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run_metadata

18 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PolyA" and tissue_curation = "Skin"

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tissue_curation_coarse 1

tissue_curation 1

  • Skin · 18 ✖

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PolyA · 18 ✖

experiment.library_layout 1

  • PAIRED · 18 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33837 33837 SRR30763634 SRX26165999 SRS22710780 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin con2 Skin con 3   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 3|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin con 3 SK CON 3 SK CON 3 Zebrafish skin at control group     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_con2_Clean_Data1.fq.gz Skin_con2_Clean_Data2.fq.gz fastq fastq 6083362246.0 21717347.0 Skin con2 Clean Data1.fq.gz 0:140.06 1:140.05 A:1575684711;C:1458969719;G:1469933956;T:1578641539;N:132321 140 140     1575684711 1458969719 1469933956 1578641539 132321 SRX26165999 SRS22710780 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33838 33838 SRR30763635 SRX26165998 SRS22710779 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin con1 Skin con 2   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 2|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin con 2 SK CON 2 SK CON 2 Zebrafish skin at control group     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_con1_Clean_Data1.fq.gz Skin_con1_Clean_Data2.fq.gz fastq fastq 5776524166.0 20610041.0 Skin con1 Clean Data1.fq.gz 0:140.14 1:140.13 A:1496887200;C:1385008310;G:1395131090;T:1499373290;N:124276 140 140     1496887200 1385008310 1395131090 1499373290 124276 SRX26165998 SRS22710779 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33839 33839 SRR30763636 SRX26165997 SRS22710778 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin con Skin con 1   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin con 1|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin con 1 SK CON 1 SK CON 1 Zebrafish skin at control group     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_con_Clean_Data1.fq.gz Skin_con_Clean_Data2.fq.gz fastq fastq 5304184337.0 18925504.0 Skin con Clean Data1.fq.gz 0:140.14 1:140.13 A:1400015654;C:1245459230;G:1267684230;T:1391013551;N:11672 140 140     1400015654 1245459230 1267684230 1391013551 11672 SRX26165997 SRS22710778 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33840 33840 SRR30763637 SRX26165996 SRS22710777 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 3dpi2 Skin 3d 3   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 3|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 3d 3 SK 3D 3 SK 3D 3 Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_3dpi2_Clean_Data1.fq.gz Skin_3dpi2_Clean_Data2.fq.gz fastq fastq 5528962547.0 19717071.0 Skin 3dpi2 Clean Data1.fq.gz 0:140.21 1:140.20 A:1434889776;C:1319598036;G:1335801562;T:1438550030;N:123143 140 140     1434889776 1319598036 1335801562 1438550030 123143 SRX26165996 SRS22710777 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33841 33841 SRR30763638 SRX26165995 SRS22710776 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 3dpi1 Skin 3d 2   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 2|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 3d 2 SK 3D 2 SK 3D 2 Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_3dpi1_Clean_Data1.fq.gz Skin_3dpi1_Clean_Data2.fq.gz fastq fastq 6045424568.0 21559158.0 Skin 3dpi1 Clean Data1.fq.gz 0:140.21 1:140.20 A:1566211023;C:1442845401;G:1464489674;T:1571745680;N:132790 140 140     1566211023 1442845401 1464489674 1571745680 132790 SRX26165995 SRS22710776 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33842 33842 SRR30763639 SRX26165994 SRS22710775 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 3dpi Skin 3d 1   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 3dpi 1|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 3d 1 SK 3D 1 SK 3D 1 Zebrafish skin at 3 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_3dpi_Clean_Data1.fq.gz Skin_3dpi_Clean_Data2.fq.gz fastq fastq 5398897838.0 19388025.0 Skin 3dpi Clean Data1.fq.gz 0:139.24 1:139.23 A:1434301676;C:1260747084;G:1277759027;T:1426077485;N:12566 139 139     1434301676 1260747084 1277759027 1426077485 12566 SRX26165994 SRS22710775 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33843 33843 SRR30763640 SRX26165993 SRS22710774 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 1dpi2 Skin 1d 3   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 3|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 1d 3 SK 1D 3 SK 1D 3 Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_1dpi2_Clean_Data1.fq.gz Skin_1dpi2_Clean_Data2.fq.gz fastq fastq 