372 0:100 1:100 A:1522745973;C:1082449570;G:1076728796;T:1550682585;N:577676 100 100     1522745973 1082449570 1076728796 1550682585 577676 DRX179837 DRS200445 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89481 0.89419 0.27137 0.27018 0.67639 0.67671 0.54949 0.55323 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
133 133 DRR189371 DRX179836 DRS200444 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 1 SAMD00182214   sample name:Cell Tel 1|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182214 DRX179836 Cell Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182214       4407578800.0 22037894.0 DRR189371 0:100 1:100 A:1270948410;C:923917605;G:922122984;T:1290126238;N:463563 100 100     1270948410 923917605 922122984 1290126238 463563 DRX179836 DRS200444 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90057 0.90117 0.24092 0.24074 0.67598 0.67775 0.53184 0.53433 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
134 134 DRR189370 DRX179835 DRS200415 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 5 SAMD00182213   sample name:h62A GFP Tel 5|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182213 DRX179835 h62A GFP Tel 5 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182213       2904332400.0 14521662.0 DRR189370 0:100 1:100 A:821602205;C:620206517;G:623738781;T:838474359;N:310538 100 100     821602205 620206517 623738781 838474359 310538 DRX179835 DRS200415 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91925 0.91942 0.14636 0.14584 0.71127 0.71429 0.62818 0.40804 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
135 135 DRR189369 DRX179834 DRS200414 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 4 SAMD00182212   sample name:h62A GFP Tel 4|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182212 DRX179834 h62A GFP Tel 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182212       4670374000.0 23351870.0 DRR189369 0:100 1:100 A:1294304230;C:1030286884;G:1032728119;T:1312561064;N:493703 100 100     1294304230 1030286884 1032728119 1312561064 493703 DRX179834 DRS200414 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.92587 0.92725 0.12279 0.12312 0.71056 0.71293 0.57854 0.57882 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
136 136 DRR189368 DRX179833 DRS200413 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 3 SAMD00182211   sample name:h62A GFP Tel 3|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182211 DRX179833 h62A GFP Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182211       11487645000.0 57438225.0 DRR189368 0:100 1:100 A:3127119396;C:2611288030;G:2547219656;T:3194997425;N:7020493 100 100     3127119396 2611288030 2547219656 3194997425 7020493 DRX179833 DRS200413 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91389 0.91371 0.11188 0.11336 0.74576 0.74639 0.56209 0.56027 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
137 137 DRR189367 DRX179832 DRS200412 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 2 SAMD00182210   sample name:h62A GFP Tel 2|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182210 DRX179832 h62A GFP Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182210       13536257200.0 67681286.0 DRR189367 0:100 1:100 A:3723068804;C:3049411151;G:2951685691;T:3803778575;N:8312979 100 100     3723068804 3049411151 2951685691 3803778575 8312979 DRX179832 DRS200412 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.9136 0.91493 0.14102 0.14249 0.70534 0.70569 0.58385 0.58171 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
138 138 DRR189366 DRX179831 DRS200411 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 1 SAMD00182209   sample name:h62A GFP Tel 1|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182209 DRX179831 h62A GFP Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182209       13057029600.0 65285148.0 DRR189366 0:100 1:100 A:3609997372;C:2912841795;G:2821782510;T:3704302917;N:8105006 100 100     3609997372 2912841795 2821782510 3704302917 8105006 DRX179831 DRS200411 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90766 0.90786 0.13813 0.14007 0.73677 0.73777 0.55675 0.55743 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
139 139 DRR189365 DRX179830 DRS200432 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 4 SAMD00182208   sample name:120A GFP Tel 4|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2000 paired end sequencing of SAMD00182208 DRX179830 120A GFP Tel 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2000 paired end sequencing of SAMD00182208       4105132200.0 20525661.0 DRR189365 0:100 1:100 A:1171500567;C:874901685;G:872257219;T:1186025546;N:447183 100 100     1171500567 874901685 872257219 1186025546 447183 DRX179830 DRS200432 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91106 0.90924 0.18729 0.18688 0.69406 0.69589 0.51697 0.51253 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
140 140 DRR189364 DRX179829 DRS200431 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 3 SAMD00182207   sample name:120A GFP Tel 3|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182207 DRX179829 120A GFP Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182207       5062007400.0 25310037.0 DRR189364 0:100 1:100 A:1425414609;C:1105334563;G:1072448536;T:1458726402;N:83290 100 100     1425414609 1105334563 1072448536 1458726402 83290 DRX179829 DRS200431 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89598 0.89539 0.2645 0.2668 0.69591 0.6971 0.49901 0.49932 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
141 141 DRR189363 DRX179828 DRS200430 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 2 SAMD00182206   sample name:120A GFP Tel 2|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182206 DRX179828 120A GFP Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182206       4148886200.0 20744431.0 DRR189363 0:100 1:100 A:1121946535;C:959659540;G:901840216;T:1165367793;N:72116 100 100     1121946535 959659540 901840216 1165367793 72116 DRX179828 DRS200430 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89808 0.89803 0.14106 0.14229 0.74057 0.74073 0.58127 0.58258 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
142 142 DRR189362 DRX179827 DRS200429 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 1 SAMD00182205   sample name:120A GFP Tel 1|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182205 DRX179827 120A GFP Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182205       5621230800.0 28106154.0 DRR189362 0:100 1:100 A:1511319423;C:1299516107;G:1236814355;T:1573482053;N:98862 100 100     1511319423 1299516107 1236814355 1573482053 98862 DRX179827 DRS200429 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90171 0.90205 0.11967 0.12059 0.74083 0.74113 0.61779 0.61682 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
143 143 DRR189361 DRX179826 DRS200425 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 4 SAMD00182204   sample name:HuC GFP WB 4|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182204 DRX179826 HuC GFP WB 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182204       3641515200.0 18207576.0 DRR189361 0:100 1:100 A:1038686472;C:777269450;G:777179582;T:1047994354;N:385342 100 100     1038686472 777269450 777179582 1047994354 385342 DRX179826 DRS200425 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91246 0.9127 0.18566 0.18547 0.70201 0.7024 0.47049 0.47102 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
144 144 DRR189360 DRX179825 DRS200424 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 3 SAMD00182203   sample name:HuC GFP WB 3|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182203 DRX179825 HuC GFP WB 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182203       4692211000.0 23461055.0 DRR189360 0:100 1:100 A:1310884816;C:1036187295;G:997846600;T:1347212024;N:80265 100 100     1310884816 1036187295 997846600 1347212024 80265 DRX179825 DRS200424 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89626 0.89739 0.18174 0.18338 0.72443 0.72588 0.4577 0.46684 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
