metadata: run_metadata: 85 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PolyA" and tissue_curation

85 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PolyA" and tissue_curation_coarse = "Reproductive System"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.PMIDs	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
29187	29187	SRR8176747	SRX4996876	SRS4031879	SRP480945	PRJNA1055160	Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain	PRJNA1055160	Other	We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf	pubmed:38529407	Nadia 19dpf ZZ Gonad Single Cell RNA Seq	Nadia 19dpf ZZ Gonad Single Cell RNA Seq	strain:Nadia\|age:19 dpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	scRNA Seq of Danio rerio: Nadia 19dpf ZZ gonad	Nadia 19dpf ZZ gonad	Nadia 19dpf ZZ gonad	A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP480945	loader:fastq load.py			15090036999.0	107021539.0	zz 19NAmale I1 001.fastq.gz	0:8 1:133	A:4154103253;C:3402890354;G:3765557416;T:3755723849;N:11762127	8	133	4154103253	3402890354	3765557416	3755723849	11762127	SRX4996876	SRS4031879	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon												T	B	sc-like readlen	illumina	nextseq	unknown	poly_a	unknown	sc	single_cell_droplet	10x	United States	2018-11-08	Larval	Larval	Gonad	Reproductive System
29188	29188	SRR8176753	SRX4996870	SRS4031878	SRP480945	PRJNA1055160	Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain	PRJNA1055160	Other	We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf	pubmed:38529407	Nadia 30dpf ZZ Gonad Single Cell RNA Seq	Nadia 30dpf ZZ Gonad Single Cell RNA Seq	strain:Nadia\|age:30 dpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	scRNA Seq of Danio rerio: Nadia 30dpf ZZ gonad	Nadia 30dpf ZZ gonad	Nadia 30dpf ZZ gonad	A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP480945	loader:fastq load.py			23587173438.0	167284918.0	1 I1 001.fastq.gz	0:8 1:133	A:6732844252;C:4934497997;G:5685086026;T:6219863789;N:14881374	8	133	6732844252	4934497997	5685086026	6219863789	14881374	SRX4996870	SRS4031878	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon												T	B	sc-like readlen	illumina	nextseq	unknown	poly_a	unknown	sc	single_cell_droplet	10x	United States	2018-11-08	Juvenile	Juvenile	Gonad	Reproductive System
29189	29189	SRR8176754	SRX4996869	SRS4031877	SRP480945	PRJNA1055160	Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain	PRJNA1055160	Other	We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf	pubmed:38529407	Nadia 30dpf ZW Gonad Single Cell RNA Seq	Nadia 30dpf ZW Gonad Single Cell RNA Seq	strain:Nadia\|age:30 dpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	scRNA Seq of Danio rerio: Nadia 30dpf ZW gonad	Nadia 30dpf ZW gonad	Nadia 30dpf ZW gonad	A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP480945	loader:fastq load.py			43358808480.0	307509280.0	2 I1 001.fastq.gz	0:8 1:133	A:12290612367;C:8880655083;G:10261318751;T:11898771792;N:27450487	8	133	12290612367	8880655083	10261318751	11898771792	27450487	SRX4996869	SRS4031877	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon												T	B	sc-like readlen	illumina	nextseq	unknown	poly_a	unknown	sc	single_cell_droplet	10x	United States	2018-11-08	Juvenile	Juvenile	Gonad	Reproductive System
29190	29190	SRR8176756	SRX4996867	SRS4031876	SRP480945	PRJNA1055160	Single cell RNA seq of Juvenile Zebrafish Gonads from the Nadia Strain	PRJNA1055160	Other	We used single cell RNA Seq 10x Genomics Chromium to profile the transcriptomes of undifferentiated ZZ and ZW gonads at 19 dpf and immature ZZ and ZW gonads at 30 dpf	pubmed:38529407	Nadia 19dpf ZW Gonad Single Cell RNA Seq	Nadia 19dpf ZW Gonad Single Cell RNA Seq	strain:Nadia\|age:19 dpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	scRNA Seq of Danio rerio: Nadia 19dpf ZW gonad	Nadia 19dpf ZW gonad	Nadia 19dpf ZW gonad	A single cell suspension was prepared from the pooled gonads of five individuals. The sequencing library was prepared with the Chromium Single Cell 3 Library & Gel Bead Kit v2 10x Genomics.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP480945	loader:fastq load.py			17141425554.0	121570394.0	zw 19NAfem I1 001.fastq.gz	0:8 1:133	A:4656207219;C:3824531650;G:4322736498;T:4324676442;N:13273745	8	133	4656207219	3824531650	4322736498	4324676442	13273745	SRX4996867	SRS4031876	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon												T	B	sc-like readlen	illumina	nextseq	unknown	poly_a	unknown	sc	single_cell_droplet	10x	United States	2018-11-08	Larval	Larval	Gonad	Reproductive System
35501	35501	SRR32847793	SRX28130287	SRS24485200	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 10 4	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:10 μg/L neburon 0.01% DMSO\|replicate:replicate=biological replicate 4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 10 4	F0 10 4	neburon exposure	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_10_4_1.fq.gz F0_10_4_2.fq.gz	fastq fastq	6497409000.0	21658030.0	F0 10 4 1.fq.gz	0:150 1:150	A:1745298018;C:1515577060;G:1519077549;T:1717429364;N:27009	150	150	1745298018	1515577060	1519077549	1717429364	27009	SRX28130287	SRS24485200	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35502	35502	SRR32847794	SRX28130286	SRS24485199	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 10 3	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:10 μg/L neburon 0.01% DMSO\|replicate:replicate=biological replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 10 3	F0 10 3	neburon exposure	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_10_3_1.fq.gz F0_10_3_2.fq.gz	fastq fastq	6705529200.0	22351764.0	F0 10 3 1.fq.gz	0:150 1:150	A:1797300651;C:1567445869;G:1568865064;T:1771896545;N:21071	150	150	1797300651	1567445869	1568865064	1771896545	21071	SRX28130286	SRS24485199	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35503	35503	SRR32847795	SRX28130285	SRS24485197	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 10 2	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:10 μg/L neburon 0.01% DMSO\|replicate:replicate=biological replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 10 2	F0 10 2	neburon exposure	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_10_2_1.fq.gz F0_10_2_2.fq.gz	fastq fastq	6823369200.0	22744564.0	F0 10 2 1.fq.gz	0:150 1:150	A:1828401463;C:1587866904;G:1591331453;T:1815741011;N:28369	150	150	1828401463	1587866904	1591331453	1815741011	28369	SRX28130285	SRS24485197	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35504	35504	SRR32847796	SRX28130284	SRS24485198	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 10 1	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:10 μg/L neburon 0.01% DMSO\|replicate:replicate=biological replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 10 1	F0 10 1	neburon exposure	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_10_1_1.fq.gz F0_10_1_2.fq.gz	fastq fastq	6855193200.0	22850644.0	F0 10 1 1.fq.gz	0:150 1:150	A:1839056548;C:1598965863;G:1602365208;T:1814777552;N:28029	150	150	1839056548	1598965863	1602365208	1814777552	28029	SRX28130284	SRS24485198	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University	2	0.93021	0.93183	0.02479	0.02475	0.75824	0.75751	0.48861	0.48782	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35505	35505	SRR32847797	SRX28130283	SRS24485196	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 0 4	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:Solvent control 0.01% DMSO\|replicate:replicate=biological replicate 4\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 0 4	F0 0 4	Solvent control	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_0_4_1.fq.gz F0_0_4_2.fq.gz	fastq fastq	6202510200.0	20675034.0	F0 0 4 1.fq.gz	0:150 1:150	A:1638935187;C:1475225232;G:1473642403;T:1614681504;N:25874	150	150	1638935187	1475225232	1473642403	1614681504	25874	SRX28130283	SRS24485196	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35506	35506	SRR32847798	SRX28130282	SRS24485195	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 