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25 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "RANDOM" and tissue_curation_coarse = "Undetermined"

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devstage_curation 2

tissue_curation_coarse 1

  • Undetermined · 25 ✖

tissue_curation 1

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM · 25 ✖

experiment.library_layout 1

  • PAIRED · 25 ✖

devstage_curation_coarse 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
41 41 DRR408245 DRX393851 DRS407176 DRP012042 PRJDB14275 Zebrafish EN/ENCDC RNA seq DRP012042 Transcriptome Analysis A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.     zebrafish 5 day GFP positive enteric neurons replicate 3 zebrafish EN replicate 3 SAMD00529465   sample name:zebrafish EN replicate 3|biological replicate:eneteric neurons 3|strain:TgSAGFFLF219B; uas:gfp                 NextSeq 550 paired end sequencing of SAMD00529465 DRX393851 190326ENvsNC N703 5day;EntericNeuron;rep3 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA NextSeq 550 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012042 NextSeq 550 paired end sequencing of SAMD00529465       3729799291.0 23985772.0 DRR408245 0:77.75 1:77.75 A:978752781;C:879988139;G:903976580;T:962122970;N:4958821 77 77     978752781 879988139 903976580 962122970 4958821 DRX393851 DRS407176 DRA014886 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Japan 2024-09-22 Undetermined Larval Undetermined Undetermined
42 42 DRR408244 DRX393850 DRS407175 DRP012042 PRJDB14275 Zebrafish EN/ENCDC RNA seq DRP012042 Transcriptome Analysis A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.     zebrafish 5 day GFP positive enteric neurons replicate 2 zebrafish EN replicate 2 SAMD00529464   sample name:zebrafish EN replicate 2|biological replicate:eneteric neurons 2|strain:TgSAGFFLF218B; uas:gfp                 NextSeq 550 paired end sequencing of SAMD00529464 DRX393850 190326ENvsNC N702 5day;EntericNeuron;rep2 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA NextSeq 550 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012042 NextSeq 550 paired end sequencing of SAMD00529464       3315994810.0 21477755.0 DRR408244 0:77.19 1:77.20 A:873970427;C:778042505;G:798459853;T:859611841;N:5910184 77 77     873970427 778042505 798459853 859611841 5910184 DRX393850 DRS407175 DRA014886 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Japan 2024-09-22 Undetermined Larval Undetermined Undetermined
43 43 DRR408243 DRX393849 DRS407174 DRP012042 PRJDB14275 Zebrafish EN/ENCDC RNA seq DRP012042 Transcriptome Analysis A project to find differential expressed genes between enteric neurons ENs and enteric neural crest derived cells ENCDCs in larval zebrafish gut. We dissected guts of transgenic line TgSAGFFLF217B; uas:gfp for ENs and Tgsox10:cre; EF1alpha:loxP gfp loxP dsred for ENCDCs and isolated GFP+ ENs and dsRed+ ENCDCs. Three duplicates for each of ENs and ENCDCs are prepared. Libraries for NGS are prepared using SMART Seq V4 Ultra Low Input RNA Kit.     zebrafish 5 day GFP positive enteric neurons replicate 1 zebrafish EN replicate 1 SAMD00529463   sample name:zebrafish EN replicate 1|biological replicate:eneteric neurons 1|strain:TgSAGFFLF217B; uas:gfp                 NextSeq 550 paired end sequencing of SAMD00529463 DRX393849 190326ENvsNC N701 5day;EntericNeuron;rep1 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA NextSeq 550 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>160</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>81</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012042 NextSeq 550 paired end sequencing of SAMD00529463       2999501518.0 19455440.0 DRR408243 0:77.08 1:77.09 A:788053541;C:705895776;G:724185148;T:775760738;N:5606315 77 77     788053541 705895776 724185148 775760738 5606315 DRX393849 DRS407174 DRA014886 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Japan 2024-09-22 Undetermined Larval Undetermined Undetermined
