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103 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PolyA" and tissue_curation = "Gut"

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tissue_curation_coarse 1

tissue_curation 1

  • Gut · 103 ✖

technology 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_source 1

experiment.library_selection 1

  • PolyA · 103 ✖

experiment.library_layout 1

  • PAIRED · 103 ✖

devstage_curation_coarse 1

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
29575 29575 SRR27387418 SRX23063709 SRS20023731 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 6   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate6|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 6 T8 6 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A54_1.fastq.gz A54_2.fastq.gz fastq fastq 8459790000.0 28199300.0 A54 1.fastq.gz 0:150 1:150 A:2287135948;C:1957145280;G:1959338891;T:2256075943;N:93938 150 150     2287135948 1957145280 1959338891 2256075943 93938 SRX23063709 SRS20023731 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92583 0.92422 0.06345 0.06263 0.75718 0.75757 0.52145 0.5361 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29576 29576 SRR27387419 SRX23063708 SRS20023730 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 5   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 5 T8 5 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A53_1.fastq.gz A53_2.fastq.gz fastq fastq 8302022700.0 27673409.0 A53 1.fastq.gz 0:150 1:150 A:2241277601;C:1925048164;G:1920142999;T:2215462687;N:91249 150 150     2241277601 1925048164 1920142999 2215462687 91249 SRX23063708 SRS20023730 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92711 0.92566 0.06314 0.06353 0.75221 0.75219 0.541 0.53579 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29577 29577 SRR27387420 SRX23063707 SRS20023729 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 4   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate4|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 4 T8 4 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A49_1.fastq.gz A49_2.fastq.gz fastq fastq 6939976800.0 23133256.0 A49 1.fastq.gz 0:150 1:150 A:1895013575;C:1589528661;G:1585890890;T:1869466351;N:77323 150 150     1895013575 1589528661 1585890890 1869466351 77323 SRX23063707 SRS20023729 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92632 0.92542 0.06323 0.06265 0.75588 0.75722 0.55002 0.55324 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29578 29578 SRR27387421 SRX23063706 SRS20023728 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 3   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 3 T8 3 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A44_1.fastq.gz A44_2.fastq.gz fastq fastq 9116379900.0 30387933.0 A44 1.fastq.gz 0:150 1:150 A:2462347514;C:2113718621;G:2112401730;T:2427812186;N:99849 150 150     2462347514 2113718621 2112401730 2427812186 99849 SRX23063706 SRS20023728 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93154 0.92882 0.06321 0.06277 0.75499 0.75519 0.54224 0.542 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29579 29579 SRR27387422 SRX23063705 SRS20023727 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 2   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 2 T8 2 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A43_1.fastq.gz A43_2.fastq.gz fastq fastq 7681997100.0 25606657.0 A43 1.fastq.gz 0:150 1:150 A:2098281007;C:1758609887;G:1757658923;T:2067364339;N:82944 150 150     2098281007 1758609887 1757658923 2067364339 82944 SRX23063705 SRS20023727 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92257 0.92131 0.07154 0.07125 0.74769 0.74712 0.52352 0.51843 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29580 29580 SRR27387423 SRX23063704 SRS20023726 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Combined Intestine combined intestine 1   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:combined intestine replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T8 1 T8 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A29_1.fastq.gz A29_2.fastq.gz fastq fastq 8869294500.0 29564315.0 A29 1.fastq.gz 0:150 1:150 A:2411657291;C:2043119196;G:2038118093;T:2376336869;N:63051 150 150     2411657291 2043119196 2038118093 2376336869 63051 SRX23063704 SRS20023726 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.9293 0.93157 0.06846 0.06859 0.75138 0.75209 0.54348 0.54178 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29582 29582 SRR27387425 SRX23063702 SRS20023724 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Nanoplastics Intestine nps intestine 5   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:nps intestine replicate5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T7 5 T7 5 