0 3	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:Solvent control 0.01% DMSO\|replicate:replicate=biological replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 0 3	F0 0 3	Solvent control	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_0_3_1.fq.gz F0_0_3_2.fq.gz	fastq fastq	6143312100.0	20477707.0	F0 0 3 1.fq.gz	0:150 1:150	A:1643045680;C:1434021639;G:1442426325;T:1623793440;N:25016	150	150	1643045680	1434021639	1442426325	1623793440	25016	SRX28130282	SRS24485195	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University	2	0.93524	0.93689	0.02456	0.02453	0.76053	0.76023	0.49883	0.49923	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35507	35507	SRR32847799	SRX28130281	SRS24485194	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 0 2	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:Solvent control 0.01% DMSO\|replicate:replicate=biological replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 0 2	F0 0 2	Solvent control	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_0_2_1.fq.gz F0_0_2_2.fq.gz	fastq fastq	6669509400.0	22231698.0	F0 0 2 1.fq.gz	0:150 1:150	A:1772820815;C:1570566452;G:1575974746;T:1750118680;N:28707	150	150	1772820815	1570566452	1575974746	1750118680	28707	SRX28130281	SRS24485194	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University	2	0.92506	0.92548	0.02275	0.02262	0.76319	0.76299	0.48685	0.48655	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
35508	35508	SRR32847800	SRX28130280	SRS24485193	SRP572931	PRJNA1241724	Evaluating the Effects of Neburon Exposure on Ovarian Folliculogenesis Using Zebrafish and Mouse Granulosa Cell Line	PRJNA1241724	Other	To explore the effect of neburon on the reproductive system of zebrafish females four ovaries of neburon and four ovaries of vehicle control were selected for transcriptome sequencing.			F0 0 1	strain:AB\|age:150 dpf\|collection date:2023 03 08\|geo loc name:China:Wuhan\|sex:female\|tissue:ovaries\|treatment:Solvent control 0.01% DMSO\|replicate:replicate=biological replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of danio rerio: adult female ovary	F0 0 1	F0 0 1	Solvent control	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP572931		F0_0_1_1.fq.gz F0_0_1_2.fq.gz	fastq fastq	6741448200.0	22471494.0	F0 0 1 1.fq.gz	0:150 1:150	A:1773536677;C:1594948330;G:1605028745;T:1767907203;N:27245	150	150	1773536677	1594948330	1605028745	1767907203	27245	SRX28130280	SRS24485193	SRA2099841	Xiamen University\|School of Life Sciences	Xiamen University	2	0.88124	0.88271	0.02386	0.02384	0.76382	0.76351	0.48919	0.48949	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-03-25	Adult	Adult	Gonad	Reproductive System
50606	50606	SRR8176748	SRX4996875	SRS4031874	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Ovary RNA Seq	Nadia Ovary RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZW ovary 6	Nadia ovary 6	Nadia ovary 6	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				2526133546.0	15988187.0	ovary6 TGAACTGG S7 R1 001.fastq.gz	0:79 1:79	A:657355119;C:595457526;G:623921016;T:649336614;N:63271	79	79	657355119	595457526	623921016	649336614	63271	SRX4996875	SRS4031874	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84475	0.83339	0.04288	0.04092	0.75603	0.75919	0.50123	0.5057	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50607	50607	SRR8176749	SRX4996874	SRS4031875	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Testis RNA Seq	Nadia Testis RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZZ testis 11	Nadia testis 11	Nadia testis 11	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1721218820.0	10893790.0	testis11 TCGAGCGT S11 R1 001.fastq.gz	0:79 1:79	A:459108490;C:394396990;G:412251655;T:455420798;N:40887	79	79	459108490	394396990	412251655	455420798	40887	SRX4996874	SRS4031875	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83918	0.82807	0.15135	0.14675	0.65309	0.66011	0.53104	0.53739	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50608	50608	SRR8176750	SRX4996873	SRS4031875	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Testis RNA Seq	Nadia Testis RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZZ testis 12	Nadia testis 12	Nadia testis 12	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				2309548884.0	14617398.0	testis12 CGATGTTT S12 R1 001.fastq.gz	0:79 1:79	A:619255750;C:527718671;G:550854739;T:611664017;N:55707	79	79	619255750	527718671	550854739	611664017	55707	SRX4996873	SRS4031875	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83656	0.82559	0.1791	0.17626	0.67409	0.68103	0.54375	0.54735	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50609	50609	SRR8176751	SRX4996872	SRS4031874	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Ovary RNA Seq	Nadia Ovary RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZW ovary 4	Nadia ovary 4	Nadia ovary 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1349110334.0	8538673.0	ovary4 TGAAGCCA S6 R1 001.fastq.gz	0:79 1:79	A:351675915;C:318327782;G:333254253;T:345819219;N:33165	79	79	351675915	318327782	333254253	345819219	33165	SRX4996872	SRS4031874	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.85194	0.84255	0.04389	0.04124	0.75759	0.76075	0.49459	0.48855	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50610	50610	SRR8176752	SRX4996871	SRS4031875	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Testis RNA Seq	Nadia Testis RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZZ testis 8	Nadia testis 8	Nadia testis 8	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1766900412.0	11182914.0	testis8 TCTGCTGT S9 R1 001.fastq.gz	0:79 1:79	A:472133204;C:404123547;G:423581171;T:467019329;N:43161	79	79	472133204	404123547	423581171	467019329	43161	SRX4996871	SRS4031875	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84005	0.8296	0.1457	0.14305	0.65675	0.66446	0.53125	0.52768	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50611	50611	SRR8176755	SRX4996868	SRS4031874	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Ovary RNA Seq	Nadia Ovary RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZW ovary 3	Nadia ovary 3	Nadia ovary 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1092861036.0	6916842.0	ovary3 GGCTACAG S5 R1 001.fastq.gz	0:79 1:79	A:277743962;C:263618484;G:276634303;T:274839154;N:25133	79	79	277743962	263618484	276634303	274839154	25133	SRX4996868	SRS4031874	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.85299	0.84324	0.03814	0.03621	0.76128	0.76475	0.50823	0.50889	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50612	50612	SRR8176757	SRX4996866	SRS4031875	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Testis RNA Seq	Nadia Testis RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZZ testis 7	Nadia testis 7	Nadia testis 7	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1567584992.0	9921424.0	testis7 GTACATCT S8 R1 001.fastq.gz	0:79 1:79	A:418694817;C:358272212;G:375519309;T:415060203;N:38451	79	79	418694817	358272212	375519309	415060203	38451	SRX4996866	SRS4031875	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83978	0.83023	0.13806	0.13491	0.65906	0.66645	0.52399	0.53148	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50613	50613	SRR8176758	SRX4996865	SRS4031875	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Testis RNA Seq	Nadia Testis RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZZ testis 9	Nadia testis 9	Nadia testis 9	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1534697292.0	9713274.0	testis9 TAGCTTGT S10 R1 001.fastq.gz	0:79 1:79	A:412476407;C:348503407;G:364951260;T:408730135;N:36083	79	79	412476407	348503407	364951260	408730135	36083	SRX4996865	SRS4031875	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83138	0.82285	0.14758	0.14389	0.6574	0.66413	0.52953	0.52739	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50614	50614	SRR8176759	SRX4996864	SRS4031874	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Ovary RNA Seq	Nadia Ovary RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZW ovary 1	Nadia ovary 1	Nadia ovary 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1071608456.0	6782332.0	ovary1 TTCTGTGT S3 R1 001.fastq.gz	0:79 1:79	A:274516983;C:256355100;G:269033426;T:271676618;N:26329	79	79	274516983	256355100	269033426	271676618	26329	SRX4996864	SRS4031874	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84619	0.84097	0.04695	0.04389	0.76067	0.76447	0.50582	0.50708	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