145 145 DRR189359 DRX179824 DRS200423 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 2 SAMD00182202   sample name:HuC GFP WB 2|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182202 DRX179824 HuC GFP WB 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182202       7514071000.0 37570355.0 DRR189359 0:100 1:100 A:2098251885;C:1661407212;G:1597423444;T:2156861774;N:126685 100 100     2098251885 1661407212 1597423444 2156861774 126685 DRX179824 DRS200423 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89548 0.89691 0.26231 0.26473 0.70358 0.70471 0.4732 0.4753 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
146 146 DRR189358 DRX179823 DRS200422 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 1 SAMD00182201   sample name:HuC GFP WB 1|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182201 DRX179823 HuC GFP WB 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182201       5175824800.0 25879124.0 DRR189358 0:100 1:100 A:1424688686;C:1174545239;G:1128653980;T:1447848363;N:88532 100 100     1424688686 1174545239 1128653980 1447848363 88532 DRX179823 DRS200422 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91906 0.91958 0.20879 0.21088 0.74787 0.74876 0.45243 0.45221 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
147 147 DRR051067 DRX045959 DRS057267 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     These cells are from the same fish as h62A GFP plus Tel GFP cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish SAMD00044994   sample name:h62A GFP minus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044994 DRX045959 h62A GFP minus Tel 1 cDNA synthesis : clontech SMARTer v3 > Library prep : Illumina Nextera XT DNA Library Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044994       17913873600.0 89569368.0 DRR051067 0:100 1:100 A:5009629866;C:3957379257;G:3797879751;T:5144366288;N:4618438 100 100     5009629866 3957379257 3797879751 5144366288 4618438 DRX045959 DRS057267 DRA004277 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89075 0.89087 0.23044 0.23295 0.69493 0.69769 0.5366 0.54852 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2018-01-06 Undetermined Undetermined Brain Nervous System
148 148 DRR051066 DRX045958 DRS057275 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 40 adult fish by using FACS GFP+ cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish SAMD00044995   sample name:h62A GFP plus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044995 DRX045958 h62A GFP plus Tel 1 cDNA synthesis : clontech SMARTer v3 > Library prep : Illumina Nextera XT DNA Library Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044995       17421256000.0 87106280.0 DRR051066 0:100 1:100 A:4859368314;C:3846634012;G:3717526030;T:4993260256;N:4467388 100 100     4859368314 3846634012 3717526030 4993260256 4467388 DRX045958 DRS057275 DRA004276 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.88127 0.88114 0.22941 0.23155 0.72161 0.72437 0.49284 0.49449 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
149 149 DRR051065 DRX045957 DRS057272 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon from adult zebrafrish 30 min post light and electrical shock association in non trace Two Way Active Avoidance conditioning CS+US telencephalon 30 min post TWAA SAMD00044990   sample name:CS+US Tel 30|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044990 DRX045957 CS+US Tel 30 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044990       20239329200.0 101196646.0 DRR051065 0:100 1:100 A:5347169722;C:4777492672;G:4750401220;T:5361888239;N:2377347 100 100     5347169722 4777492672 4750401220 5361888239 2377347 DRX045957 DRS057272 DRA004275 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.93576 0.93353 0.13979 0.14019 0.70043 0.70203 0.48989 0.49214 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
150 150 DRR051064 DRX045956 DRS057265 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon from adult zebrafrish 30 min post light stimulation in Two Way Active Avoidance coditioning CS telencephalon 30 min post TWAA SAMD00044991   sample name:CS Tel 30|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044991 DRX045956 CS Tel 30 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044991       29268319600.0 146341598.0 DRR051064 0:100 1:100 A:7777792429;C:6878969107;G:6819275179;T:7788795270;N:3487615 100 100     7777792429 6878969107 6819275179 7788795270 3487615 DRX045956 DRS057265 DRA004274 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.93646 0.93664 0.14051 0.14191 0.70199 0.70374 0.49256 0.49684 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
151 151 DRR051063 DRX045955 DRS057266 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     These cells are from the same fish as 120A GFP plus Tel GFP cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish SAMD00044987   sample name:120A GFP minus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044987 DRX045955 120A GFP minus Tel 1 cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044987       15411400120.0 76294060.0 DRR051063 0:101 1:101 A:4583085286;C:3082552426;G:3134669086;T:4606055524;N:5037798 101 101     4583085286 3082552426 3134669086 4606055524 5037798 DRX045955 DRS057266 DRA004273 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89184 0.8842 0.30246 0.30334 0.69232 0.705 0.52824 0.51492 101 101 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified smarter bulk unknown unknown   Japan 2018-01-06 Undetermined Undetermined Brain Nervous System
152 152 DRR051062 DRX045954 DRS057271 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 40 adult fish by using FACS GFP+ cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish SAMD00044988   sample name:120A GFP plus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044988 DRX045954 120A GFP plus Tel 1 cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044988       9916242014.0 49090307.0 DRR051062 0:101 1:101 A:2991626000;C:1935418605;G:1974202781;T:3011783158;N:3211470 101 101     2991626000 1935418605 1974202781 3011783158 3211470 DRX045954 DRS057271 DRA004272 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.87779 0.86382 0.2948 0.28993 0.72809 0.74075 0.50317 0.49169 101 101 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified smarter bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
153 153 DRR051061 DRX045953 DRS057274 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 10 adult fish by using FACS GFP+ cells from whole brain of SAGFFLF231A;UAS:GFP transgenic zebrafish SAMD00044989   sample name:231A GFP plus WB|tissue type:brain|genotype:SAGFFLF231A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044989 DRX045953 231A GFP plus WB 1 cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044989       27230654000.0 136153270.0 DRR051061 0:101 1:99 A:7929214734;C:5506861409;G:5563593280;T:8059057191;N:171927386 101 99     7929214734 5506861409 5563593280 8059057191 171927386 DRX045953 DRS057274 DRA004271 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.88462 0.88282 0.26215 0.26067 0.72468 0.73555 0.48369 0.48285 101 99 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified smarter bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
154 154 DRR051060 DRX045952 DRS057269 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon of adult zebrafrish barin zebrafihsh telencephalon SAMD00044992   sample name:Tel|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044992 DRX045952 Tel 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044992       20006128076.0 99040238.0 DRR051060 0:101 1:101 A:5393556813;C:4623783008;G:4592812230;T:5384415659;N:11560366 101 101     5393556813 4623783008 4592812230 5384415659 11560366 DRX045952 DRS057269 DRA004270 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.94215 0.94001 0.16398 0.16585 0.69331 0.69479 0.4872 0.48516 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