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A51_1.fastq.gz A51_2.fastq.gz fastq fastq 8229865500.0 27432885.0 A51 1.fastq.gz 0:150 1:150 A:2239224965;C:1891494000;G:1890511233;T:2208544358;N:90944 150 150     2239224965 1891494000 1890511233 2208544358 90944 SRX23063702 SRS20023724 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.9282 0.92676 0.06786 0.06815 0.74566 0.74673 0.54961 0.55067 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29583 29583 SRR27387426 SRX23063701 SRS20023723 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Nanoplastics Intestine nps intestine 4   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:nps intestine replicate4|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T7 4 T7 4 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A50_1.fastq.gz A50_2.fastq.gz fastq fastq 8549274300.0 28497581.0 A50 1.fastq.gz 0:150 1:150 A:2321938070;C:1971518879;G:1967040023;T:2288683614;N:93714 150 150     2321938070 1971518879 1967040023 2288683614 93714 SRX23063701 SRS20023723 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93231 0.93126 0.06361 0.06304 0.7527 0.75211 0.48289 0.48336 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29584 29584 SRR27387427 SRX23063700 SRS20023722 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Nanoplastics Intestine nps intestine 3   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:nps intestine replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T7 3 T7 3 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A48_1.fastq.gz A48_2.fastq.gz fastq fastq 8065026000.0 26883420.0 A48 1.fastq.gz 0:150 1:150 A:2177870889;C:1870003683;G:1870725132;T:2146337507;N:88789 150 150     2177870889 1870003683 1870725132 2146337507 88789 SRX23063700 SRS20023722 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92891 0.92753 0.05842 0.05778 0.71991 0.72009 0.51653 0.51675 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29585 29585 SRR27387428 SRX23063699 SRS20023721 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Nanoplastics Intestine nps intestine 2   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:nps intestine replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T7 2 T7 2 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A42_1.fastq.gz A42_2.fastq.gz fastq fastq 8391356700.0 27971189.0 A42 1.fastq.gz 0:150 1:150 A:2247673277;C:1962692430;G:1966871884;T:2214026582;N:92527 150 150     2247673277 1962692430 1966871884 2214026582 92527 SRX23063699 SRS20023721 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93153 0.93045 0.05902 0.05934 0.75424 0.75546 0.548 0.54354 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29586 29586 SRR27387429 SRX23063698 SRS20023720 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Nanoplastics Intestine nps intestine 1   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:nps intestine replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T7 1 T7 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A31_1.fastq.gz A31_2.fastq.gz fastq fastq 8236557000.0 27455190.0 A31 1.fastq.gz 0:150 1:150 A:2204148101;C:1929010419;G:1925723147;T:2177582914;N:92419 150 150     2204148101 1929010419 1925723147 2177582914 92419 SRX23063698 SRS20023720 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93739 0.93581 0.06216 0.06176 0.75057 0.75049 0.54176 0.53414 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29587 29587 SRR27387430 SRX23063697 SRS20023719 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 6   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate6|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 6 T6 6 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A56_1.fastq.gz A56_2.fastq.gz fastq fastq 6435464400.0 21451548.0 A56 1.fastq.gz 0:150 1:150 A:1748400934;C:1486171533;G:1481023797;T:1719795546;N:72590 150 150     1748400934 1486171533 1481023797 1719795546 72590 SRX23063697 SRS20023719 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92722 0.92559 0.0729 0.07288 0.74288 0.74343 0.53587 0.52589 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29588 29588 SRR27387431 SRX23063696 SRS20023718 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 5   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 5 T6 5 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A40_1.fastq.gz A40_2.fastq.gz fastq fastq 8749914000.0 29166380.0 A40 1.fastq.gz 0:150 1:150 A:2338416402;C:2051360445;G:2055480569;T:2304561447;N:95137 150 150     2338416402 2051360445 2055480569 2304561447 95137 SRX23063696 SRS20023718 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.94523 0.9504 0.03896 0.03887 0.80661 0.80728 0.46402 0.45996 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29589 29589 SRR27387432 SRX23063695 SRS20023717 