65842 65842 SRR15646741 SRX11943797 SRS9954428 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         KP C   isolate:Fresh tea leaves|age:13 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia KP C KP C zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     KP-C_1.fq.gz KP-C_2.fq.gz fastq fastq 15119561100.0 50398537.0 KP C 1.fq.gz 0:150 1:150 A:4199977746;C:3373965332;G:3340795484;T:4199564734;N:5257804 150 150     4199977746 3373965332 3340795484 4199564734 5257804 SRX11943797 SRS9954428 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94575 0.93866 0.11928 0.11816 0.6578 0.66188 0.46916 0.46929 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65843 65843 SRR15646742 SRX11943796 SRS9954427 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         KP B   isolate:Fresh tea leaves|age:12 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia KP B KP B zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     KP-B_1.fq.gz KP-B_2.fq.gz fastq fastq 15136008000.0 50453360.0 KP B 1.fq.gz 0:150 1:150 A:4207311279;C:3372650612;G:3329889166;T:4220543122;N:5613821 150 150     4207311279 3372650612 3329889166 4220543122 5613821 SRX11943796 SRS9954427 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94501 0.93639 0.13097 0.12966 0.66011 0.66324 0.47057 0.46916 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65844 65844 SRR15646743 SRX11943795 SRS9954426 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         KP A   isolate:Fresh tea leaves|age:11 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia KP A KP A zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     KP-A_1.fq.gz KP-A_2.fq.gz fastq fastq 15101107800.0 50337026.0 KP A 1.fq.gz 0:150 1:150 A:4230648761;C:3333194101;G:3286438045;T:4245689507;N:5137386 150 150     4230648761 3333194101 3286438045 4245689507 5137386 SRX11943795 SRS9954426 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94262 0.93382 0.12796 0.12632 0.66044 0.66413 0.46665 0.46809 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65845 65845 SRR15646744 SRX11943794 SRS9954425 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         Control   isolate:Fresh tea leaves|age:10 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia Control Control zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     Control_1.fq.gz Control_2.fq.gz fastq fastq 15162870900.0 50542903.0 Control 1.fq.gz 0:150 1:150 A:4201431091;C:3391463446;G:3336650829;T:4228305627;N:5019907 150 150     4201431091 3391463446 3336650829 4228305627 5019907 SRX11943794 SRS9954425 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94591 0.93718 0.12576 0.12432 0.65303 0.65764 0.47398 0.4772 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65846 65846 SRR15646745 SRX11943793 SRS9954424 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         WT8dpf   isolate:Fresh tea leaves|age:19 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia WT8dpf WT8dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     WT8dpf_2.fq.gz WT8dpf_1.fq.gz fastq fastq 14960604900.0 49868683.0 WT8dpf 1.fq.gz 0:150 1:150 A:4116429948;C:3366634041;G:3311720522;T:4161497787;N:4322602 150 150     4116429948 3366634041 3311720522 4161497787 4322602 SRX11943793 SRS9954424 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94296 0.93434 0.13087 0.12937 0.66093 0.66458 0.4602 0.46456 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65847 65847 SRR15646746 SRX11943792 SRS9954423 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         WT5dpf   isolate:Fresh tea leaves|age:18 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia WT5dpf WT5dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349   loader:fastq load.py WT5dpf_1.fq.gz WT5dpf_2.fq.gz fastq fastq 14747612700.0 49158709.0 WT5dpf 1.fq.gz 0:150 1:150 A:4142756805;C:3242464992;G:3189348063;T:4168881893;N:4160947 150 150     4142756805 3242464992 3189348063 4168881893 4160947 SRX11943792 SRS9954423 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.9418 0.93416 0.14078 0.13949 0.6551 0.6593 0.47594 0.47983 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-30 Larval Larval Undetermined Undetermined
65848 65848 SRR15646747 SRX11943791 SRS9954422 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         rank8dpf   isolate:Fresh tea leaves|age:17 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia rank8dpf rank8dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349   loader:fastq load.py rank8dpf_1.fq.gz rank8dpf_2.fq.gz fastq fastq 14948205900.0 49827353.0 rank8dpf 1.fq.gz 0:150 1:150 A:4081087088;C:3398045812;G:3350184197;T:4114230703;N:4658100 150 150     4081087088 3398045812 3350184197 4114230703 4658100 SRX11943791 SRS9954422 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.95 0.94168 0.11009 0.10893 0.6718 0.67598 0.47481 0.46639 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-30 Larval Larval Undetermined Undetermined