50615	50615	SRR8176760	SRX4996863	SRS4031874	SRP168249	PRJNA504448	RNA Seq of Zebrafish Gonads from the Nadia Strain	PRJNA504448	Transcriptome Analysis	The Nadia strain of zebrafish Danio rerio possesses a ZZ/ZW sex determination system. We used the BIOO NEXTflex Rapid Directional qRNA Seq Kit to generate strand specific RNA Seq libraries from adult testes and ovaries. Differential expression analysis of these two tissues identified a region of ovary specific transcriptional silencing along the heterochromatic q arm of chromosome 4.	pubmed:38466753	Nadia Ovary RNA Seq	Nadia Ovary RNA Seq	strain:Nadia\|age:3 mpf provider:John H. Postlethwait University of Oregon\|genotype:ZW\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: Nadia ZW ovary 2	Nadia ovary 2	Nadia ovary 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500	SRP168249				1576311490.0	9976655.0	ovary2 TGCTGATA S4 R1 001.fastq.gz	0:79 1:79	A:405771336;C:375502214;G:393737952;T:401262052;N:37936	79	79	405771336	375502214	393737952	401262052	37936	SRX4996863	SRS4031874	SRA807619	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84668	0.83664	0.03988	0.03778	0.75818	0.76126	0.50397	0.51091	79	79	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-11-08	Adult	Adult	Gonad	Reproductive System
53430	53430	SRR9875014	SRX6627775	SRS5187274	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT male ZZ 2	NA I LT male ZZ 2	NA I LT male ZZ 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_M_ZZ_2_S26_L003_R2_001.fastq.gz NA_I_LT_M_ZZ_2_S26_L003_R1_001.fastq.gz	fastq fastq	1172048410.0	3880955.0	NA I LT M ZZ 2 S26 L003 R1 001.fastq.gz	0:151 1:151	A:303777521;C:269121101;G:281279387;T:317654364;N:216037	151	151	303777521	269121101	281279387	317654364	216037	SRX6627775	SRS5187274	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83782	0.85031	0.12499	0.11617	0.66827	0.67779	0.48987	0.53823	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53431	53431	SRR9875015	SRX6627774	SRS5187274	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT male ZZ 1	NA I LT male ZZ 1	NA I LT male ZZ 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_M_ZZ_1_S25_L003_R1_001.fastq.gz NA_I_LT_M_ZZ_1_S25_L003_R2_001.fastq.gz	fastq fastq	1262754714.0	4181307.0	NA I LT M ZZ 1 S25 L003 R1 001.fastq.gz	0:151 1:151	A:327506426;C:291427032;G:305046130;T:338544693;N:230433	151	151	327506426	291427032	305046130	338544693	230433	SRX6627774	SRS5187274	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84333	0.85309	0.11752	0.10767	0.6784	0.68952	0.49474	0.54244	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53432	53432	SRR9875016	SRX6627773	SRS5187267	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT female ZW 4	NA I LT female ZW 4	NA I LT female ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_F_ZW_4_S12_L003_R1_001.fastq.gz NA_I_LT_F_ZW_4_S12_L003_R2_001.fastq.gz	fastq fastq	3142658206.0	10406153.0	NA I LT F ZW 4 S12 L003 R1 001.fastq.gz	0:151 1:151	A:803643290;C:741672825;G:773732722;T:823029025;N:580344	151	151	803643290	741672825	773732722	823029025	580344	SRX6627773	SRS5187267	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.85445	0.8663	0.02726	0.02576	0.75077	0.75637	0.51842	0.53326	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53433	53433	SRR9875017	SRX6627772	SRS5187267	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT female ZW 3	NA I LT female ZW 3	NA I LT female ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_F_ZW_3_S11_L003_R1_001.fastq.gz NA_I_LT_F_ZW_3_S11_L003_R2_001.fastq.gz	fastq fastq	2972327186.0	9842143.0	NA I LT F ZW 3 S11 L003 R1 001.fastq.gz	0:151 1:151	A:772664996;C:682505738;G:712485622;T:804106200;N:564630	151	151	772664996	682505738	712485622	804106200	564630	SRX6627772	SRS5187267	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84597	0.85833	0.03181	0.03076	0.74667	0.75243	0.46115	0.54017	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53434	53434	SRR9875018	SRX6627771	SRS5187273	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT neomale ZW 2	NA I LT neomale ZW 2	NA I LT neomale ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_NM_ZW_2_S30_L003_R2_001.fastq.gz NA_I_LT_NM_ZW_2_S30_L003_R1_001.fastq.gz	fastq fastq	1388131524.0	4596462.0	NA I LT NM ZW 2 S30 L003 R1 001.fastq.gz	0:151 1:151	A:364448184;C:318113393;G:331439463;T:373875285;N:255199	151	151	364448184	318113393	331439463	373875285	255199	SRX6627771	SRS5187273	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83159	0.83772	0.11329	0.10386	0.66845	0.67971	0.43992	0.54354	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53435	53435	SRR9875019	SRX6627770	SRS5187273	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT neomale ZW 1	NA I LT neomale ZW 1	NA I LT neomale ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_NM_ZW_1_S29_L003_R1_001.fastq.gz NA_I_LT_NM_ZW_1_S29_L003_R2_001.fastq.gz	fastq fastq	1367141920.0	4526960.0	NA I LT NM ZW 1 S29 L003 R1 001.fastq.gz	0:151 1:151	A:355472353;C:315601966;G:328252816;T:367560010;N:254775	151	151	355472353	315601966	328252816	367560010	254775	SRX6627770	SRS5187273	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82721	0.83543	0.12314	0.11296	0.66168	0.66991	0.48974	0.54682	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53436	53436	SRR9875020	SRX6627769	SRS5187274	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT male ZZ 4	NA I LT male ZZ 4	NA I LT male ZZ 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_M_ZZ_4_S28_L003_R1_001.fastq.gz NA_I_LT_M_ZZ_4_S28_L003_R2_001.fastq.gz	fastq fastq	1365836374.0	4522637.0	NA I LT M ZZ 4 S28 L003 R1 001.fastq.gz	0:151 1:151	A:359008023;C:311741908;G:325484573;T:369355002;N:246868	151	151	359008023	311741908	325484573	369355002	246868	SRX6627769	SRS5187274	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84371	0.85078	0.12305	0.11555	0.67099	0.68387	0.51573	0.55027	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53437	53437	SRR9875021	SRX6627768	SRS5187274	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT male ZZ 3	NA I LT male ZZ 3	NA I LT male ZZ 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_M_ZZ_3_S27_L003_R2_001.fastq.gz NA_I_LT_M_ZZ_3_S27_L003_R1_001.fastq.gz	fastq fastq	3359129088.0	11122944.0	NA I LT M ZZ 3 S27 L003 R1 001.fastq.gz	0:151 1:151	A:886542415;C:762896281;G:795735380;T:913345561;N:609451	151	151	886542415	762896281	795735380	913345561	609451	SRX6627768	SRS5187274	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83447	0.83971	0.12934	0.12096	0.66434	0.67596	0.49873	0.54409	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53438	53438	SRR9875022	SRX6627767	SRS5187273	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT neomale ZW 4	NA I LT neomale ZW 4	NA I LT neomale ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_NM_ZW_4_S32_L003_R2_001.fastq.gz NA_I_LT_NM_ZW_4_S32_L003_R1_001.fastq.gz	fastq fastq	1571536426.0	5203763.0	NA I LT NM ZW 4 S32 L003 R1 001.fastq.gz	0:151 1:151	A:412349187;C:356867868;G:373811327;T:428220032;N:288012	151	151	412349187	356867868	373811327	428220032	288012	SRX6627767	SRS5187273	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84259	0.85116	0.11975	0.11158	0.6588	0.6733	0.49032	0.53195	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53439	53439	SRR9875023	SRX6627766	SRS5187273	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT neomale ZW 3	NA I LT neomale ZW 3	NA I LT neomale ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_NM_ZW_3_S31_L003_R1_001.fastq.gz NA_I_LT_NM_ZW_3_S31_L003_R2_001.fastq.gz	fastq fastq	708049268.0	2344534.0	NA I LT NM ZW 3 S31 