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 4   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate4|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 4 T6 4 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A39_1.fastq.gz A39_2.fastq.gz fastq fastq 8140938300.0 27136461.0 A39 1.fastq.gz 0:150 1:150 A:2198617601;C:1888830697;G:1887283102;T:2166117857;N:89043 150 150     2198617601 1888830697 1887283102 2166117857 89043 SRX23063695 SRS20023717 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92636 0.92532 0.05883 0.0588 0.71689 0.71593 0.52397 0.5214 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29590 29590 SRR27387433 SRX23063694 SRS20023716 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 3   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 3 T6 3 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A35_1.fastq.gz A35_2.fastq.gz fastq fastq 6912319200.0 23041064.0 A35 1.fastq.gz 0:150 1:150 A:1895216825;C:1576630157;G:1574441195;T:1865953455;N:77568 150 150     1895216825 1576630157 1574441195 1865953455 77568 SRX23063694 SRS20023716 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92983 0.92816 0.072 0.07173 0.76601 0.76615 0.55997 0.55562 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29591 29591 SRR27387434 SRX23063693 SRS20023715 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 2   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 2 T6 2 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A34_1.fastq.gz A34_2.fastq.gz fastq fastq 7279802100.0 24266007.0 A34 1.fastq.gz 0:150 1:150 A:1989158951;C:1663891494;G:1668311413;T:1958359476;N:80766 150 150     1989158951 1663891494 1668311413 1958359476 80766 SRX23063693 SRS20023715 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92923 0.92655 0.06821 0.068 0.74042 0.74128 0.54366 0.54276 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29593 29593 SRR27387436 SRX23063691 SRS20023713 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       6PPDQ Intestine 6ppdq intestine 1   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:6ppdq intestine replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T6 1 T6 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A30_1.fastq.gz A30_2.fastq.gz fastq fastq 7219947600.0 24066492.0 A30 1.fastq.gz 0:150 1:150 A:1901354175;C:1717600917;G:1716606554;T:1884305293;N:80661 150 150     1901354175 1717600917 1716606554 1884305293 80661 SRX23063691 SRS20023713 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93375 0.93214 0.05513 0.05567 0.74759 0.74698 0.5475 0.54855 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29594 29594 SRR27387437 SRX23063690 SRS20023712 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 6   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate6|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 6 T5 6 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A46_1.fastq.gz A46_2.fastq.gz fastq fastq 8509361100.0 28364537.0 A46 1.fastq.gz 0:150 1:150 A:2341600956;C:1932495972;G:1930461855;T:2304710926;N:91391 150 150     2341600956 1932495972 1930461855 2304710926 91391 SRX23063690 SRS20023712 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92542 0.92408 0.07033 0.06986 0.77234 0.77199 0.55246 0.55942 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29595 29595 SRR27387438 SRX23063689 SRS20023711 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 5   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 5 T5 5 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A45_1.fastq.gz A45_2.fastq.gz fastq fastq 7856294100.0 26187647.0 A45 1.fastq.gz 0:150 1:150 A:2129077180;C:1813666476;G:1813868805;T:2099595491;N:86148 150 150     2129077180 1813666476 1813868805 2099595491 86148 SRX23063689 SRS20023711 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93087 0.92866 0.06398 0.06358 0.75481 0.75597 0.55424 0.55289 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29596 29596 SRR27387439 SRX23063688 SRS20023710 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 4   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate4|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 4 T5 4 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A38_1.fastq.gz A38_2.fastq.gz fastq fastq 8039208600.0 26797362.0 A38 1.fastq.gz 0:150 1:150 A:2201215819;C:1836215616;G:1833348507;T:2168337651;N:91007 150 150     2201215819 1836215616 1833348507 2168337651 91007 SRX23063688 SRS20023710 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.9219 0.91957 0.0702 0.06947 0.76343 0.76493 0.55355 0.54863 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29597 29597 SRR27387440 SRX23063687 SRS20023709 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 3   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 3 T5 3 