155 155 DRR051059 DRX045951 DRS057270 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Whole brain of adult zebrafish zebrafish whole brain SAMD00044993   sample name:WB|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044993 DRX045951 WB 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044993       25283347776.0 125165088.0 DRR051059 0:101 1:101 A:6845696813;C:5810492697;G:5775241119;T:6837142940;N:14774207 101 101     6845696813 5810492697 5775241119 6837142940 14774207 DRX045951 DRS057270 DRA004269 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.94203 0.94067 0.15107 0.15158 0.68651 0.6882 0.49596 0.49589 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
156 156 DRR067143 DRX061087 DRS034141 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 2 SAMD00057666   sample name:Zebrafish 251A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057666 DRX061087 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057666       2040373922.0 10100861.0 DRR067143 0:101 1:101 A:577691972;C:445051245;G:472607289;T:544962357;N:61059 101 101     577691972 445051245 472607289 544962357 61059 DRX061087 DRS034141 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.83407 0.83802 0.12612 0.12666 0.73675 0.74079 0.4948 0.49282 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
157 157 DRR067142 DRX061086 DRS034140 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Bergmann glial cells using Tg line SAGFFLF251A sample 1 SAMD00057665   sample name:Zebrafish 251A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:bergmann glial cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057665 DRX061086 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057665       2033951534.0 10069067.0 DRR067142 0:101 1:101 A:589558269;C:431084184;G:460501802;T:552746498;N:60781 101 101     589558269 431084184 460501802 552746498 60781 DRX061086 DRS034140 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.8958 0.90339 0.13764 0.1385 0.72563 0.72865 0.49373 0.49916 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
158 158 DRR067141 DRX061085 DRS034139 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 3 SAMD00057664   sample name:Zebrafish aldoca 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 3                 Illumina HiSeq 1500 paired end sequencing of SAMD00057664 DRX061085 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057664       1931908608.0 9563904.0 DRR067141 0:101 1:101 A:558444394;C:409856521;G:429168864;T:534380258;N:58571 101 101     558444394 409856521 429168864 534380258 58571 DRX061085 DRS034139 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.88632 0.89109 0.15695 0.15773 0.75694 0.7599 0.46875 0.49236 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
159 159 DRR067140 DRX061084 DRS034138 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 2 SAMD00057663   sample name:Zebrafish aldoca 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057663 DRX061084 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057663       1851108406.0 9163903.0 DRR067140 0:101 1:101 A:537339104;C:390802782;G:416335529;T:506575762;N:55229 101 101     537339104 390802782 416335529 506575762 55229 DRX061084 DRS034138 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.9055 0.91341 0.1515 0.15333 0.76495 0.76719 0.49219 0.49012 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
160 160 DRR067139 DRX061083 DRS034137 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Purkinje cells using Tg line aldoca:GAP Venus sample 1 SAMD00057662   sample name:Zebrafish aldoca 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:purkinje cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057662 DRX061083 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057662       2000078962.0 9901381.0 DRR067139 0:101 1:101 A:583169141;C:420603631;G:446949308;T:549297272;N:59610 101 101     583169141 420603631 446949308 549297272 59610 DRX061083 DRS034137 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.9056 0.90932 0.15092 0.15179 0.76173 0.7654 0.49028 0.49604 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
161 161 DRR067138 DRX061082 DRS034136 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 2 SAMD00057661   sample name:Zebrafish 152B 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057661 DRX061082 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057661       1997432156.0 9888278.0 DRR067138 0:101 1:101 A:578466824;C:423038930;G:449779231;T:546086391;N:60780 101 101     578466824 423038930 449779231 546086391 60780 DRX061082 DRS034136 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.90322 0.91109 0.1463 0.14811 0.75452 0.75633 0.48303 0.48557 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
162 162 DRR067137 DRX061081 DRS034135 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for granule cells using Tg line gSA2AzGFF152B sample 1 SAMD00057660   sample name:Zebrafish 152B 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:granule cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057660 DRX061081 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057660       1908437218.0 9447709.0 DRR067137 0:101 1:101 A:552150223;C:401993096;G:427236477;T:527000978;N:56444 101 101     552150223 401993096 427236477 527000978 56444 DRX061081 DRS034135 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.90474 0.91043 0.17336 0.17401 0.76108 0.76359 0.483 0.48537 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
163 163 DRR067136 DRX061080 DRS034134 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 3 SAMD00057659   sample name:Zebrafish 28C 03|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 3                 Illumina HiSeq 1500 paired end sequencing of SAMD00057659 DRX061080 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057659       1982971178.0 9816689.0 DRR067136 0:101 1:101 A:504064758;C:488246993;G:520130333;T:470469799;N:59295 101 101     504064758 488246993 520130333 470469799 59295 DRX061080 DRS034134 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.53386 0.54375 0.06072 0.06189 0.76351 0.76641 0.4872 0.48857 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
164 164 DRR067135 DRX061079 DRS034133 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 2 SAMD00057658   sample name:Zebrafish 28C 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057658 DRX061079 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057658       1961048320.0 9708160.0 DRR067135 0:101 1:101 A:557469151;C:424691789;G:455244994;T:523583601;N:58785 101 101     557469151 424691789 455244994 523583601 58785 DRX061079 DRS034133 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.84854 0.8526 0.10311 0.1042 0.75227 0.75499 0.49321 0.49435 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
165 165 DRR067134 DRX061078 DRS034132 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for Inferior olive nuclei using Tg line hspGFFDMC28C sample 1 SAMD00057657   sample name:Zebrafish 28C 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:hindbrain|cell type:inferior olive nuclei|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057657 DRX061078 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057657       1931802760.0 9563380.0 DRR067134 0:101 1:101 A:546501397;C:422500710;G:452200521;T:510543489;N:56643 101 101     546501397 422500710 452200521 510543489 56643 DRX061078 DRS034132 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.85439 0.85613 0.09867 0.09897 0.76871 0.77082 0.48943 0.48936 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
166 166 DRR067133 DRX061077 DRS034131 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 2 SAMD00057656   sample name:Zebrafish 156A 02|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 2                 Illumina HiSeq 1500 paired end sequencing of SAMD00057656 DRX061077 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057656       2054289096.0 10169748.0 DRR067133 0:101 1:101 A:563764176;C:464768863;G:497506420;T:528187503;N:62134 101 101     563764176 464768863 497506420 528187503 62134 DRX061077 DRS034131 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.69311 0.6968 0.12309 0.12389 0.76428 0.76676 0.48379 0.48227 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
