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21 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "RANDOM PCR" and tissue_curation_coarse = "Reproductive System"

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devstage_curation 3

tissue_curation 2

experiment.platform 2

devstage_curation_coarse 2

tissue_curation_coarse 1

  • Reproductive System · 21 ✖

technology 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM PCR · 21 ✖

experiment.library_layout 1

  • PAIRED · 21 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
49742 49742 SRR8197481 SRX5016863 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: prim5 stage Z2 3 F Z2 3 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z2_3_1.fq.gz Z2_3_2.fq.gz fastq fastq 6979181500.0 27916726.0 Z2 3 1.fq.gz 0:125 1:125 A:1822429760;C:1670132153;G:1694226275;T:1791552753;N:840559 125 125     1822429760 1670132153 1694226275 1791552753 840559 SRX5016863 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.9586 0.9518 0.02217 0.02129 0.81022 0.80921 0.50342 0.51319 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-16 Multi-stage Embryo Oocyte Reproductive System
49743 49743 SRR8197482 SRX5016862 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: prim5 stage Z2 1 F Z2 1 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z2_1_2.fq.gz Z2_1_1.fq.gz fastq fastq 6728695750.0 26914783.0 Z2 1 1.fq.gz 0:125 1:125 A:1732100690;C:1624557456;G:1649046037;T:1722193010;N:798557 125 125     1732100690 1624557456 1649046037 1722193010 798557 SRX5016862 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.9585 0.95335 0.01902 0.01833 0.8131 0.81014 0.48431 0.493 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-16 Multi-stage Embryo Oocyte Reproductive System
49744 49744 SRR8197483 SRX5016861 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: unfertilized egg Z1 3 F Z1 3 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z1_3_1.fq.gz Z1_3_2.fq.gz fastq fastq 6657035500.0 26628142.0 Z1 3 1.fq.gz 0:125 1:125 A:1796541492;C:1535300915;G:1557971133;T:1766443902;N:778058 125 125     1796541492 1535300915 1557971133 1766443902 778058 SRX5016861 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.95543 0.94989 0.02312 0.02201 0.79689 0.79421 0.51212 0.51203 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-16 Multi-stage Embryo Oocyte Reproductive System
49745 49745 SRR8197484 SRX5016860 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: unfertilized egg Z1 2 F Z1 2 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z1_2_1.fq.gz Z1_2_2.fq.gz fastq fastq 8869328500.0 35477314.0 Z1 2 1.fq.gz 0:125 1:125 A:2367358711;C:2085652811;G:2116692954;T:2298597848;N:1026176 125 125     2367358711 2085652811 2116692954 2298597848 1026176 SRX5016860 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.95776 0.95084 0.01896 0.01811 0.79823 0.79608 0.49565 0.49345 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-18 Multi-stage Embryo Oocyte Reproductive System
49746 49746 SRR8197485 SRX5016859 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: unfertilized egg Z1 1 F Z1 1 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z1_1_1.fq.gz Z1_1_2.fq.gz fastq fastq 7205390500.0 28821562.0 Z1 1 1.fq.gz 0:125 1:125 A:1900562357;C:1700185416;G:1728383049;T:1875415232;N:844446 125 125     1900562357 1700185416 1728383049 1875415232 844446 SRX5016859 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.95593 0.95003 0.01844 0.01778 0.80064 0.80008 0.4858 0.48331 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-18 Multi-stage Embryo Oocyte Reproductive System
49747 49747 SRR8197486 SRX5016858 SRS4049994 SRP169068 PRJNA495892 Danio rerio Genome sequencing PRJNA495892 Whole Genome Sequencing Transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.     three samples of zebrafish unfertilized eggs and three samples zebrafish fries at the stage of prim5. Model organism or animal sample from Danio rerio The transcriptome data of zebrafish in two stages of unfertilized egg and prim 5.   isolate:zebrafish unfertilized eggs and zebrafish fries at the prim5 stage|dev stage:2 stages of unfertilized egg and prim 5|sex:pooled male and female|tissue:zebrafish in 2 stages of unfertilized egg and prim 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: prim5 stage Z2 2 F Z2 2 F The unfertilized eggs of zebrafish were taken as three samples Z1 1 Z1 2 and Z1 3 respectively. And the fries of zebrafish were taken as three samples Z2 1 Z2 2 and Z2 3 in the prim5 stage.     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP169068     Z2_2_2.fq.gz Z2_2_1.fq.gz fastq fastq 7724266250.0 30897065.0 Z2 2 1.fq.gz 0:125 1:125 A:1986625683;C:1864133349;G:1894026843;T:1978566785;N:913590 125 125     1986625683 1864133349 1894026843 1978566785 913590 SRX5016858 SRS4049994 SRA810793 Institute of Hydrobiology, Chinese Academy of Sciences|State Key Laboratory of Freshwater Ecology and Bio Institute of Hydrobiology, Chinese Academy of Sciences 2 0.95577 0.94831 0.01968 0.01899 0.80793 0.80667 0.48789 0.48551 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2018-11-16 Multi-stage Embryo Oocyte Reproductive System