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A37_1.fastq.gz A37_2.fastq.gz fastq fastq 8253642600.0 27512142.0 A37 1.fastq.gz 0:150 1:150 A:2254958000;C:1889478281;G:1886099650;T:2223014303;N:92366 150 150     2254958000 1889478281 1886099650 2223014303 92366 SRX23063687 SRS20023709 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92632 0.92477 0.06268 0.06279 0.76719 0.76682 0.53773 0.53566 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29598 29598 SRR27387441 SRX23063686 SRS20023708 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 2   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate2|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 2 T5 2 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A33_1.fastq.gz A33_2.fastq.gz fastq fastq 8276959500.0 27589865.0 A33 1.fastq.gz 0:150 1:150 A:2244800716;C:1909951370;G:1909130637;T:2212988991;N:87786 150 150     2244800716 1909951370 1909130637 2212988991 87786 SRX23063686 SRS20023708 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.93248 0.93089 0.06402 0.06475 0.701 0.7012 0.53585 0.53722 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
29599 29599 SRR27387442 SRX23063685 SRS20023707 SRP480720 PRJNA1059246 Mixture toxicity of 6PPD quinone and polystyrene nanoplastics in zebrafish PRJNA1059246 Other Tyre wear particles are the second largest source of microplastics in the ocean following abrasion of synthetic fibres. In addition to the particles themselves TWPs contain many harmful chemicals including 6PPD. This chemical reacts with atmospheric ozone and forms the toxic compound 6PPD quinone which poses a danger to aquatic life. There is a knowledge gap in understanding risks associated with thecombined toxicity of nanoplastics and 6PPDq. The present study aimed to investigate the toxicity of NPs and 6PPDq on adult zebrafish. However we found significant hyperlocomotion in zebrafish exposed to 6PPDq and this effect was even more substantial post co exposure with PSNPs. The more pronounced toxic response in coexposed zebrafish was also observed at the transcriptomic level. KEGG pathways analysis identified mitochondrial dysfunction in the intestine and metabolic disturbances in the liver. These results highlight the significance of mixture toxicity when studying the effects of NPs and associated chemicals like 6PPDq.       Control Intestine control intestine 1   strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:16 weeks|dev stage:adult|sex:male|tissue:intestine|biomaterial provider:not applicable|birth date:not applicable|birth location:not applicable|breeding history:not applicable|breeding method:not applicable|cell line:not applicable|cell subtype:not applicable|cell type:not applicable|collected by:Shubham Varshney|collection date:2023 06|culture collection:not applicable|death date:not applicable|disease:not applicable|disease stg:not applicable|genotype:not applicable|geo loc name:not applicable|growth protocol:not applicable|health state:not applicable|isolation source:not applicable|lat lon:not applicable|phenotype:not applicable|sample type:not applicable|specimen voucher:not applicable|store cond:not applicable|stud book number:not applicable|treatment:control intestine replicate1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish T5 1 T5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 550   SRP480720     A32_1.fastq.gz A32_2.fastq.gz fastq fastq 7955418900.0 26518063.0 A32 1.fastq.gz 0:150 1:150 A:2236485440;C:1768380410;G:1765867470;T:2184596828;N:88752 150 150     2236485440 1768380410 1765867470 2184596828 88752 SRX23063685 SRS20023707 SRA1777576 Nord University|Faculty of Biosciences and Aquaculture Nord University 2 0.92662 0.92301 0.071 0.07061 0.75207 0.75158 0.53095 0.54507 150 150 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Norway 2023-12-30 Adult Adult Gut Digestive System
55951 55951 SRR10827995 SRX7501389 SRS5942789 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR011   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate10|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR011 ZR011 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR011_S00_L009_R2_001.fastq.gz lane9-ZR011_S00_L009_R1_001.fastq.gz fastq fastq 9665147298.0 32003799.0 lane9 ZR011 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2665223251;C:2186863125;G:2211599706;T:2600518585;N:942631 151 151     2665223251 2186863125 2211599706 2600518585 942631 SRX7501389 SRS5942789 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.85775 0.85388 0.06267 0.06297 0.78766 0.79097 0.54825 0.54162 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55952 55952 SRR10827996 SRX7501388 SRS5942788 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR010   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate9|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR010 