167 167 DRR067132 DRX061076 DRS034130 DRP003275 PRJDB4941 Gene expression profiling of granule cells and Purkinje cells in zebrafish cerebellum DRP003275 Other An RNA seq analysis was performed using zebrafish granule cells Purkinje cells IO neurons and glial cells. The transcriptomes were sequenced using Illumina HiSeq with paired end libraries employing the Quartz seq method for low amount total RNA.       Zebrafish RNA seq for eurydendroid cells using Tg line hspzGFFgDMC156A sample 1 SAMD00057655   sample name:Zebrafish 156A 01|strain:Tg|biomaterial provider:Bioscience and Biotechnology Center Nagoya University|tissue type:cerebellum|cell type:eurydendroid cells|dev stage:14 dpf|replicate:biological replicate 1                 Illumina HiSeq 1500 paired end sequencing of SAMD00057655 DRX061076 1 1 Quartz seq for low amount total RNA   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003275 Illumina HiSeq 1500 paired end sequencing of SAMD00057655       2152665722.0 10656761.0 DRR067132 0:101 1:101 A:585252781;C:495382257;G:522677749;T:549287359;N:65576 101 101     585252781 495382257 522677749 549287359 65576 DRX061076 DRS034130 DRA004955 RIKEN_CLST_DBFDI|Phyloinformatics Unit RIKEN CLST 2 0.67771 0.68253 0.12949 0.1303 0.77216 0.77542 0.4951 0.49452 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown sc single_cell_plate quartzseq   Japan 2016-09-19 Larval Larval Brain Nervous System
186 186 DRR162555 DRX153174 DRS083235 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate5 SAMD00152503   sample name:m39 5|age:39 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152503 DRX153174 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152503       1721110400.0 8605552.0 DRR162555 0:100 1:100 A:449613689;C:409864831;G:412050483;T:447085797;N:2495600 100 100     449613689 409864831 412050483 447085797 2495600 DRX153174 DRS083235 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96635 0.94149 0.03182 0.03006 0.81631 0.82449 0.53424 0.53879 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
187 187 DRR162554 DRX153173 DRS083234 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate4 SAMD00152502   sample name:m39 4|age:39 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152502 DRX153173 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152502       771888600.0 3859443.0 DRR162554 0:100 1:100 A:209886275;C:175458903;G:177995758;T:207451261;N:1096403 100 100     209886275 175458903 177995758 207451261 1096403 DRX153173 DRS083234 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95789 0.92781 0.03714 0.03527 0.80075 0.80917 0.5336 0.53957 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
188 188 DRR162553 DRX153172 DRS083233 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate3 SAMD00152501   sample name:m39 3|age:39 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152501 DRX153172 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152501       1750331200.0 8751656.0 DRR162553 0:100 1:100 A:470950871;C:402540953;G:405453019;T:468920181;N:2466176 100 100     470950871 402540953 405453019 468920181 2466176 DRX153172 DRS083233 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96458 0.93283 0.03644 0.03456 0.82169 0.82858 0.5481 0.54735 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
189 189 DRR162552 DRX153171 DRS083232 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate2 SAMD00152500   sample name:m39 2|age:39 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152500 DRX153171 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152500       1067838800.0 5339194.0 DRR162552 0:100 1:100 A:298532843;C:233982076;G:237439824;T:296396354;N:1487703 100 100     298532843 233982076 237439824 296396354 1487703 DRX153171 DRS083232 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95828 0.92985 0.04771 0.04523 0.79488 0.80294 0.49034 0.56243 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
190 190 DRR162551 DRX153170 DRS083231 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate1 SAMD00152499   sample name:m39 1|age:39 month|biological replicate:1|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152499 DRX153170 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152499       1067002000.0 5335010.0 DRR162551 0:100 1:100 A:278427675;C:254036661;G:255175092;T:277557906;N:1804666 100 100     278427675 254036661 255175092 277557906 1804666 DRX153170 DRS083231 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95438 0.92802 0.05748 0.05502 0.79192 0.79819 0.52464 0.52682 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
191 191 DRR162550 DRX153169 DRS083230 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate5 SAMD00152498   sample name:m16 5|age:16 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152498 DRX153169 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152498       930106600.0 4650533.0 DRR162550 0:100 1:100 A:242979975;C:221639069;G:223234689;T:240720049;N:1532818 100 100     242979975 221639069 223234689 240720049 1532818 DRX153169 DRS083230 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96995 0.94193 0.02755 0.02642 0.84816 0.85549 0.57425 0.52005 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
192 192 DRR162549 DRX153168 DRS083229 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate4 SAMD00152497   sample name:m16 4|age:16 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152497 DRX153168 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152497       785247000.0 3926235.0 DRR162549 0:100 1:100 A:201565472;C:190838604;G:191695270;T:199849282;N:1298372 100 100     201565472 190838604 191695270 199849282 1298372 DRX153168 DRS083229 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96925 0.95032 0.02522 0.02431 0.83528 0.84135 0.45946 0.52823 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
193 193 DRR162548 DRX153167 DRS083228 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate3 SAMD00152496   sample name:m16 3|age:16 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152496 DRX153167 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152496       712659400.0 3563297.0 DRR162548 0:100 1:100 A:184163345;C:171746662;G:173153688;T:182436940;N:1158765 100 100     184163345 171746662 173153688 182436940 1158765 DRX153167 DRS083228 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97092 0.94516 0.02464 0.02354 0.82925 0.83721 0.55084 0.55847 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
194 194 DRR162547 DRX153166 DRS083227 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate2 SAMD00152495   sample name:m16 2|age:16 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152495 DRX153166 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152495       795706600.0 3978533.0 DRR162547 0:100 1:100 A:205087113;C:192675977;G:193703665;T:203054171;N:1185674 100 100     205087113 192675977 193703665 203054171 1185674 DRX153166 DRS083227 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9693 0.94476 0.03018 0.02924 0.81615 0.82564 0.52874 0.52813 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
195 195 DRR162546 DRX153165 DRS083226 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate1 SAMD00152494   sample name:m16 1|age:16 month|biological replicate:1|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152494 DRX153165 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152494       851036600.0 4255183.0 DRR162546 0:100 1:100 A:224583615;C:200474581;G:201849331;T:222664124;N:1464949 100 100     224583615 200474581 201849331 222664124 1464949 DRX153165 DRS083226 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96969 0.95023 0.02693 0.02563 0.84567 0.85218 0.58468 0.58831 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