58533 58533 SRR11355387 SRX7957249 SRS6343356 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 3 C2 3   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 320200327 C2 320200327 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_3_1.fq.gz C2_3_2.fq.gz fastq fastq 6857650800.0 45717672.0 C2 3 1.fq.gz 0:150 1:150 A:1826466263;C:1599272942;G:1580689630;T:1851144875;N:77090 150 150     1826466263 1599272942 1580689630 1851144875 77090 SRX7957249 SRS6343356 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93222   0.02854   0.75138   0.50759   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58534 58534 SRR11355388 SRX7957248 SRS6343355 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 2 C2 2   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 220200326 C2 220200326 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_2_1.fq.gz C2_2_2.fq.gz fastq fastq 6859954800.0 45733032.0 C2 2 1.fq.gz 0:150 1:150 A:1836618967;C:1591135182;G:1572318102;T:1859806048;N:76501 150 150     1836618967 1591135182 1572318102 1859806048 76501 SRX7957248 SRS6343355 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93237   0.03248   0.74663   0.5081   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58535 58535 SRR11355389 SRX7957247 SRS6343354 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 1 C2 1   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 120200325 C2 120200325 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_1_1.fq.gz C2_1_2.fq.gz fastq fastq 6618974400.0 44126496.0 C2 1 1.fq.gz 0:150 1:150 A:1774116288;C:1533828286;G:1511526952;T:1799423408;N:79466 150 150     1774116288 1533828286 1511526952 1799423408 79466 SRX7957247 SRS6343354 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.9326   0.02973   0.75426   0.50678   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58536 58536 SRR11355390 SRX7957246 SRS6343353 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 3 C1 3   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 320200324 C1 320200324 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_3_1.fq.gz C1_3_2.fq.gz fastq fastq 6837729600.0 45584864.0 C1 3 1.fq.gz 0:150 1:150 A:1831266308;C:1587032733;G:1565071069;T:1853950421;N:409069 150 150     1831266308 1587032733 1565071069 1853950421 409069 SRX7957246 SRS6343353 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93541   0.03212   0.74681   0.50268   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58537 58537 SRR11355391 SRX7957245 SRS6343352 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 2 C1 2   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 220200323 C1 220200323 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_2_2.fq.gz C1_2_1.fq.gz fastq fastq 6860328000.0 45735520.0 C1 2 1.fq.gz 0:150 1:150 A:1838176072;C:1591277709;G:1569605888;T:1861063734;N:204597 150 150     1838176072 1591277709 1569605888 1861063734 204597 SRX7957245 SRS6343352 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93763   0.033   0.74617   0.50287   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58538 58538 SRR11355392 SRX7957244 SRS6343351 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 1 C1 1   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 120200322 C1 120200322 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_1_1.fq.gz C1_1_2.fq.gz fastq fastq 6865547700.0 45770318.0 C1 1 1.fq.gz 0:150 1:150 A:1841774713;C:1591288582;G:1570400871;T:1861867728;N:215806 150 150     1841774713 1591288582 1570400871 1861867728 215806 SRX7957244 SRS6343351 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93567   0.03152   0.74653   0.50239   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58539 58539 SRR11355393 SRX7957243 SRS6343350 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 3 C0 3   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 320200321 C0 320200321 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_3_1.fq.gz C0_3_2.fq.gz fastq fastq 6824622600.0 45497484.0 C0 3 1.fq.gz 0:150 1:150 A:1833660953;C:1578510104;G:1558095174;T:1854128169;N:228200 150 150     1833660953 1578510104 1558095174 1854128169 228200 SRX7957243 SRS6343350 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93758   0.0323   0.75024   0.50852   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58540 58540 SRR11355394 SRX7957242 SRS6343349 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 2 C0 2   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 220200320 C0 220200320 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_2_2.fq.gz C0_2_1.fq.gz fastq fastq 6819326400.0 45462176.0 C0 2 1.fq.gz 0:150 1:150 A:1837661215;C:1571877614;G:1550458835;T:1859103408;N:225328 150 150     1837661215 1571877614 1550458835 1859103408 225328 SRX7957242 SRS6343349 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93697   0.0339   0.74793   0.5035   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58541 58541 SRR11355395 SRX7957241 SRS6343348 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 1 C0 1   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 120200319 C0 120200319 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_1_1.fq.gz C0_1_2.fq.gz fastq fastq 7030804800.0 46872032.0 C0 1 1.fq.gz 0:150 1:150 A:1891469955;C:1624531422;G:1603124564;T:1911444454;N:234405 150 150     1891469955 1624531422 1603124564 1911444454 234405 SRX7957241 SRS6343348 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93519   0.0328   0.74602   0.48272   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