ZR010 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR010_S00_L009_R2_001.fastq.gz lane9-ZR010_S00_L009_R1_001.fastq.gz fastq fastq 10313891618.0 34151959.0 lane9 ZR010 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2810497988;C:2363542718;G:2386667646;T:2752188319;N:994947 151 151     2810497988 2363542718 2386667646 2752188319 994947 SRX7501388 SRS5942788 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86439 0.85421 0.05536 0.05624 0.78378 0.78847 0.5643 0.5428 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55953 55953 SRR10827997 SRX7501387 SRS5942787 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR009   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate8|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR009 ZR009 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR009_S00_L009_R2_001.fastq.gz lane9-ZR009_S00_L009_R1_001.fastq.gz fastq fastq 8998700946.0 29797023.0 lane9 ZR009 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2553315628;C:1959457429;G:1980318504;T:2504726656;N:882729 151 151     2553315628 1959457429 1980318504 2504726656 882729 SRX7501387 SRS5942787 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.80444 0.8015 0.08208 0.08274 0.78634 0.78813 0.56791 0.56822 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55954 55954 SRR10827998 SRX7501386 SRS5942786 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR008   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate7|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR008 ZR008 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR008_S00_L009_R1_001.fastq.gz lane9-ZR008_S00_L009_R2_001.fastq.gz fastq fastq 9206500200.0 30485100.0 lane9 ZR008 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2571733836;C:2048238935;G:2081481702;T:2504158985;N:886742 151 151     2571733836 2048238935 2081481702 2504158985 886742 SRX7501386 SRS5942786 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.84315 0.84243 0.06679 0.068 0.79026 0.79263 0.54865 0.52814 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55955 55955 SRR10827999 SRX7501385 SRS5942785 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR006   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate6|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR006 ZR006 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR006_S00_L009_R1_001.fastq.gz lane9-ZR006_S00_L009_R2_001.fastq.gz fastq fastq 9469616190.0 31356345.0 lane9 ZR006 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2598567090;C:2156360016;G:2166235031;T:2547531313;N:922740 151 151     2598567090 2156360016 2166235031 2547531313 922740 SRX7501385 SRS5942785 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86997 0.86634 0.06206 0.06323 0.7853 0.7877 0.5039 0.48672 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55956 55956 SRR10828000 SRX7501384 SRS5942783 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR005   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate5|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR005 ZR005 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR005_S00_L009_R1_001.fastq.gz lane9-ZR005_S00_L009_R2_001.fastq.gz fastq fastq 8265125732.0 27367966.0 lane9 ZR005 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2271031367;C:1878130541;G:1893994523;T:2221168810;N:800491 151 151     2271031367 1878130541 1893994523 2221168810 800491 SRX7501384 SRS5942783 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.87646 0.7655 0.06913 0.06038 0.79401 0.80915 0.54875 0.54807 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55957 55957 SRR10828001 SRX7501383 SRS5942784 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR004   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate4|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR004 ZR004 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR004_S00_L009_R1_001.fastq.gz lane9-ZR004_S00_L009_R2_001.fastq.gz fastq fastq 9015407586.0 29852343.0 lane9 ZR004 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2508921769;C:2018051929;G:2030281337;T:2457279135;N:873416 151 151     2508921769 2018051929 2030281337 2457279135 873416 SRX7501383 SRS5942784 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.84988 0.83488 0.06628 0.06644 0.77344 0.77843 0.55247 0.5423 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55958 55958 SRR10828002 SRX7501382 SRS5942782 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR022   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate21|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR022 ZR022 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR022_S00_L009_R1_001.fastq.gz lane9-ZR022_S00_L009_R2_001.fastq.gz fastq fastq 13741876102.0 45502901.0 lane9 ZR022 S00 L009 R1 