196 196 DRR162545 DRX153164 DRS083225 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 7 mpf zebrafish replicate5 SAMD00152493   sample name:m07 5|age:7 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152493 DRX153164 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152493       1024543600.0 5122718.0 DRR162545 0:100 1:100 A:255646947;C:257072899;G:256778094;T:253384531;N:1661129 100 100     255646947 257072899 256778094 253384531 1661129 DRX153164 DRS083225 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97634 0.95731 0.01486 0.01517 0.87592 0.89252 0.50702 0.50609 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
197 197 DRR162544 DRX153163 DRS083224 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 7 mpf zebrafish replicate4 SAMD00152492   sample name:m07 4|age:7 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152492 DRX153163 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152492       1039809600.0 5199048.0 DRR162544 0:100 1:100 A:260916983;C:258869102;G:260873844;T:257458225;N:1691446 100 100     260916983 258869102 260873844 257458225 1691446 DRX153163 DRS083224 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97612 0.94137 0.01751 0.01634 0.85527 0.86367 0.50786 0.50679 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
198 198 DRR162543 DRX153162 DRS083223 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 7 mpf zebrafish replicate3 SAMD00152491   sample name:m07 3|age:7 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152491 DRX153162 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152491       1081187000.0 5405935.0 DRR162543 0:100 1:100 A:272702030;C:267625388;G:270437426;T:268730517;N:1691639 100 100     272702030 267625388 270437426 268730517 1691639 DRX153162 DRS083223 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97471 0.93399 0.02247 0.02056 0.86876 0.87519 0.54092 0.53031 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
199 199 DRR162542 DRX153161 DRS083222 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 7 mpf zebrafish replicate2 SAMD00152490   sample name:m07 2|age:7 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152490 DRX153161 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152490       1375265200.0 6876326.0 DRR162542 0:100 1:100 A:352606827;C:334370724;G:335176090;T:350910646;N:2200913 100 100     352606827 334370724 335176090 350910646 2200913 DRX153161 DRS083222 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96089 0.92859 0.02237 0.02125 0.76824 0.7777 0.51352 0.51124 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
200 200 DRR162541 DRX153160 DRS083221 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 7 mpf zebrafish replicate1 SAMD00152489   sample name:m07 1|age:7 month|biological replicate:1|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152489 DRX153160 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152489       1331668400.0 6658342.0 DRR162541 0:100 1:100 A:339618846;C:325463872;G:328670370;T:335855545;N:2059767 100 100     339618846 325463872 328670370 335855545 2059767 DRX153160 DRS083221 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9743 0.93669 0.02259 0.02116 0.84676 0.85476 0.54434 0.53825 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
201 201 DRR162540 DRX153159 DRS083220 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 2 mpf zebrafish replicate5 SAMD00152488   sample name:m02 5|age:2 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152488 DRX153159 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152488       1063436200.0 5317181.0 DRR162540 0:100 1:100 A:275438061;C:255805442;G:257091950;T:273487067;N:1613680 100 100     275438061 255805442 257091950 273487067 1613680 DRX153159 DRS083220 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96295 0.92896 0.04409 0.0427 0.75355 0.76499 0.49339 0.50418 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Muscle Muscular System
202 202 DRR162539 DRX153158 DRS083219 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 2 mpf zebrafish replicate4 SAMD00152487   sample name:m02 4|age:2 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152487 DRX153158 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152487       1233640200.0 6168201.0 DRR162539 0:100 1:100 A:318959646;C:297211942;G:300002324;T:315647570;N:1818718 100 100     318959646 297211942 300002324 315647570 1818718 DRX153158 DRS083219 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96511 0.92512 0.04175 0.04058 0.77607 0.78835 0.48689 0.50535 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Muscle Muscular System
203 203 DRR162538 DRX153157 DRS083218 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 2 mpf zebrafish replicate3 SAMD00152486   sample name:m02 3|age:2 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152486 DRX153157 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152486       675957200.0 3379786.0 DRR162538 0:100 1:100 A:173033870;C:164578076;G:165481544;T:171780353;N:1083357 100 100     173033870 164578076 165481544 171780353 1083357 DRX153157 DRS083218 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97251 0.94405 0.03347 0.03256 0.82432 0.83159 0.55228 0.47905 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Muscle Muscular System
204 204 DRR162537 DRX153156 DRS083217 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 2 mpf zebrafish replicate2 SAMD00152485   sample name:m02 2|age:2 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152485 DRX153156 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152485       1260768000.0 6303840.0 DRR162537 0:100 1:100 A:319433176;C:310903964;G:312279388;T:316219239;N:1932233 100 100     319433176 310903964 312279388 316219239 1932233 DRX153156 DRS083217 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96774 0.93275 0.04099 0.04003 0.76919 0.79626 0.51687 0.50638 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Muscle Muscular System
205 205 DRR162536 DRX153155 DRS083216 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 2 mpf zebrafish replicate1 SAMD00152484   sample name:m02 1|age:2 month|biological replicate:1|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152484 DRX153155 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152484       1318898400.0 6594492.0 DRR162536 0:100 1:100 A:337402722;C:321381897;G:323422706;T:334658718;N:2032357 100 100     337402722 321381897 323422706 334658718 2032357 DRX153155 DRS083216 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9692 0.93768 0.02944 0.02852 0.79431 0.80359 0.50636 0.51065 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Muscle Muscular System
206 206 DRR162535 DRX153154 DRS083215 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 39 mpf zebrafish replicate5 SAMD00152483   sample name:l39 5|age:39 month|biological replicate:5|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152483 DRX153154 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152483       1222686600.0 6113433.0 DRR162535 0:100 1:100 A:332248505;C:277678269;G:280475826;T:332221614;N:62386 100 100     332248505 277678269 280475826 332221614 62386 DRX153154 DRS083215 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94973 0.95168 0.05815 0.0574 0.80714 0.80992 0.2996 0.29323 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
207 207 DRR162534 DRX153153 DRS083214 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 39 mpf zebrafish replicate4 SAMD00152482   sample name:l39 4|age:39 month|biological replicate:4|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152482 DRX153153 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152482       1640116400.0 8200582.0 DRR162534 0:100 1:100 A:453347555;C:365904202;G:366450625;T:454324883;N:89135 100 100     453347555 365904202 366450625 454324883 89135 DRX153153 DRS083214 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93653 0.93054 0.09033 0.08864 0.7417 0.74341 0.47622 0.47803 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