6317753535.0 22527726.0 Skin 1dpi2 Clean Data1.fq.gz 0:140.23 1:140.22 A:1637469629;C:1508203339;G:1526532646;T:1645411954;N:135967 140 140     1637469629 1508203339 1526532646 1645411954 135967 SRX26165993 SRS22710774 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33844 33844 SRR30763641 SRX26165992 SRS22710773 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 1dpi1 Skin 1d 2   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 2|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 1d 2 SK 1D 2 SK 1D 2 Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_1dpi1_Clean_Data1.fq.gz Skin_1dpi1_Clean_Data2.fq.gz fastq fastq 5665401221.0 20209478.0 Skin 1dpi1 Clean Data1.fq.gz 0:140.17 1:140.16 A:1463485728;C:1359900876;G:1372085350;T:1469804976;N:124291 140 140     1463485728 1359900876 1372085350 1469804976 124291 SRX26165992 SRS22710773 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
33845 33845 SRR30763642 SRX26165991 SRS22710772 SRP534093 PRJNA1163532 Skin as outermost immune organ of vertebrates that elicits robust early immune responses post immunization with glycoprotein of spring viraemia of carp virus PRJNA1163532 Whole Genome Sequencing         Skin 1dpi Skin 1d 1   breed:zebrafish|age:6 month|collection date:2020 01 10|geo loc name:China: Yangling|sex:not collected|tissue:skin|treatment:Skin 1dpi 1|BioSampleModel:Model organism or animal                 Zebrafish skin RNA seq Skin 1d 1 SK 1D 1 SK 1D 1 Zebrafish skin at 1 dpv post immunization with glycoprotein of spring viraemia of carp virus     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP534093     Skin_1dpi_Clean_Data1.fq.gz Skin_1dpi_Clean_Data2.fq.gz fastq fastq 4758945020.0 17104843.0 Skin 1dpi Clean Data1.fq.gz 0:139.12 1:139.11 A:1261511064;C:1113177324;G:1128285977;T:1255959998;N:10657 139 139     1261511064 1113177324 1128285977 1255959998 10657 SRX26165991 SRS22710772 SRA1977051 Northwest A&F University|College of Animal Science and Technology Northwest A&F University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-09-22 Adult Adult Skin Surface Structure
70110 70110 SRR19561930 SRX15614020 SRS13314715 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr13 3 Dr13 3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 45 13 3 skin 45 13 3 skin 45 13 3 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6052 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     45-13-3-skin-RNA_R1.fq.gz 45-13-3-skin-RNA_R2.fq.gz fastq fastq 8803960200.0 29346534.0 45 13 3 skin RNA R1.fq.gz 0:150 1:150 A:2331850157;C:2044379248;G:2068899530;T:2358671653;N:159612 150 150     2331850157 2044379248 2068899530 2358671653 159612 SRX15614020 SRS13314715 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94093 0.93983 0.07299 0.07323 0.70956 0.7175 0.49542 0.49282 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70117 70117 SRR19561937 SRX15614013 SRS13314714 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr13 2 Dr13 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 40 13 2 skin 40 13 2 skin 40 13 2 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6046 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     40-13-2-skin-RNA_R1.fq.gz 40-13-2-skin-RNA_R2.fq.gz fastq fastq 7384104300.0 24613681.0 40 13 2 skin RNA R1.fq.gz 0:150 1:150 A:1946285906;C:1723958270;G:1744031915;T:1969696634;N:131575 150 150     1946285906 1723958270 1744031915 1969696634 131575 SRX15614013 SRS13314714 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.93711 0.93654 0.07583 0.07619 0.70329 0.71106 0.49506 0.48489 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70123 70123 SRR19561943 SRX15614007 SRS13314713 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr13 1 Dr13 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:13 replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 35 13 1 skin 35 13 1 skin 35 13 1 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6040 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     35-13-1-skin-RNA_R1.fq.gz 35-13-1-skin-RNA_R2.fq.gz fastq fastq 7048170000.0 23493900.0 35 13 1 skin RNA R1.fq.gz 0:150 1:150 A:1853436919;C:1646809377;G:1671470350;T:1876315196;N:138158 150 150     1853436919 1646809377 1671470350 1876315196 138158 SRX15614007 SRS13314713 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94089 0.9437 0.07696 0.07752 0.71269 0.71672 0.48203 0.48846 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70124 70124 SRR19561944 SRX15614006 SRS13314707 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr27 1 Dr27 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 5 27 1 skin 5 27 1 skin 5 27 1 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6004 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     5-27-1-skin-RNA_R1.fq.gz 5-27-1-skin-RNA_R2.fq.gz fastq fastq 