001.fastq.gz 0:151 1:151 A:3931077197;C:2931142966;G:2955027469;T:3923313652;N:1314818 151 151     3931077197 2931142966 2955027469 3923313652 1314818 SRX7501382 SRS5942782 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.88334 0.87862 0.09332 0.09391 0.77711 0.78113 0.55947 0.54508 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55959 55959 SRR10828003 SRX7501381 SRS5942781 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR003   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate3|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR003 ZR003 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR003_S00_L009_R1_001.fastq.gz lane9-ZR003_S00_L009_R2_001.fastq.gz fastq fastq 11201243420.0 37090210.0 lane9 ZR003 S00 L009 R1 001.fastq.gz 0:151 1:151 A:3127283035;C:2496207030;G:2513262555;T:3063404560;N:1086240 151 151     3127283035 2496207030 2513262555 3063404560 1086240 SRX7501381 SRS5942781 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86792 0.8632 0.06784 0.06862 0.78867 0.79308 0.53988 0.52892 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55960 55960 SRR10828004 SRX7501380 SRS5942780 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR021   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate20|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR021 ZR021 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR021_S00_L009_R1_001.fastq.gz lane9-ZR021_S00_L009_R2_001.fastq.gz fastq fastq 10099985924.0 33443662.0 lane9 ZR021 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2774168141;C:2288982049;G:2309143011;T:2726709515;N:983208 151 151     2774168141 2288982049 2309143011 2726709515 983208 SRX7501380 SRS5942780 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86982 0.86834 0.07188 0.07308 0.78717 0.78987 0.5574 0.5503 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55961 55961 SRR10828005 SRX7501379 SRS5942779 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR020   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate19|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR020 ZR020 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR020_S00_L009_R1_001.fastq.gz lane9-ZR020_S00_L009_R2_001.fastq.gz fastq fastq 10454972428.0 34619114.0 lane9 ZR020 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2839651351;C:2416116684;G:2429373737;T:2768795024;N:1035632 151 151     2839651351 2416116684 2429373737 2768795024 1035632 SRX7501379 SRS5942779 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86093 0.86611 0.03397 0.03484 0.83104 0.83327 0.30434 0.30026 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55962 55962 SRR10828006 SRX7501378 SRS5942778 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR019   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate18|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR019 ZR019 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR019_S00_L009_R2_001.fastq.gz lane9-ZR019_S00_L009_R1_001.fastq.gz fastq fastq 10719453458.0 35494879.0 lane9 ZR019 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2914826334;C:2463706695;G:2484150600;T:2855735087;N:1034742 151 151     2914826334 2463706695 2484150600 2855735087 1034742 SRX7501378 SRS5942778 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.87668 0.87454 0.05478 0.05538 0.78884 0.7906 0.53897 0.5064 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55963 55963 SRR10828007 SRX7501377 SRS5942777 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR018   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate17|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR018 ZR018 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR018_S00_L009_R1_001.fastq.gz lane9-ZR018_S00_L009_R2_001.fastq.gz fastq fastq 6358250620.0 21053810.0 lane9 ZR018 S00 L009 R1 001.fastq.gz 0:151 1:151 A:1669813509;C:1524057927;G:1530947497;T:1632824279;N:607408 151 151     1669813509 1524057927 1530947497 1632824279 607408 SRX7501377 SRS5942777 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.89698 0.89547 0.05683 0.05916 0.81848 0.82089 0.56455 0.54732 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55964 55964 SRR10828008 SRX7501376 SRS5942776 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR017   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate16|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR017 ZR017 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR017_S00_L009_R1_001.fastq.gz lane9-ZR017_S00_L009_R2_001.fastq.gz fastq fastq 8141425324.0 26958362.0 lane9 ZR017 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2210048052;C:1874541787;G:1892972101;T:2163066000;N:797384 151 151     2210048052 1874541787 1892972101 2163066000 797384 SRX7501376 SRS5942776 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.8799 0.75762 0.05488 