208 208 DRR162533 DRX153152 DRS083213 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 39 mpf zebrafish replicate3 SAMD00152481   sample name:l39 3|age:39 month|biological replicate:3|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152481 DRX153152 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152481       1676561000.0 8382805.0 DRR162533 0:100 1:100 A:458233101;C:380058901;G:378567207;T:459616427;N:85364 100 100     458233101 380058901 378567207 459616427 85364 DRX153152 DRS083213 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94088 0.93572 0.08357 0.08412 0.78516 0.79383 0.58177 0.569 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
209 209 DRR162532 DRX153151 DRS083212 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 39 mpf zebrafish replicate2 SAMD00152480   sample name:l39 2|age:39 month|biological replicate:2|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152480 DRX153151 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152480       1818896600.0 9094483.0 DRR162532 0:100 1:100 A:513353000;C:395752133;G:399719533;T:509976715;N:95219 100 100     513353000 395752133 399719533 509976715 95219 DRX153151 DRS083212 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.92557 0.90731 0.10552 0.10279 0.73655 0.73963 0.55463 0.53901 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
210 210 DRR162531 DRX153150 DRS083211 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 39 mpf zebrafish replicate1 SAMD00152479   sample name:l39 1|age:39 month|biological replicate:1|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152479 DRX153150 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152479       1365495000.0 6827475.0 DRR162531 0:100 1:100 A:397961331;C:285103195;G:285088182;T:397271923;N:70369 100 100     397961331 285103195 285088182 397271923 70369 DRX153150 DRS083211 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.91718 0.9094 0.12236 0.12108 0.74905 0.75213 0.52227 0.52956 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
211 211 DRR162530 DRX153149 DRS083210 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 16 mpf zebrafish replicate5 SAMD00152478   sample name:l16 5|age:16 month|biological replicate:5|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152478 DRX153149 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152478       1350377800.0 6751889.0 DRR162530 0:100 1:100 A:386028757;C:288772838;G:290958369;T:384548737;N:69099 100 100     386028757 288772838 290958369 384548737 69099 DRX153149 DRS083210 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93516 0.92365 0.08362 0.08141 0.82446 0.82769 0.62055 0.62498 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
212 212 DRR162529 DRX153148 DRS083209 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 16 mpf zebrafish replicate4 SAMD00152477   sample name:l16 4|age:16 month|biological replicate:4|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152477 DRX153148 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152477       1336103200.0 6680516.0 DRR162529 0:100 1:100 A:382497123;C:284680985;G:285893391;T:382963813;N:67888 100 100     382497123 284680985 285893391 382963813 67888 DRX153148 DRS083209 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9394 0.94216 0.0736 0.07267 0.81909 0.82063 0.34071 0.35081 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
213 213 DRR162528 DRX153147 DRS083208 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 16 mpf zebrafish replicate3 SAMD00152476   sample name:l16 3|age:16 month|biological replicate:3|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152476 DRX153147 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152476       1382207400.0 6911037.0 DRR162528 0:100 1:100 A:389944369;C:300605191;G:301498468;T:390090609;N:68763 100 100     389944369 300605191 301498468 390090609 68763 DRX153147 DRS083208 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93205 0.92544 0.08167 0.0803 0.80164 0.80472 0.60042 0.52988 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
214 214 DRR162527 DRX153146 DRS083207 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 16 mpf zebrafish replicate2 SAMD00152475   sample name:l16 2|age:16 month|biological replicate:2|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152475 DRX153146 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152475       1420870200.0 7104351.0 DRR162527 0:100 1:100 A:390283357;C:318567042;G:320772328;T:391175121;N:72352 100 100     390283357 318567042 320772328 391175121 72352 DRX153146 DRS083207 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95451 0.95673 0.03982 0.04064 0.83765 0.84053 0.16589 0.16881 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
215 215 DRR162526 DRX153145 DRS083206 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 16 mpf zebrafish replicate1 SAMD00152474   sample name:l16 1|age:16 month|biological replicate:1|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152474 DRX153145 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152474       1153415600.0 5767078.0 DRR162526 0:100 1:100 A:331352139;C:244998423;G:248301842;T:328704463;N:58733 100 100     331352139 244998423 248301842 328704463 58733 DRX153145 DRS083206 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95303 0.95385 0.03203 0.03206 0.86592 0.86734 0.23054 0.23207 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
216 216 DRR162525 DRX153144 DRS083205 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 7 mpf zebrafish replicate5 SAMD00152473   sample name:l07 5|age:7 month|biological replicate:5|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152473 DRX153144 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152473       890770600.0 4453853.0 DRR162525 0:100 1:100 A:256905080;C:188672401;G:188524159;T:256621928;N:47032 100 100     256905080 188672401 188524159 256621928 47032 DRX153144 DRS083205 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9268 0.9203 0.08741 0.08714 0.79013 0.80292 0.60305 0.60127 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
217 217 DRR162524 DRX153143 DRS083204 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 7 mpf zebrafish replicate4 SAMD00152472   sample name:l07 4|age:7 month|biological replicate:4|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152472 DRX153143 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152472       1483455800.0 7417279.0 DRR162524 0:100 1:100 A:436293893;C:304891230;G:308137580;T:434055810;N:77287 100 100     436293893 304891230 308137580 434055810 77287 DRX153143 DRS083204 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.91896 0.90192 0.0717 0.07014 0.81085 0.8132 0.58351 0.59366 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
218 218 DRR162523 DRX153142 DRS083203 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 7 mpf zebrafish replicate3 SAMD00152471   sample name:l07 3|age:7 month|biological replicate:3|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152471 DRX153142 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152471       1864489400.0 9322447.0 DRR162523 0:100 1:100 A:502417821;C:427210740;G:431014519;T:503749673;N:96647 100 100     502417821 427210740 431014519 503749673 96647 DRX153142 DRS083203 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95976 0.96143 0.04395 0.04468 0.79448 0.79782 0.263 0.26714 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
219 219 DRR162522 DRX153141 DRS083202 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 7 mpf zebrafish replicate2 SAMD00152470   sample name:l07 2|age:7 month|biological replicate:2|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152470 DRX153141 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152470       2033108200.0 10165541.0 DRR162522 0:100 1:100 A:551635703;C:463271027;G:463695854;T:554401182;N:104434 100 100     551635703 463271027 463695854 554401182 104434 DRX153141 DRS083202 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94795 0.94217 0.05903 0.0589 0.79131 0.79462 0.54196 0.5496 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