7896213300.0 26320711.0 5 27 1 skin RNA R1.fq.gz 0:150 1:150 A:2053107057;C:1861415213;G:1895292332;T:2086241112;N:157586 150 150     2053107057 1861415213 1895292332 2086241112 157586 SRX15614006 SRS13314707 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94616 0.94573 0.06222 0.062 0.70711 0.71299 0.46446 0.4685 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70130 70130 SRR19561950 SRX15614000 SRS13314712 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr18 3 Dr18 3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 30 18 3 skin 30 18 3 skin 30 18 3 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6034 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     30-18-3-skin-RNA_R1.fq.gz 30-18-3-skin-RNA_R2.fq.gz fastq fastq 8332988400.0 27776628.0 30 18 3 skin RNA R1.fq.gz 0:150 1:150 A:2171684017;C:1969633232;G:1983804591;T:2207704640;N:161920 150 150     2171684017 1969633232 1983804591 2207704640 161920 SRX15614000 SRS13314712 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94853 0.94998 0.06705 0.06721 0.70828 0.71338 0.50912 0.51354 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70137 70137 SRR19561957 SRX15613993 SRS13314711 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr18 2 Dr18 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 25 18 2 skin 25 18 2 skin 25 18 2 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6028 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     25-18-2-skin-RNA_R1.fq.gz 25-18-2-skin-RNA_R2.fq.gz fastq fastq 7904881200.0 26349604.0 25 18 2 skin RNA R1.fq.gz 0:150 1:150 A:2072962586;C:1858401810;G:1869931908;T:2103432362;N:152534 150 150     2072962586 1858401810 1869931908 2103432362 152534 SRX15613993 SRS13314711 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94613 0.94717 0.07133 0.0724 0.71035 0.71539 0.49748 0.4888 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70143 70143 SRR19561963 SRX15613987 SRS13314710 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr18 1 Dr18 1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:18 replicate 1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 20 18 1 skin 20 18 1 skin 20 18 1 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6022 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     20-18-1-skin-RNA_R1.fq.gz 20-18-1-skin-RNA_R2.fq.gz fastq fastq 6302723700.0 21009079.0 20 18 1 skin RNA R1.fq.gz 0:150 1:150 A:1658019159;C:1467864572;G:1495349428;T:1681368226;N:122315 150 150     1658019159 1467864572 1495349428 1681368226 122315 SRX15613987 SRS13314710 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94106 0.94262 0.07248 0.07365 0.69727 0.70128 0.49998 0.49553 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70150 70150 SRR19561970 SRX15613980 SRS13314709 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr27 3 Dr27 3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 15 27 3 skin 15 27 3 skin 15 27 3 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6016 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     15-27-3-skin-RNA_R1.fq.gz 15-27-3-skin-RNA_R2.fq.gz fastq fastq 7913211900.0 26377373.0 15 27 3 skin RNA R1.fq.gz 0:150 1:150 A:2076008636;C:1844679397;G:1885171351;T:2107194429;N:158087 150 150     2076008636 1844679397 1885171351 2107194429 158087 SRX15613980 SRS13314709 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.94254 0.94213 0.06887 0.06809 0.71192 0.71701 0.47169 0.47147 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure
70156 70156 SRR19561976 SRX15613974 SRS13314708 SRP378802 PRJNA846110 Danio rerio Raw sequence reads PRJNA846110 Other Temperature dependence of RNA editing in six tissues of the zebrafish Danio rerio       Dr27 2 Dr27 2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:adult|sex:female|tissue:multi tissue|aliquot:27 replicate 2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult female 10 27 2 skin 10 27 2 skin 10 27 2 skin All strand specific RNA seq libraries were constructed using VAHTS Stranded mRNA seq library Prep kit for Illumina v2 Vazyme Biotech Co. Ltd NR612 02 and subjected to 150bp paired end sequencing on a Novaseq 6010 illumina platform.     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP378802     10-27-2-skin-RNA_R1.fq.gz 10-27-2-skin-RNA_R2.fq.gz fastq fastq 7498714500.0 24995715.0 10 27 2 skin RNA R1.fq.gz 0:150 1:150 A:1911552417;C:1806172582;G:1833987572;T:1946852984;N:148945 150 150     1911552417 1806172582 1833987572 1946852984 148945 SRX15613974 SRS13314708 SRA1432943 shanghai ocean university|College of Fisheries and Life Science shanghai ocean university 2 0.95554 0.95451 0.05031 0.04915 0.72754 0.73385 0.4814 0.46469 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-07 Adult Adult Skin Surface Structure

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;