65849 65849 SRR15646748 SRX11943790 SRS9954421 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         rank5dpf   isolate:Fresh tea leaves|age:16 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia rank5dpf rank5dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349     rank5dpf_1.fq.gz rank5dpf_2.fq.gz fastq fastq 14975171400.0 49917238.0 rank5dpf 1.fq.gz 0:150 1:150 A:4167996270;C:3327904028;G:3309240567;T:4164705051;N:5325484 150 150     4167996270 3327904028 3309240567 4164705051 5325484 SRX11943790 SRS9954421 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.94814 0.93875 0.12749 0.12634 0.65551 0.65999 0.47677 0.47759 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-27 Larval Larval Undetermined Undetermined
65850 65850 SRR15646749 SRX11943789 SRS9954419 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         nr3c18dpf   isolate:Fresh tea leaves|age:15 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia nr3c18dpf nr3c18dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349   loader:fastq load.py nr3c18dpf_1.fq.gz nr3c18dpf_2.fq.gz fastq fastq 15185892600.0 50619642.0 nr3c18dpf 1.fq.gz 0:150 1:150 A:4209926678;C:3389006682;G:3351176930;T:4231096763;N:4685547 150 150     4209926678 3389006682 3351176930 4231096763 4685547 SRX11943789 SRS9954419 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.93279 0.9251 0.14056 0.13875 0.65979 0.6636 0.4659 0.46527 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-30 Larval Larval Undetermined Undetermined
65851 65851 SRR15646750 SRX11943788 SRS9954420 SRP334349 PRJNA758122 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia PRJNA758122 Other To explore Pathological Features of Klebsiella pneumonia         nr3c15dpf   isolate:Fresh tea leaves|age:14 day post budding|sex:neuter|tissue:zebrafish|BioSampleModel:Model organism or animal                 Use of Zebrafish Larvae as Host Model to Evaluate Different Virulence Traits and Pathological Features of Klebsiella pneumonia nr3c15dpf nr3c15dpf zebrafish larvae     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP334349   loader:fastq load.py nr3c15dpf_1.fq.gz nr3c15dpf_2.fq.gz fastq fastq 14941541400.0 49805138.0 nr3c15dpf 1.fq.gz 0:150 1:150 A:4146253364;C:3338448944;G:3296667977;T:4155264214;N:4906901 150 150     4146253364 3338448944 3296667977 4155264214 4906901 SRX11943788 SRS9954420 SRA1284498 The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University|Department of Laboratory Medicine The Affiliated Wuxi No. 2 Peoples Hospital of Nanjing Medical University 2 0.9394 0.93095 0.11603 0.1146 0.66101 0.66472 0.47213 0.4716 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-08-30 Larval Larval Undetermined Undetermined
72501 72501 SRR22825755 SRX18785210 SRS16219316 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AEA+AM251 11 AEAI 11   strain:Tuebingen|age:14 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AEA+AM251 11 AEAI 11 AEAI 11 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75314_ID2247_15-AEAI-11_S1_L001_R1_001.fastq.gz 75314_ID2247_15-AEAI-11_S1_L001_R2_001.fastq.gz fastq fastq 47387394300.0 157957981.0 75314 ID2247 15 AEAI 11 S1 L001 R1 001.fastq.gz 0:150 1:150 A:12015588300;C:11109455602;G:11632652316;T:11792962272;N:836735810 150 150     12015588300 11109455602 11632652316 11792962272 836735810 SRX18785210 SRS16219316 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.80548 0.785 0.15239 0.14324 0.72506 0.72857 0.53992 0.52636 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72502 72502 SRR22825756 SRX18785209 SRS16219315 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AM251 20 I20   strain:Tuebingen|age:13 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AM251 20 I20 I20 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75313_ID2247_12-I20_S1_L001_R1_001.fastq.gz 75313_ID2247_12-I20_S1_L001_R2_001.fastq.gz fastq fastq 48485610600.0 