L003 R1 001.fastq.gz	0:151 1:151	A:187682393;C:160644598;G:167023665;T:192569320;N:129292	151	151	187682393	160644598	167023665	192569320	129292	SRX6627766	SRS5187273	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83306	0.8307	0.10791	0.09912	0.66736	0.68075	0.44399	0.52942	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53440	53440	SRR9875024	SRX6627765	SRS5187264	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT neomale ZW 1	NA II HT neomale ZW 1	NA II HT neomale ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZW_1_S49_L003_R1_001.fastq.gz NA_II_HT_M_ZW_1_S49_L003_R2_001.fastq.gz	fastq fastq	866947776.0	2870688.0	NA II HT M ZW 1 S49 L003 R1 001.fastq.gz	0:151 1:151	A:231683021;C:191944405;G:199270471;T:243895438;N:154441	151	151	231683021	191944405	199270471	243895438	154441	SRX6627765	SRS5187264	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.81935	0.8315	0.11248	0.10853	0.66362	0.68254	0.48789	0.52559	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53441	53441	SRR9875025	SRX6627764	SRS5187264	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT neomale ZW 2	NA II HT neomale ZW 2	NA II HT neomale ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZW_2_S50_L003_R1_001.fastq.gz NA_II_HT_M_ZW_2_S50_L003_R2_001.fastq.gz	fastq fastq	1238622196.0	4101398.0	NA II HT M ZW 2 S50 L003 R1 001.fastq.gz	0:151 1:151	A:326765637;C:281525180;G:292771467;T:337327822;N:232090	151	151	326765637	281525180	292771467	337327822	232090	SRX6627764	SRS5187264	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.81744	0.81778	0.1321	0.11944	0.6715	0.68061	0.48308	0.5461	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53442	53442	SRR9875026	SRX6627763	SRS5187271	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35231 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35231\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 3	NA II HT female ZW 3	NA II HT female ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_3_S19_L003_R1_001.fastq.gz NA_II_HT_F_ZW_3_S19_L003_R2_001.fastq.gz	fastq fastq	4332789470.0	14346985.0	NA II HT F ZW 3 S19 L003 R1 001.fastq.gz	0:151 1:151	A:1121567479;C:1001393901;G:1051112515;T:1157922069;N:793506	151	151	1121567479	1001393901	1051112515	1157922069	793506	SRX6627763	SRS5187271	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84537	0.85684	0.02978	0.02883	0.74519	0.75103	0.49815	0.51029	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53443	53443	SRR9875027	SRX6627762	SRS5187271	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35231 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35231\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 4	NA II HT female ZW 4	NA II HT female ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_4_S20_L003_R1_001.fastq.gz NA_II_HT_F_ZW_4_S20_L003_R2_001.fastq.gz	fastq fastq	2504902760.0	8294380.0	NA II HT F ZW 4 S20 L003 R1 001.fastq.gz	0:151 1:151	A:644063437;C:585139726;G:612494174;T:662732706;N:472717	151	151	644063437	585139726	612494174	662732706	472717	SRX6627762	SRS5187271	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84081	0.85447	0.02676	0.02539	0.75221	0.75735	0.50871	0.52577	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53444	53444	SRR9875028	SRX6627761	SRS5187272	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 1	NA II HT female ZW 1	NA II HT female ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_1_S17_L003_R2_001.fastq.gz NA_II_HT_F_ZW_1_S17_L003_R1_001.fastq.gz	fastq fastq	1736596036.0	5750318.0	NA II HT F ZW 1 S17 L003 R1 001.fastq.gz	0:151 1:151	A:445448229;C:406499984;G:426338448;T:458000590;N:308785	151	151	445448229	406499984	426338448	458000590	308785	SRX6627761	SRS5187272	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83645	0.84885	0.02338	0.02377	0.76181	0.77179	0.50147	0.51518	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53445	53445	SRR9875029	SRX6627760	SRS5187271	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35231 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35231\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 2	NA II HT female ZW 2	NA II HT female ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_2_S18_L003_R1_001.fastq.gz NA_II_HT_F_ZW_2_S18_L003_R2_001.fastq.gz	fastq fastq	2236262284.0	7404842.0	NA II HT F ZW 2 S18 L003 R1 001.fastq.gz	0:151 1:151	A:579456096;C:517791260;G:542824435;T:595784792;N:405701	151	151	579456096	517791260	542824435	595784792	405701	SRX6627760	SRS5187271	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84842	0.86331	0.03018	0.02879	0.74533	0.75284	0.50735	0.5179	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53446	53446	SRR9875030	SRX6627759	SRS5187270	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35233 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35233\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 7	NA II HT female ZW 7	NA II HT female ZW 7	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_7_S23_L003_R1_001.fastq.gz NA_II_HT_F_ZW_7_S23_L003_R2_001.fastq.gz	fastq fastq	4374023644.0	14483522.0	NA II HT F ZW 7 S23 L003 R1 001.fastq.gz	0:151 1:151	A:1124428490;C:1022998262;G:1067040224;T:1158743925;N:812743	151	151	1124428490	1022998262	1067040224	1158743925	812743	SRX6627759	SRS5187270	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84531	0.85451	0.02933	0.02831	0.74781	0.75268	0.50283	0.51946	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53447	53447	SRR9875031	SRX6627758	SRS5187270	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35233 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35233\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 8	NA II HT female ZW 8	NA II HT female ZW 8	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_8_S24_L003_R1_001.fastq.gz NA_II_HT_F_ZW_8_S24_L003_R2_001.fastq.gz	fastq fastq	2254992022.0	7466861.0	NA II HT F ZW 8 S24 L003 R1 001.fastq.gz	0:151 1:151	A:572485761;C:532768891;G:559608333;T:589709152;N:419885	151	151	572485761	532768891	559608333	589709152	419885	SRX6627758	SRS5187270	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83569	0.84924	0.03057	0.02989	0.75566	0.76039	0.49404	0.50869	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53448	53448	SRR9875032	SRX6627757	SRS5187270	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35233 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35233\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 5	NA II HT female ZW 5	NA II HT female ZW 5	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_5_S21_L003_R2_001.fastq.gz NA_II_HT_F_ZW_5_S21_L003_R1_001.fastq.gz	fastq fastq	2724335054.0	9020977.0	NA II HT F ZW 5 S21 L003 R1 001.fastq.gz	0:151 1:151	A:703079271;C:633677990;G:664164772;T:722907914;N:505107	151	151	703079271	633677990	664164772	722907914	505107	SRX6627757	SRS5187270	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83901	0.84962	0.0312	0.03084	0.74105	0.74653	0.50721	0.52334	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53449	53449	SRR9875033	SRX6627756	SRS5187270	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35233 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35233\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT female ZW 6	NA II HT female ZW 6	NA II HT female ZW 6	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_F_ZW_6_S22_L003_R1_001.fastq.gz NA_II_HT_F_ZW_6_S22_L003_R2_001.fastq.gz	fastq fastq	2606443616.0	8630608.0	NA II HT F ZW 6 S22 L003 R1 001.fastq.gz	0:151 1:151	A:673760471;C:606196676;G:634265991;T:691738470;N:482008	151	151	673760471	606196676	634265991	691738470	482008	SRX6627756	SRS5187270	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84587	0.85525	0.03449	0.03295	0.74172	0.74748	0.51773	0.53608	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53450	53450	SRR9875034	SRX6627755	SRS5187269	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT neomale ZW 1	NA II LT neomale ZW 1	NA II LT neomale ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZW_1_S33_L003_R1_001.fastq.gz NA_II_LT_M_ZW_1_S33_L003_R2_001.fastq.gz	fastq