220 220 DRR162521 DRX153140 DRS083201 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 7 mpf zebrafish replicate1 SAMD00152469   sample name:l07 1|age:7 month|biological replicate:1|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152469 DRX153140 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152469       1468954400.0 7344772.0 DRR162521 0:100 1:100 A:395399684;C:336608951;G:340607200;T:396263402;N:75163 100 100     395399684 336608951 340607200 396263402 75163 DRX153140 DRS083201 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95562 0.95778 0.02931 0.02966 0.86667 0.8686 0.15375 0.16038 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Liver Liver and Biliary System
221 221 DRR162520 DRX153139 DRS083200 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 2 mpf zebrafish replicate5 SAMD00152468   sample name:l02 5|age:2 month|biological replicate:5|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152468 DRX153139 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152468       1264817800.0 6324089.0 DRR162520 0:100 1:100 A:351295111;C:280181229;G:281044764;T:352232836;N:63860 100 100     351295111 280181229 281044764 352232836 63860 DRX153139 DRS083200 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93687 0.93419 0.07774 0.07776 0.7587 0.7609 0.56082 0.56748 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Liver Liver and Biliary System
222 222 DRR162519 DRX153138 DRS083199 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 2 mpf zebrafish replicate4 SAMD00152467   sample name:l02 4|age:2 month|biological replicate:4|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152467 DRX153138 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152467       1762366200.0 8811831.0 DRR162519 0:100 1:100 A:481999545;C:397566169;G:399183135;T:483526493;N:90858 100 100     481999545 397566169 399183135 483526493 90858 DRX153138 DRS083199 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93994 0.93528 0.06039 0.05936 0.75037 0.75394 0.52945 0.52961 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Liver Liver and Biliary System
223 223 DRR162518 DRX153137 DRS083198 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 2 mpf zebrafish replicate3 SAMD00152466   sample name:l02 3|age:2 month|biological replicate:3|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152466 DRX153137 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152466       1464434200.0 7322171.0 DRR162518 0:100 1:100 A:400972247;C:330316514;G:329635959;T:403435022;N:74458 100 100     400972247 330316514 329635959 403435022 74458 DRX153137 DRS083198 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94169 0.93517 0.075 0.07408 0.78541 0.78796 0.56483 0.56426 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Liver Liver and Biliary System
224 224 DRR162517 DRX153136 DRS083197 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 2 mpf zebrafish replicate2 SAMD00152465   sample name:l02 2|age:2 month|biological replicate:2|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152465 DRX153136 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152465       1953667000.0 9768335.0 DRR162517 0:100 1:100 A:525411621;C:450279523;G:450410879;T:527464993;N:99984 100 100     525411621 450279523 450410879 527464993 99984 DRX153136 DRS083197 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94424 0.93692 0.06451 0.06582 0.78358 0.79557 0.56036 0.57581 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Liver Liver and Biliary System
225 225 DRR162516 DRX153135 DRS083196 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       liver sample from 2 mpf zebrafish replicate1 SAMD00152464   sample name:l02 1|age:2 month|biological replicate:1|tissue:liver                 Illumina HiSeq 2000 paired end sequencing of SAMD00152464 DRX153135 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152464       1541676600.0 7708383.0 DRR162516 0:100 1:100 A:414776600;C:354650822;G:357258514;T:414910092;N:80572 100 100     414776600 354650822 357258514 414910092 80572 DRX153135 DRS083196 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94346 0.93048 0.06888 0.06759 0.79086 0.79452 0.56037 0.55727 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Juvenile Juvenile Liver Liver and Biliary System
226 226 DRR162515 DRX153134 DRS083195 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 39 mpf zebrafish replicate4 SAMD00152463   sample name:h39 5|age:39 month|biological replicate:4|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152463 DRX153134 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152463       752785200.0 3763926.0 DRR162515 0:100 1:100 A:211753297;C:164230605;G:164002975;T:211653858;N:1144465 100 100     211753297 164230605 164002975 211653858 1144465 DRX153134 DRS083195 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94694 0.92403 0.08673 0.0834 0.76676 0.77494 0.55153 0.55428 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
227 227 DRR162514 DRX153133 DRS083194 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 39 mpf zebrafish replicate3 SAMD00152462   sample name:h39 4|age:39 month|biological replicate:3|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152462 DRX153133 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152462       679062000.0 3395310.0 DRR162514 0:100 1:100 A:196564583;C:142498995;G:143087462;T:195785946;N:1125014 100 100     196564583 142498995 143087462 195785946 1125014 DRX153133 DRS083194 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93382 0.90845 0.09509 0.09064 0.74959 0.75716 0.54651 0.55443 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
228 228 DRR162513 DRX153132 DRS083193 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 39 mpf zebrafish replicate2 SAMD00152461   sample name:h39 3|age:39 month|biological replicate:2|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152461 DRX153132 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152461       820363600.0 4101818.0 DRR162513 0:100 1:100 A:216665257;C:194340343;G:194565546;T:214750864;N:41590 100 100     216665257 194340343 194565546 214750864 41590 DRX153132 DRS083193 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96835 0.9597 0.05737 0.05723 0.77518 0.78977 0.52379 0.52345 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
229 229 DRR162512 DRX153131 DRS083192 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 39 mpf zebrafish replicate1 SAMD00152460   sample name:h39 2|age:39 month|biological replicate:1|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152460 DRX153131 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152460       865257400.0 4326287.0 DRR162512 0:100 1:100 A:232463535;C:201007012;G:201960678;T:229782957;N:43218 100 100     232463535 201007012 201960678 229782957 43218 DRX153131 DRS083192 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96533 0.95132 0.05078 0.04891 0.79961 0.80204 0.5113 0.51569 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
230 230 DRR162511 DRX153130 DRS083191 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 16 mpf zebrafish replicate5 SAMD00152459   sample name:h16 5|age:16 month|biological replicate:5|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152459 DRX153130 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152459       719278200.0 3596391.0 DRR162511 0:100 1:100 A:208319036;C:151385486;G:151714770;T:207822080;N:36828 100 100     208319036 151385486 151714770 207822080 36828 DRX153130 DRS083191 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95229 0.95465 0.0764 0.07543 0.80056 0.80229 0.51533 0.5793 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
231 231 DRR162510 DRX153129 DRS083190 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 16 mpf zebrafish replicate4 SAMD00152458   sample name:h16 4|age:16 month|biological replicate:4|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152458 DRX153129 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152458       826575600.0 4132878.0 DRR162510 0:100 1:100 A:248945884;C:164298731;G:163783086;T:249505745;N:42154 100 100     248945884 164298731 163783086 249505745 42154 DRX153129 DRS083190 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.92443 0.9204 0.12773 0.1248 0.75702 0.75948 0.55913 0.57701 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