161618702.0 75313 ID2247 12 I20 S1 L001 R1 001.fastq.gz 0:150 1:150 A:12691502023;C:10923419225;G:11431154921;T:12461179341;N:978355090 150 150     12691502023 10923419225 11431154921 12461179341 978355090 SRX18785209 SRS16219315 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.85808 0.837 0.20472 0.19205 0.70613 0.70952 0.53144 0.51857 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72503 72503 SRR22825757 SRX18785208 SRS16219314 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AM251 15 I15   strain:Tuebingen|age:12 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AM251 15 I15 I15 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75312_ID2247_11-I15_S1_L001_R1_001.fastq.gz 75312_ID2247_11-I15_S1_L001_R2_001.fastq.gz fastq fastq 33659675100.0 112198917.0 75312 ID2247 11 I15 S1 L001 R1 001.fastq.gz 0:150 1:150 A:8242817027;C:7679045095;G:8053201281;T:8056078330;N:1628533367 150 150     8242817027 7679045095 8053201281 8056078330 1628533367 SRX18785208 SRS16219314 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.71281 0.69435 0.1543 0.14395 0.73641 0.73843 0.5533 0.52513 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72504 72504 SRR22825758 SRX18785207 SRS16219313 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AM251 8 I8   strain:Tuebingen|age:11 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AM251 8 I8 I8 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75311_ID2247_10-I8_S1_L001_R1_001.fastq.gz 75311_ID2247_10-I8_S1_L001_R2_001.fastq.gz fastq fastq 46012909200.0 153376364.0 75311 ID2247 10 I8 S1 L001 R1 001.fastq.gz 0:150 1:150 A:11767528698;C:10822045229;G:11304250537;T:11593778740;N:525305996 150 150     11767528698 10822045229 11304250537 11593778740 525305996 SRX18785207 SRS16219313 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.83282 0.81532 0.17871 0.16959 0.71747 0.72013 0.4435 0.43261 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72505 72505 SRR22825759 SRX18785206 SRS16219312 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Anandamide21 AEA21   strain:Tuebingen|age:10 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Anandamide21 AEA21 AEA21 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75310_ID2247_9-AEA21_S1_L001_R1_001.fastq.gz 75310_ID2247_9-AEA21_S1_L001_R2_001.fastq.gz fastq fastq 45584419800.0 151948066.0 75310 ID2247 9 AEA21 S1 L001 R1 001.fastq.gz 0:150 1:150 A:11585867395;C:10566641070;G:11060643578;T:11410158545;N:961109212 150 150     11585867395 10566641070 11060643578 11410158545 961109212 SRX18785206 SRS16219312 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.80654 0.79265 0.18045 0.17118 0.71601 0.71983 0.53246 0.51838 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72506 72506 SRR22825760 SRX18785205 SRS16219311 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Anandamide17 AEA17   strain:Tuebingen|age:9 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Anandamide17 AEA17 AEA17 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75309_ID2247_8-AEA17_S2_L001_R1_001.fastq.gz 75309_ID2247_8-AEA17_S2_L001_R2_001.fastq.gz fastq fastq 25218034709.0 84192687.0 75309 ID2247 8 AEA17 S2 L001 R1 001.fastq.gz 0:149.76 1:149.77 A:6410794152;C:5761427891;G:6054866928;T:6298337440;N:692608298 149 149     6410794152 5761427891 6054866928 6298337440 692608298 SRX18785205 SRS16219311 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.82784 0.8141 0.18326 0.17391 0.71305 0.7135 0.53896 0.5232 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72507 72507 SRR22825761 SRX18785204 SRS16219310 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Anandamide2 AEA2   strain:Tuebingen|age:8 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Anandamide2 AEA2 AEA2 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75308_ID2247_6-AEA2_S1_L001_R1_001.fastq.gz 75308_ID2247_6-AEA2_S1_L001_R2_001.fastq.gz fastq fastq 23559118200.0 78530394.0 75308 ID2247 6 AEA2 S1 L001 R1 001.fastq.gz 0:150 1:150 A:5717448646;C:5665983961;G:5937133789;T:5641752342;N:596799462 150 150     5717448646 5665983961 5937133789 5641752342 596799462 SRX18785204 SRS16219310 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.75518 0.74329 0.12361 0.11925 0.74158 0.74247 0.53501 0.53288 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72508 