76464 76464 SRR24957216 SRX20715257 SRS18006806 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         WT1   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female WT1 WT1 355bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     WT_3_1.fq.gz WT_3_2.fq.gz fastq fastq 7193246700.0 23977489.0 WT 3 1.fq.gz 0:150 1:150 A:1899215463;C:1704365793;G:1700125063;T:1889255858;N:284523 150 150     1899215463 1704365793 1700125063 1889255858 284523 SRX20715257 SRS18006806 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.96018 0.95972 0.02154 0.02156 0.74783 0.74752 0.47659 0.4779 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System
76465 76465 SRR24957217 SRX20715256 SRS18006805 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         WT2   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female WT2 WT2 354bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     WT_2_1.fq.gz WT_2_2.fq.gz fastq fastq 6692745000.0 22309150.0 WT 2 1.fq.gz 0:150 1:150 A:1754867143;C:1599183933;G:1593183572;T:1745248372;N:261980 150 150     1754867143 1599183933 1593183572 1745248372 261980 SRX20715256 SRS18006805 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.95144 0.95135 0.02095 0.02093 0.74783 0.74797 0.47881 0.48019 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System
76466 76466 SRR24957218 SRX20715255 SRS18006804 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         WT3   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female WT3 WT3 353bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     WT_1_1.fq.gz WT_1_2.fq.gz fastq fastq 6063572400.0 20211908.0 WT 1 1.fq.gz 0:150 1:150 A:1587049845;C:1452167103;G:1446522880;T:1577597629;N:234943 150 150     1587049845 1452167103 1446522880 1577597629 234943 SRX20715255 SRS18006804 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.95503 0.95566 0.0198 0.0198 0.75189 0.75205 0.48404 0.48544 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System
76467 76467 SRR24957219 SRX20715254 SRS18006803 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         cyp21a2 1   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female cyp21a2 1 cyp21a2 1 352bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     cyp21a_3_1.fq.gz cyp21a_3_2.fq.gz fastq fastq 6995989200.0 23319964.0 cyp21a 3 1.fq.gz 0:150 1:150 A:1835165397;C:1669847288;G:1667209860;T:1823520176;N:246479 150 150     1835165397 1669847288 1667209860 1823520176 246479 SRX20715254 SRS18006803 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.95816 0.95833 0.02281 0.02265 0.74823 0.7487 0.47417 0.47569 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System
76468 76468 SRR24957220 SRX20715253 SRS18006802 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         cyp21a2 2   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female cyp21a2 2 cyp21a2 2 351bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     cyp21a_2_1.fq.gz cyp21a_2_2.fq.gz fastq fastq 7468139100.0 24893797.0 cyp21a 2 1.fq.gz 0:150 1:150 A:1948988233;C:1794014163;G:1789429610;T:1935404071;N:303023 150 150     1948988233 1794014163 1789429610 1935404071 303023 SRX20715253 SRS18006802 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.95662 0.95647 0.01866 0.01855 0.75067 0.75043 0.48064 0.48347 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System
76469 76469 SRR24957221 SRX20715252 SRS18006801 SRP444571 PRJNA984937 Danio rerio Raw sequence reads PRJNA984937 Whole Genome Sequencing To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries.         cyp21a2 3   strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 6|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: female cyp21a2 3 cyp21a2 3 350bp     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP444571     cyp21a_1_1.fq.gz cyp21a_1_2.fq.gz fastq fastq 6687974400.0 22293248.0 cyp21a 1 1.fq.gz 0:150 1:150 A:1760782650;C:1592288096;G:1584534831;T:1750325587;N:43236 150 150     1760782650 1592288096 1584534831 1750325587 43236 SRX20715252 SRS18006801 SRA1657875 Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences Chinese Academy of Fishery Sciences 2 0.95394 0.95415 0.02019 0.0204 0.74921 0.74834 0.47901 0.47809 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2023-06-19 Adult Adult Gonad Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;