fastq	1357711366.0	4495733.0	NA II LT M ZW 1 S33 L003 R1 001.fastq.gz	0:151 1:151	A:358839496;C:303639822;G:318677702;T:376311671;N:242675	151	151	358839496	303639822	318677702	376311671	242675	SRX6627755	SRS5187269	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82749	0.84168	0.10104	0.09776	0.66665	0.67706	0.50176	0.52822	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53451	53451	SRR9875035	SRX6627754	SRS5187269	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT neomale ZW 2	NA II LT neomale ZW 2	NA II LT neomale ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZW_2_S34_L003_R1_001.fastq.gz NA_II_LT_M_ZW_2_S34_L003_R2_001.fastq.gz	fastq fastq	1079038148.0	3572974.0	NA II LT M ZW 2 S34 L003 R1 001.fastq.gz	0:151 1:151	A:284225595;C:242609321;G:252807823;T:299195973;N:199436	151	151	284225595	242609321	252807823	299195973	199436	SRX6627754	SRS5187269	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8249	0.83852	0.12503	0.1145	0.66787	0.67907	0.49177	0.54123	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53452	53452	SRR9875036	SRX6627753	SRS5187269	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT neomale ZW 3	NA II LT neomale ZW 3	NA II LT neomale ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZW_3_S35_L003_R2_001.fastq.gz NA_II_LT_M_ZW_3_S35_L003_R1_001.fastq.gz	fastq fastq	2282644350.0	7558425.0	NA II LT M ZW 3 S35 L003 R1 001.fastq.gz	0:151 1:151	A:607545184;C:507924138;G:532513071;T:634242294;N:419663	151	151	607545184	507924138	532513071	634242294	419663	SRX6627753	SRS5187269	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.81283	0.8258	0.11617	0.1097	0.65689	0.66569	0.49773	0.52947	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53453	53453	SRR9875037	SRX6627752	SRS5187269	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT neomale ZW 4	NA II LT neomale ZW 4	NA II LT neomale ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZW_4_S36_L003_R1_001.fastq.gz NA_II_LT_M_ZW_4_S36_L003_R2_001.fastq.gz	fastq fastq	2086507430.0	6908965.0	NA II LT M ZW 4 S36 L003 R1 001.fastq.gz	0:151 1:151	A:538604539;C:480340952;G:499613332;T:567569684;N:378923	151	151	538604539	480340952	499613332	567569684	378923	SRX6627752	SRS5187269	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83381	0.84464	0.12553	0.11185	0.66346	0.6743	0.48592	0.54627	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53454	53454	SRR9875038	SRX6627751	SRS5187268	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT male ZZ 1	NA II LT male ZZ 1	NA II LT male ZZ 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZZ_1_S37_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_1_S37_L003_R2_001.fastq.gz	fastq fastq	3125472896.0	10349248.0	NA II LT M ZZ 1 S37 L003 R1 001.fastq.gz	0:151 1:151	A:826449700;C:708899305;G:733394083;T:856152498;N:577310	151	151	826449700	708899305	733394083	856152498	577310	SRX6627751	SRS5187268	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82658	0.83272	0.12623	0.1163	0.65756	0.66722	0.48097	0.53128	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53455	53455	SRR9875039	SRX6627750	SRS5187268	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT male ZZ 2	NA II LT male ZZ 2	NA II LT male ZZ 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZZ_2_S38_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_2_S38_L003_R2_001.fastq.gz	fastq fastq	2054902526.0	6804313.0	NA II LT M ZZ 2 S38 L003 R1 001.fastq.gz	0:151 1:151	A:531226544;C:477661282;G:496881812;T:548754535;N:378353	151	151	531226544	477661282	496881812	548754535	378353	SRX6627750	SRS5187268	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82889	0.83299	0.12553	0.112	0.67231	0.67963	0.48585	0.55425	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53456	53456	SRR9875040	SRX6627749	SRS5187268	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT male ZZ 3	NA II LT male ZZ 3	NA II LT male ZZ 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZZ_3_S39_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_3_S39_L003_R2_001.fastq.gz	fastq fastq	2114157946.0	7000523.0	NA II LT M ZZ 3 S39 L003 R1 001.fastq.gz	0:151 1:151	A:550987311;C:480876975;G:502310453;T:579594583;N:388624	151	151	550987311	480876975	502310453	579594583	388624	SRX6627749	SRS5187268	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.81833	0.8296	0.11739	0.10808	0.67182	0.67844	0.48149	0.5418	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53457	53457	SRR9875041	SRX6627748	SRS5187268	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT male ZZ 4	NA II LT male ZZ 4	NA II LT male ZZ 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_M_ZZ_4_S40_L003_R1_001.fastq.gz NA_II_LT_M_ZZ_4_S40_L003_R2_001.fastq.gz	fastq fastq	1495067308.0	4950554.0	NA II LT M ZZ 4 S40 L003 R1 001.fastq.gz	0:151 1:151	A:390009825;C:338696774;G:352130264;T:413947694;N:282751	151	151	390009825	338696774	352130264	413947694	282751	SRX6627748	SRS5187268	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8249	0.84026	0.10326	0.09647	0.6729	0.68176	0.49745	0.53215	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53458	53458	SRR9875042	SRX6627747	SRS5187267	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT female ZW 2	NA I LT female ZW 2	NA I LT female ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_F_ZW_2_S10_L003_R1_001.fastq.gz NA_I_LT_F_ZW_2_S10_L003_R2_001.fastq.gz	fastq fastq	3034833334.0	10049117.0	NA I LT F ZW 2 S10 L003 R1 001.fastq.gz	0:151 1:151	A:774988052;C:708380465;G:741374235;T:809523019;N:567563	151	151	774988052	708380465	741374235	809523019	567563	SRX6627747	SRS5187267	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8428	0.85733	0.02408	0.02325	0.7502	0.75444	0.50904	0.52136	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53459	53459	SRR9875043	SRX6627746	SRS5187267	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S32366 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I LT female ZW 1	NA I LT female ZW 1	NA I LT female ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_LT_F_ZW_1_S9_L003_R1_001.fastq.gz NA_I_LT_F_ZW_1_S9_L003_R2_001.fastq.gz	fastq fastq	2125350972.0	7037586.0	NA I LT F ZW 1 S9 L003 R1 001.fastq.gz	0:151 1:151	A:545614513;C:497333512;G:519240116;T:562771287;N:391544	151	151	545614513	497333512	519240116	562771287	391544	SRX6627746	SRS5187267	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82461	0.83743	0.02141	0.02062	0.75394	0.7595	0.48916	0.51164	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53460	53460	SRR9875044	SRX6627745	SRS5187266	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT neomale ZW 2	NA I HT neomale ZW 2	NA I HT neomale ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZW_2_S46_L003_R1_001.fastq.gz NA_I_HT_M_ZW_2_S46_L003_R2_001.fastq.gz	fastq fastq	1806321494.0	5981197.0	NA I HT M ZW 2 S46 L003 R1 001.fastq.gz	0:151 1:151	A:475635210;C:409795334;G:421841520;T:498713602;N:335828	151	151	475635210	409795334	421841520	498713602	335828	SRX6627745	SRS5187266	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84633	0.85265	0.11305	0.10352	0.66949	0.67988	0.51289	0.54556	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53461	53461	SRR9875045	SRX6627744	SRS5187266	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT neomale ZW 1	NA I HT neomale ZW 1	NA I HT neomale ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZW_1_S45_L003_R1_001.fastq.gz NA_I_HT_M_ZW_1_S45_L003_R2_001.fastq.gz	fastq fastq	1785467186.0	5912143.0	NA I HT M ZW 1 S45 L003 R1 001.fastq.gz	0:151 1:151	A:458130008;C:419048292;G:433123403;T:474834704;N:330779	151	151	458130008	419048292	433123403	474834704	330779	SRX6627744	SRS5187266	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82063	0.82213	0.10291	0.09434	0.67292	0.68302	0.49008	0.54662	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53462	53462	SRR9875046	SRX6627743	SRS5187266	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT neomale ZW 4	NA I HT neomale ZW 4	NA I HT neomale ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZW_4_S48_L003_R2_001.fastq.gz