72508 SRR22825762 SRX18785203 SRS16219309 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Control18 C18   strain:Tuebingen|age:7 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Control18 C18 C18 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75306_ID2247_3-C18_S1_L001_R1_001.fastq.gz 75306_ID2247_3-C18_S1_L001_R2_001.fastq.gz fastq fastq 37318254600.0 124394182.0 75306 ID2247 3 C18 S1 L001 R1 001.fastq.gz 0:150 1:150 A:9631338019;C:8497878263;G:8881097888;T:9452800014;N:855140416 150 150     9631338019 8497878263 8881097888 9452800014 855140416 SRX18785203 SRS16219309 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.84138 0.82293 0.18744 0.1764 0.71429 0.71646 0.52458 0.44549 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72509 72509 SRR22825763 SRX18785202 SRS16219308 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AEA+AM251 13 AEAI 13   strain:Tuebingen|age:16 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AEA+AM251 13 AEAI 13 AEAI 13 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75316_ID2247_17-AEAI-13_S1_L001_R1_001.fastq.gz 75316_ID2247_17-AEAI-13_S1_L001_R2_001.fastq.gz fastq fastq 57779650800.0 192598836.0 75316 ID2247 17 AEAI 13 S1 L001 R1 001.fastq.gz 0:150 1:150 A:14525195761;C:13554923898;G:14115096375;T:14309757429;N:1274677337 150 150     14525195761 13554923898 14115096375 14309757429 1274677337 SRX18785202 SRS16219308 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.85294 0.83655 0.15986 0.15236 0.71837 0.72072 0.52444 0.4253 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72510 72510 SRR22825764 SRX18785201 SRS16219307 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       AEA+AM251 16 AEAI 16   strain:Tuebingen|age:15 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 AEA+AM251 16 AEAI 16 AEAI 16 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75315_ID2247_16-AEAI-16_S1_L001_R1_001.fastq.gz 75315_ID2247_16-AEAI-16_S1_L001_R2_001.fastq.gz fastq fastq 50255473200.0 167518244.0 75315 ID2247 16 AEAI 16 S1 L001 R1 001.fastq.gz 0:150 1:150 A:12779342510;C:11623739508;G:12108778045;T:12581775823;N:1161837314 150 150     12779342510 11623739508 12108778045 12581775823 1161837314 SRX18785201 SRS16219307 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.8591 0.84033 0.17922 0.17139 0.71413 0.71699 0.44384 0.51724 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72511 72511 SRR22825765 SRX18785200 SRS16219306 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Control10 C10   strain:Tuebingen|age:6 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Control10 C10 C10 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75305_ID2247_2-C10_S1_L001_R1_001.fastq.gz 75305_ID2247_2-C10_S1_L001_R2_001.fastq.gz fastq fastq 45091749000.0 150305830.0 75305 ID2247 2 C10 S1 L001 R1 001.fastq.gz 0:150 1:150 A:11132580416;C:10762768723;G:11256208654;T:10952392110;N:987799097 150 150     11132580416 10762768723 11256208654 10952392110 987799097 SRX18785200 SRS16219306 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.75396 0.73702 0.14665 0.139 0.74229 0.74446 0.55074 0.53284 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined
72512 72512 SRR22825766 SRX18785199 SRS16219305 SRP414053 PRJNA911178 Zebrafish HCT116 xenograft model Transcriptome PRJNA911178 Other A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer       Control7 C7   strain:Tuebingen|age:5 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal                 Control7 C7 C7 Standard libarary     RNA-Seq TRANSCRIPTOMIC RANDOM PAIRED ILLUMINA Illumina NovaSeq 6000   SRP414053     75304_ID2247_1-C7_S1_L001_R1_001.fastq.gz 75304_ID2247_1-C7_S1_L001_R2_001.fastq.gz fastq fastq 51893266500.0 172977555.0 75304 ID2247 1 C7 S1 L001 R1 001.fastq.gz 0:150 1:150 A:13850871712;C:11502631920;G:12111417950;T:13450528704;N:977816214 150 150     13850871712 11502631920 12111417950 13450528704 977816214 SRX18785199 SRS16219305 SRA1562591 Universita Politecnica delle Marche|Life Sciences Universita Politecnica delle Marche 2 0.82097 0.78914 0.23951 0.21883 0.71607 0.72042 0.54254 0.52918 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Italy 2022-12-20 Larval Larval Undetermined Undetermined

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;