232 232 DRR162509 DRX153128 DRS083189 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 16 mpf zebrafish replicate3 SAMD00152457   sample name:h16 3|age:16 month|biological replicate:3|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152457 DRX153128 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152457       1094115600.0 5470578.0 DRR162509 0:100 1:100 A:323187964;C:223739793;G:223873492;T:323258173;N:56178 100 100     323187964 223739793 223873492 323258173 56178 DRX153128 DRS083189 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94683 0.94429 0.08329 0.08231 0.78845 0.78875 0.59669 0.60756 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
233 233 DRR162508 DRX153127 DRS083188 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 16 mpf zebrafish replicate2 SAMD00152456   sample name:h16 2|age:16 month|biological replicate:2|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152456 DRX153127 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152456       1020794600.0 5103973.0 DRR162508 0:100 1:100 A:308506490;C:201790189;G:201599005;T:308845325;N:53591 100 100     308506490 201790189 201599005 308845325 53591 DRX153127 DRS083188 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.93523 0.93011 0.10853 0.10682 0.77727 0.77841 0.5927 0.59624 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
234 234 DRR162507 DRX153126 DRS083187 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 16 mpf zebrafish replicate1 SAMD00152455   sample name:h16 1|age:16 month|biological replicate:1|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152455 DRX153126 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152455       733044200.0 3665221.0 DRR162507 0:100 1:100 A:217522605;C:148795881;G:149576712;T:217109635;N:39367 100 100     217522605 148795881 149576712 217109635 39367 DRX153126 DRS083187 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.94337 0.92685 0.08628 0.08365 0.78147 0.78366 0.61098 0.61073 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
235 235 DRR162506 DRX153125 DRS083186 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 7 mpf zebrafish replicate5 SAMD00152454   sample name:h07 5|age:7 month|biological replicate:5|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152454 DRX153125 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152454       979233200.0 4896166.0 DRR162506 0:100 1:100 A:249561707;C:239388088;G:240240872;T:248407989;N:1634544 100 100     249561707 239388088 240240872 248407989 1634544 DRX153125 DRS083186 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9639 0.93711 0.08232 0.07857 0.7835 0.79198 0.52539 0.51656 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
236 236 DRR162505 DRX153124 DRS083185 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 7 mpf zebrafish replicate4 SAMD00152453   sample name:h07 4|age:7 month|biological replicate:4|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152453 DRX153124 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152453       633922400.0 3169612.0 DRR162505 0:100 1:100 A:158236352;C:158464487;G:159505789;T:156692659;N:1023113 100 100     158236352 158464487 159505789 156692659 1023113 DRX153124 DRS083185 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97351 0.94642 0.06401 0.06072 0.83721 0.84532 0.52177 0.5279 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
237 237 DRR162504 DRX153123 DRS083184 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 7 mpf zebrafish replicate3 SAMD00152452   sample name:h07 3|age:7 month|biological replicate:3|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152452 DRX153123 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152452       3134971400.0 15674857.0 DRR162504 0:100 1:100 A:848586113;C:717201130;G:718012934;T:846124340;N:5046883 100 100     848586113 717201130 718012934 846124340 5046883 DRX153123 DRS083184 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95766 0.93244 0.06284 0.06048 0.7767 0.78595 0.5246 0.53241 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
238 238 DRR162503 DRX153122 DRS083183 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 7 mpf zebrafish replicate2 SAMD00152451   sample name:h07 2|age:7 month|biological replicate:2|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152451 DRX153122 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152451       1128933600.0 5644668.0 DRR162503 0:100 1:100 A:298341135;C:265514569;G:266315284;T:296956092;N:1806520 100 100     298341135 265514569 266315284 296956092 1806520 DRX153122 DRS083183 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96447 0.94022 0.07383 0.07032 0.79295 0.80075 0.5553 0.54794 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
239 239 DRR162502 DRX153121 DRS083182 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       heart sample from 7 mpf zebrafish replicate1 SAMD00152450   sample name:h07 1|age:7 month|biological replicate:1|tissue:heart                 Illumina HiSeq 2000 paired end sequencing of SAMD00152450 DRX153121 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152450       1104589000.0 5522945.0 DRR162502 0:100 1:100 A:296710605;C:254979238;G:256772800;T:294385639;N:1740718 100 100     296710605 254979238 256772800 294385639 1740718 DRX153121 DRS083182 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9561 0.92652 0.05819 0.05627 0.77914 0.78729 0.49578 0.52012 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Heart Cardiovascular System
240 240 DRR162501 DRX153120 DRS083181 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       gill sample from 39 mpf zebrafish replicate5 SAMD00152449   sample name:g39 5|age:39 month|biological replicate:5|tissue:gill                 Illumina HiSeq 2000 paired end sequencing of SAMD00152449 DRX153120 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152449       871964800.0 4359824.0 DRR162501 0:100 1:100 A:245477085;C:190759033;G:191262929;T:244420643;N:45110 100 100     245477085 190759033 191262929 244420643 45110 DRX153120 DRS083181 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.91962 0.91237 0.09868 0.09688 0.71161 0.71307 0.53167 0.51753 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Gill Respiratory System
241 241 DRR162500 DRX153119 DRS083180 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       gill sample from 39 mpf zebrafish replicate4 SAMD00152448   sample name:g39 4|age:39 month|biological replicate:4|tissue:gill                 Illumina HiSeq 2000 paired end sequencing of SAMD00152448 DRX153119 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152448       1034286600.0 5171433.0 DRR162500 0:100 1:100 A:298325965;C:219665025;G:219344349;T:296896484;N:54777 100 100     298325965 219665025 219344349 296896484 54777 DRX153119 DRS083180 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.91301 0.90076 0.11123 0.10834 0.70778 0.71165 0.55555 0.56161 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Gill Respiratory System
242 242 DRR162499 DRX153118 DRS083179 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       gill sample from 39 mpf zebrafish replicate3 SAMD00152447   sample name:g39 3|age:39 month|biological replicate:3|tissue:gill                 Illumina HiSeq 2000 paired end sequencing of SAMD00152447 DRX153118 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152447       992791600.0 4963958.0 DRR162499 0:100 1:100 A:282861329;C:214120789;G:214176850;T:281583783;N:48849 100 100     282861329 214120789 214176850 281583783 48849 DRX153118 DRS083179 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.91255 0.90373 0.11243 0.11 0.69852 0.70088 0.51884 0.51758 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Gill Respiratory System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;