NA_I_HT_M_ZW_4_S48_L003_R1_001.fastq.gz	fastq fastq	1721739146.0	5701123.0	NA I HT M ZW 4 S48 L003 R1 001.fastq.gz	0:151 1:151	A:457579053;C:387246239;G:402046929;T:474553811;N:313114	151	151	457579053	387246239	402046929	474553811	313114	SRX6627743	SRS5187266	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83132	0.84076	0.10303	0.09716	0.67278	0.67971	0.51397	0.54201	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53463	53463	SRR9875047	SRX6627742	SRS5187266	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT neomale ZW 3	NA I HT neomale ZW 3	NA I HT neomale ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZW_3_S47_L003_R1_001.fastq.gz NA_I_HT_M_ZW_3_S47_L003_R2_001.fastq.gz	fastq fastq	1864038224.0	6172312.0	NA I HT M ZW 3 S47 L003 R1 001.fastq.gz	0:151 1:151	A:488182037;C:418744893;G:435328272;T:521434960;N:348062	151	151	488182037	418744893	435328272	521434960	348062	SRX6627742	SRS5187266	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82491	0.84075	0.10296	0.09613	0.67032	0.67939	0.4924	0.5357	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53464	53464	SRR9875048	SRX6627741	SRS5187265	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT male ZZ 2	NA I HT male ZZ 2	NA I HT male ZZ 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZZ_2_S42_L003_R2_001.fastq.gz NA_I_HT_M_ZZ_2_S42_L003_R1_001.fastq.gz	fastq fastq	2056499200.0	6809600.0	NA I HT M ZZ 2 S42 L003 R1 001.fastq.gz	0:151 1:151	A:538336279;C:472717996;G:488512293;T:556554652;N:377980	151	151	538336279	472717996	488512293	556554652	377980	SRX6627741	SRS5187265	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83126	0.84204	0.107	0.10077	0.67073	0.67831	0.49524	0.53134	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53465	53465	SRR9875049	SRX6627740	SRS5187265	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT male ZZ 1	NA I HT male ZZ 1	NA I HT male ZZ 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZZ_1_S41_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_1_S41_L003_R2_001.fastq.gz	fastq fastq	1365412366.0	4521233.0	NA I HT M ZZ 1 S41 L003 R1 001.fastq.gz	0:151 1:151	A:355480646;C:309546887;G:320575933;T:379562206;N:246694	151	151	355480646	309546887	320575933	379562206	246694	SRX6627740	SRS5187265	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83473	0.84725	0.10882	0.10201	0.66421	0.6762	0.50362	0.53357	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53466	53466	SRR9875050	SRX6627739	SRS5187265	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT male ZZ 4	NA I HT male ZZ 4	NA I HT male ZZ 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZZ_4_S44_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_4_S44_L003_R2_001.fastq.gz	fastq fastq	2913929748.0	9648774.0	NA I HT M ZZ 4 S44 L003 R1 001.fastq.gz	0:151 1:151	A:754611935;C:673613964;G:694334777;T:790819457;N:549615	151	151	754611935	673613964	694334777	790819457	549615	SRX6627739	SRS5187265	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84367	0.849	0.09149	0.08242	0.67207	0.68022	0.49473	0.54294	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53467	53467	SRR9875051	SRX6627738	SRS5187265	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S32366 36C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:36°C\|Stock:S32366\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA I HT male ZZ 3	NA I HT male ZZ 3	NA I HT male ZZ 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_I_HT_M_ZZ_3_S43_L003_R1_001.fastq.gz NA_I_HT_M_ZZ_3_S43_L003_R2_001.fastq.gz	fastq fastq	1847515804.0	6117602.0	NA I HT M ZZ 3 S43 L003 R1 001.fastq.gz	0:151 1:151	A:482681863;C:418051930;G:432751376;T:513690111;N:340524	151	151	482681863	418051930	432751376	513690111	340524	SRX6627738	SRS5187265	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83211	0.842	0.10026	0.09236	0.67211	0.68093	0.49535	0.53213	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53468	53468	SRR9875052	SRX6627737	SRS5187262	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT female ZW 4	NA II LT female ZW 4	NA II LT female ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_F_ZW_4_S16_L003_R1_001.fastq.gz NA_II_LT_F_ZW_4_S16_L003_R2_001.fastq.gz	fastq fastq	3220410824.0	10663612.0	NA II LT F ZW 4 S16 L003 R1 001.fastq.gz	0:151 1:151	A:821518938;C:761183396;G:793393852;T:843716812;N:597826	151	151	821518938	761183396	793393852	843716812	597826	SRX6627737	SRS5187262	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8413	0.85256	0.02501	0.0238	0.74966	0.75556	0.50159	0.52008	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53469	53469	SRR9875053	SRX6627736	SRS5187262	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT female ZW 3	NA II LT female ZW 3	NA II LT female ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_F_ZW_3_S15_L003_R1_001.fastq.gz NA_II_LT_F_ZW_3_S15_L003_R2_001.fastq.gz	fastq fastq	2845167066.0	9421083.0	NA II LT F ZW 3 S15 L003 R1 001.fastq.gz	0:151 1:151	A:728473162;C:665785810;G:698014630;T:752369136;N:524328	151	151	728473162	665785810	698014630	752369136	524328	SRX6627736	SRS5187262	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84878	0.86228	0.02745	0.02607	0.75191	0.75769	0.50354	0.52065	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53470	53470	SRR9875054	SRX6627735	SRS5187264	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT neomale ZW 4	NA II HT neomale ZW 4	NA II HT neomale ZW 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZW_4_S52_L003_R1_001.fastq.gz NA_II_HT_M_ZW_4_S52_L003_R2_001.fastq.gz	fastq fastq	1748851196.0	5790898.0	NA II HT M ZW 4 S52 L003 R1 001.fastq.gz	0:151 1:151	A:453103739;C:399124717;G:415809420;T:480488752;N:324568	151	151	453103739	399124717	415809420	480488752	324568	SRX6627735	SRS5187264	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82727	0.84009	0.12956	0.11808	0.67209	0.68241	0.48691	0.54595	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53471	53471	SRR9875055	SRX6627734	SRS5187264	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA neomale S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT neomale ZW 3	NA II HT neomale ZW 3	NA II HT neomale ZW 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZW_3_S51_L003_R1_001.fastq.gz NA_II_HT_M_ZW_3_S51_L003_R2_001.fastq.gz	fastq fastq	1423809804.0	4714602.0	NA II HT M ZW 3 S51 L003 R1 001.fastq.gz	0:151 1:151	A:369849507;C:327636581;G:340380495;T:385675721;N:267500	151	151	369849507	327636581	340380495	385675721	267500	SRX6627734	SRS5187264	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.83684	0.84439	0.1337	0.11897	0.67071	0.67923	0.47897	0.5467	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53472	53472	SRR9875056	SRX6627733	SRS5187263	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT male ZZ 2	NA II HT male ZZ 2	NA II HT male ZZ 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZZ_2_S54_L003_R2_001.fastq.gz NA_II_HT_M_ZZ_2_S54_L003_R1_001.fastq.gz	fastq fastq	1357808308.0	4496054.0	NA II HT M ZZ 2 S54 L003 R1 001.fastq.gz	0:151 1:151	A:368185082;C:300053394;G:309250883;T:380079888;N:239061	151	151	368185082	300053394	309250883	380079888	239061	SRX6627733	SRS5187263	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82938	0.83196	0.15304	0.14574	0.65527	0.68789	0.49161	0.5465	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53473	53473	SRR9875057	SRX6627732	SRS5187263	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT male ZZ 1	NA II HT male ZZ 1	NA II HT male ZZ 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZZ_1_S53_L003_R1_001.fastq.gz NA_II_HT_M_ZZ_1_S53_L003_R2_001.fastq.gz	fastq fastq	1634133174.0	5411037.0	NA II HT M ZZ 1 S53 L003 R1 001.fastq.gz	0:151 1:151	A:436483988;C:366023166;G:381257189;T:450055228;N:313603	151	151	436483988	366023166	381257189	450055228	313603	SRX6627732	SRS5187263	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.79603	0.79505	0.11794	0.10877	0.66318	0.66994	0.44714	0.53953	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53474	53474	SRR9875058	SRX6627731	SRS5187263	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT male ZZ 4	NA II HT male ZZ 4	NA II HT male ZZ 4	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZZ_4_S56_L003_R2_001.fastq.gz NA_II_HT_M_ZZ_4_S56_L003_R1_001.fastq.gz	fastq fastq	1883910730.0	6238115.0	NA II HT M ZZ 4 S56 L003 R1 001.fastq.gz	0:151 1:151	A:495423095;C:424615591;G:443714130;T:519807712;N:350202	151	151	495423095	424615591	443714130	519807712	350202	SRX6627731	SRS5187263	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8286	0.83747	0.11822	0.11035	0.67385	0.68237	0.49035	0.52038	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53475	53475	SRR9875059	SRX6627730	SRS5187263	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA male S35232 34C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:male\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZZ\|treatment:34°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II HT male ZZ 3	NA II HT male ZZ 3	NA II HT male ZZ 3	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_HT_M_ZZ_3_S55_L003_R1_001.fastq.gz NA_II_HT_M_ZZ_3_S55_L003_R2_001.fastq.gz	fastq fastq	2340416648.0	7749724.0	NA II HT M ZZ 3 S55 L003 R1 001.fastq.gz	0:151 1:151	A:613484653;C:531562814;G:551930055;T:643006924;N:432202	151	151	613484653	531562814	551930055	643006924	432202	SRX6627730	SRS5187263	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.82905	0.83646	0.12739	0.11633	0.66687	0.67675	0.47544	0.52774	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53476	53476	SRR9875060	SRX6627729	SRS5187262	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT female ZW 2	NA II LT female ZW 2	NA II LT female ZW 2	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_F_ZW_2_S14_L003_R1_001.fastq.gz NA_II_LT_F_ZW_2_S14_L003_R2_001.fastq.gz	fastq fastq	3634056298.0	12033299.0	NA II LT F ZW 2 S14 L003 R1 001.fastq.gz	0:151 1:151	A:931115370;C:854959901;G:890343355;T:956948734;N:688938	151	151	931115370	854959901	890343355	956948734	688938	SRX6627729	SRS5187262	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.8473	0.85879	0.03289	0.03091	0.74442	0.74953	0.50941	0.52493	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
53477	53477	SRR9875061	SRX6627728	SRS5187262	SRP216974	PRJNA557435	RNA seq of Danio rerio gonads exposed to elevated temperature during development	PRJNA557435	Transcriptome Analysis	Zebrafish of the Nadia strain were raised at 28.5°C 34°C or 36°C from 18 dpf 30 dpf dpf to understand the developmental effects of high temperature on zebrafish that possess a genetic sex determinant. Fish were evaluated for genotypic and phenotypic sex and RNA seq was performed on gonads collected at 90dpf. Strand specific sequencing libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq kit and sequenced on an Illumina HiSeq 4000.			NA female S35232 28C	strain:Nadia\|age:90 dpf\|dev stage:adult\|sex:female\|tissue:gonad\|biomaterial provider:John H. Postlethwait University of Oregon\|genotype:ZW\|treatment:28°C\|Stock:S35232\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: NA II LT female ZW 1	NA II LT female ZW 1	NA II LT female ZW 1	Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 4000	SRP216974		NA_II_LT_F_ZW_1_S13_L003_R1_001.fastq.gz NA_II_LT_F_ZW_1_S13_L003_R2_001.fastq.gz	fastq fastq	2455418852.0	8130526.0	NA II LT F ZW 1 S13 L003 R1 001.fastq.gz	0:151 1:151	A:623606538;C:582997106;G:608663760;T:639692291;N:459157	151	151	623606538	582997106	608663760	639692291	459157	SRX6627728	SRS5187262	SRA929643	University of Oregon\|Institute of Neuroscience	University of Oregon	2	0.84721	0.8574	0.02968	0.02825	0.75022	0.75574	0.51102	0.52174	151	151	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-07-31	Adult	Adult	Gonad	Reproductive System
70107	70107	SRR19561927	SRX15614023	SRS13314708	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr27 2	Dr27 2	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:27 replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 7 27 2 ovary	7 27 2 ovary	7 27 2 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6007 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		7-27-2-ovary-RNA_R1.fq.gz 7-27-2-ovary-RNA_R2.fq.gz	fastq fastq	6966496500.0	23221655.0	7 27 2 ovary RNA R1.fq.gz	0:150 1:150	A:1784852772;C:1676888545;G:1685222280;T:1819390747;N:142156	150	150	1784852772	1676888545	1685222280	1819390747	142156	SRX15614023	SRS13314708	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93216	0.93055	0.01749	0.01668	0.75471	0.75726	0.4877	0.48889	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70114	70114	SRR19561934	SRX15614016	SRS13314715	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr13 3	Dr13 3	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:13 replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 42 13 3 ovary	42 13 3 ovary	42 13 3 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6049 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		42-13-3-ovary-RNA_R1.fq.gz 42-13-3-ovary-RNA_R2.fq.gz	fastq fastq	8315953800.0	27719846.0	42 13 3 ovary RNA R1.fq.gz	0:150 1:150	A:2113845666;C:2013021948;G:2030561324;T:2158373576;N:151286	150	150	2113845666	2013021948	2030561324	2158373576	151286	SRX15614016	SRS13314715	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.9325	0.93211	0.01498	0.01482	0.75627	0.76163	0.4678	0.46603	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70120	70120	SRR19561940	SRX15614010	SRS13314714	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr13 2	Dr13 2	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:13 replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 37 13 2 ovary	37 13 2 ovary	37 13 2 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6043 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		37-13-2-ovary-RNA_R1.fq.gz 37-13-2-ovary-RNA_R2.fq.gz	fastq fastq	10671303300.0	35571011.0	37 13 2 ovary RNA R1.fq.gz	0:150 1:150	A:2704549797;C:2589885874;G:2606829122;T:2769845305;N:193202	150	150	2704549797	2589885874	2606829122	2769845305	193202	SRX15614010	SRS13314714	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.9364	0.934	0.01462	0.01457	0.75609	0.76128	0.4657	0.47185	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70127	70127	SRR19561947	SRX15614003	SRS13314713	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr13 1	Dr13 1	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:13 replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 32 13 1 ovary	32 13 1 ovary	32 13 1 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6037 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		32-13-1-ovary-RNA_R1.fq.gz 32-13-1-ovary-RNA_R2.fq.gz	fastq fastq	7793077200.0	25976924.0	32 13 1 ovary RNA R1.fq.gz	0:150 1:150	A:1968202669;C:1898498061;G:1904799202;T:2021425841;N:151427	150	150	1968202669	1898498061	1904799202	2021425841	151427	SRX15614003	SRS13314713	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93599	0.9342	0.01657	0.01693	0.75189	0.75599	0.47812	0.47528	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70133	70133	SRR19561953	SRX15613997	SRS13314712	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr18 3	Dr18 3	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:18 replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 27 18 3 ovary	27 18 3 ovary	27 18 3 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6031 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		27-18-3-ovary-RNA_R1.fq.gz 27-18-3-ovary-RNA_R2.fq.gz	fastq fastq	7124234400.0	23747448.0	27 18 3 ovary RNA R1.fq.gz	0:150 1:150	A:1796883339;C:1737042072;G:1753365220;T:1836804245;N:139524	150	150	1796883339	1737042072	1753365220	1836804245	139524	SRX15613997	SRS13314712	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93502	0.93824	0.01518	0.01539	0.75047	0.75383	0.47032	0.46666	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70140	70140	SRR19561960	SRX15613990	SRS13314711	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr18 2	Dr18 2	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:18 replicate 2\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 22 18 2 ovary	22 18 2 ovary	22 18 2 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6025 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		22-18-2-ovary-RNA_R1.fq.gz 22-18-2-ovary-RNA_R2.fq.gz	fastq fastq	7099932300.0	23666441.0	22 18 2 ovary RNA R1.fq.gz	0:150 1:150	A:1797931340;C:1723404082;G:1743428459;T:1835029062;N:139357	150	150	1797931340	1723404082	1743428459	1835029062	139357	SRX15613990	SRS13314711	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93288	0.93529	0.01597	0.01626	0.7539	0.75808	0.46947	0.47752	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70147	70147	SRR19561967	SRX15613983	SRS13314710	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr18 1	Dr18 1	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:18 replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 17 18 1 ovary	17 18 1 ovary	17 18 1 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6019 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		17-18-1-ovary-RNA_R1.fq.gz 17-18-1-ovary-RNA_R2.fq.gz	fastq fastq	8008588200.0	26695294.0	17 18 1 ovary RNA R1.fq.gz	0:150 1:150	A:2021818549;C:1946471492;G:1957729236;T:2082410352;N:158571	150	150	2021818549	1946471492	1957729236	2082410352	158571	SRX15613983	SRS13314710	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93122	0.92495	0.01366	0.01312	0.75609	0.76128	0.47394	0.4716	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70153	70153	SRR19561973	SRX15613977	SRS13314709	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr27 3	Dr27 3	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:27 replicate 3\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 12 27 3 ovary	12 27 3 ovary	12 27 3 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6013 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		12-27-3-ovary-RNA_R1.fq.gz 12-27-3-ovary-RNA_R2.fq.gz	fastq fastq	7533353100.0	25111177.0	12 27 3 ovary RNA R1.fq.gz	0:150 1:150	A:1907565137;C:1829000535;G:1846316394;T:1950319115;N:151919	150	150	1907565137	1829000535	1846316394	1950319115	151919	SRX15613977	SRS13314709	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93863	0.93775	0.01361	0.01336	0.75501	0.75854	0.4667	0.47208	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
70157	70157	SRR19561977	SRX15613973	SRS13314707	SRP378802	PRJNA846110	Danio rerio Raw sequence reads	PRJNA846110	Other	Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio		Dr27 1	Dr27 1	strain:not applicable\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:adult\|sex:female\|tissue:multi tissue\|aliquot:27 replicate 1\|BioSampleModel:Model organism or animal	RNA Seq of Danio rerio: adult female 2 27 1 ovary	2 27 1 ovary	2 27 1 ovary	All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6001 illumina platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP378802		2-27-1-ovary-RNA_R1.fq.gz 2-27-1-ovary-RNA_R2.fq.gz	fastq fastq	7210844100.0	24036147.0	2 27 1 ovary RNA R1.fq.gz	0:150 1:150	A:1833886811;C:1743095370;G:1761088965;T:1872626910;N:146044	150	150	1833886811	1743095370	1761088965	1872626910	146044	SRX15613973	SRS13314707	SRA1432943	shanghai ocean university\|College of Fisheries and Life Science	shanghai ocean university	2	0.93275	0.93077	0.01644	0.01637	0.75284	0.75619	0.47261	0.47523	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2022-06-07	Adult	Adult	Gonad	Reproductive System
77261	77261	SRR25434203	SRX21168298	SRS18429832	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			dmrt / 2	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 6\|BioSampleModel:Model organism or animal	RNA seq of gonad	dmrt2	dmrt2	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		dmrt2_R1_.fastq.gz dmrt2_R2.fastq.gz	fastq fastq	5751045000.0	19170150.0	dmrt2 R1 .fastq.gz	0:150 1:150	A:1488645455;C:1371887358;G:1405356847;T:1485112991;N:42349	150	150	1488645455	1371887358	1405356847	1485112991	42349	SRX21168298	SRS18429832	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.91589	0.91745	0.01703	0.01705	0.7637	0.76402	0.47113	0.46945	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System
77262	77262	SRR25434204	SRX21168297	SRS18429831	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			dmrt / 1	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 5\|BioSampleModel:Model organism or animal	RNA seq of gonad	dmrt1	dmrt1	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		dmrt1_R2.fastq.gz dmrt1_R1.fastq.gz	fastq fastq	7183531200.0	23945104.0	dmrt1 R1.fastq.gz	0:150 1:150	A:1847909835;C:1724710101;G:1769658622;T:1841199904;N:52738	150	150	1847909835	1724710101	1769658622	1841199904	52738	SRX21168297	SRS18429831	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.92259	0.92339	0.01692	0.01663	0.76558	0.76589	0.46917	0.46678	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System
77263	77263	SRR25434205	SRX21168296	SRS18429830	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			cyp17a1 / ;dmrt1 / 2	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 4\|BioSampleModel:Model organism or animal	RNA seq of gonad	dko2	dko2	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		dko2_R2.fastq.gz dko2_R1.fastq.gz	fastq fastq	6765257700.0	22550859.0	dko2 R1.fastq.gz	0:150 1:150	A:1746873541;C:1617601783;G:1668365344;T:1732367309;N:49723	150	150	1746873541	1617601783	1668365344	1732367309	49723	SRX21168296	SRS18429830	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.90858	0.90858	0.02015	0.01977	0.7612	0.76213	0.46791	0.47242	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System
77264	77264	SRR25434206	SRX21168295	SRS18429829	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			cyp17a1 / ;dmrt1 / 1	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 3\|BioSampleModel:Model organism or animal	RNA seq of gonad	dko1	dko1	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		dko1_R1.fastq.gz dko1_R2.fastq.gz	fastq fastq	6638354100.0	22127847.0	dko1 R1.fastq.gz	0:150 1:150	A:1713258874;C:1593272953;G:1635070441;T:1696702837;N:48995	150	150	1713258874	1593272953	1635070441	1696702837	48995	SRX21168295	SRS18429829	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.9182	0.91984	0.022	0.02186	0.76118	0.76167	0.47656	0.48847	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System
77265	77265	SRR25434207	SRX21168294	SRS18429828	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			Control2	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 2\|BioSampleModel:Model organism or animal	RNA seq of gonad	conf2	conf2	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		conf2_R1.fastq.gz conf2_R2.fastq.gz	fastq fastq	6223727700.0	20745759.0	conf2 R1.fastq.gz	0:150 1:150	A:1590221936;C:1500196214;G:1554765877;T:1578496570;N:47103	150	150	1590221936	1500196214	1554765877	1578496570	47103	SRX21168294	SRS18429828	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.92354	0.92626	0.01495	0.01561	0.76398	0.76418	0.47103	0.46492	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System
77266	77266	SRR25434208	SRX21168293	SRS18429827	SRP451673	PRJNA999043	The transcription analysis of gonad in zebrafish	PRJNA999043	Other	To screen out the female biased genes			Control1	isolate:not applicable\|age:80days\|dev stage:Adult\|collection date:2021\|geo loc name:China:Wuhan\|sex:female\|tissue:Gonad\|replicate:replicate = biological replicate 1\|BioSampleModel:Model organism or animal	RNA seq of gonad	conf1	conf1	screen out the key genes	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP451673		conf1_R1.fastq.gz conf1_R2.fastq.gz	fastq fastq	6799767600.0	22665892.0	conf1 R1.fastq.gz	0:150 1:150	A:1740276620;C:1642790185;G:1671812697;T:1744859854;N:28244	150	150	1740276620	1642790185	1671812697	1744859854	28244	SRX21168293	SRS18429827	SRA1681175	Chinese Academy of Sciences\|Institute of Hydrology	Chinese Academy of Sciences	2	0.93305	0.93328	0.01522	0.01517	0.76477	0.76627	0.47519	0.47422	150	150	B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2023-07-27	Multi-stage	Multi-stage	Gonad	Reproductive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;