0.04911 0.78587 0.80105 0.5506 0.52986 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55965 55965 SRR10828009 SRX7501375 SRS5942775 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR016   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate15|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR016 ZR016 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR016_S00_L009_R1_001.fastq.gz lane9-ZR016_S00_L009_R2_001.fastq.gz fastq fastq 6614210116.0 21901358.0 lane9 ZR016 S00 L009 R1 001.fastq.gz 0:151 1:151 A:1784851559;C:1535505997;G:1547676414;T:1745543179;N:632967 151 151     1784851559 1535505997 1547676414 1745543179 632967 SRX7501375 SRS5942775 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.90312 0.89783 0.0713 0.07131 0.79127 0.79579 0.54495 0.54771 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55966 55966 SRR10828010 SRX7501374 SRS5942774 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR015   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate14|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR015 ZR015 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR015_S00_L009_R1_001.fastq.gz lane9-ZR015_S00_L009_R2_001.fastq.gz fastq fastq 11286865554.0 37373727.0 lane9 ZR015 S00 L009 R1 001.fastq.gz 0:151 1:151 A:3141361472;C:2517784036;G:2559469326;T:3067139151;N:1111569 151 151     3141361472 2517784036 2559469326 3067139151 1111569 SRX7501374 SRS5942774 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.83638 0.834 0.06549 0.06651 0.78305 0.78524 0.55623 0.54699 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55967 55967 SRR10828011 SRX7501373 SRS5942773 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR014   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate13|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR014 ZR014 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR014_S00_L009_R1_001.fastq.gz lane9-ZR014_S00_L009_R2_001.fastq.gz fastq fastq 7845860038.0 25979669.0 lane9 ZR014 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2154729734;C:1778438216;G:1807077828;T:2104855748;N:758512 151 151     2154729734 1778438216 1807077828 2104855748 758512 SRX7501373 SRS5942773 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86906 0.86569 0.06254 0.06319 0.78886 0.79336 0.54972 0.51512 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55968 55968 SRR10828012 SRX7501372 SRS5942772 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR013   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate12|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR013 ZR013 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR013_S00_L009_R1_001.fastq.gz lane9-ZR013_S00_L009_R2_001.fastq.gz fastq fastq 6510195276.0 21556938.0 lane9 ZR013 S00 L009 R1 001.fastq.gz 0:151 1:151 A:1814210714;C:1453505783;G:1467029872;T:1774830373;N:618534 151 151     1814210714 1453505783 1467029872 1774830373 618534 SRX7501372 SRS5942772 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.85325 0.85017 0.06548 0.06721 0.79815 0.79939 0.55953 0.53689 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55969 55969 SRR10828013 SRX7501371 SRS5942771 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR012   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate11|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR012 ZR012 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR012_S00_L009_R1_001.fastq.gz lane9-ZR012_S00_L009_R2_001.fastq.gz fastq fastq 6797139368.0 22507084.0 lane9 ZR012 S00 L009 R1 001.fastq.gz 0:151 1:151 A:1862619574;C:1544924953;G:1561143823;T:1827800623;N:650395 151 151     1862619574 1544924953 1561143823 1827800623 650395 SRX7501371 SRS5942771 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.87394 0.86984 0.05857 0.05973 0.78267 0.78535 0.56602 0.53678 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55970 55970 SRR10828014 SRX7501370 SRS5942769 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR002   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate2|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR002 ZR002 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR002_S00_L009_R1_001.fastq.gz lane9-ZR002_S00_L009_R2_001.fastq.gz fastq fastq 12048079506.0 39894303.0 lane9 ZR002 S00 L009 R1 001.fastq.gz 0:151 1:151 A:3325434575;C:2709618615;G:2744517142;T:3267339636;N:1169538 151 151     3325434575 2709618615 2744517142 3267339636 1169538 SRX7501370 SRS5942769 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.86595 0.86133 0.06795 0.06891 0.79316 0.79711 0.51314 0.50071 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
55971 55971 SRR10828015 SRX7501369 SRS5942770 SRP239446 PRJNA598916 Zebrafish intestinal gene expression PRJNA598916 Other An analysis of zebrafish intestinal gene expression         ZR001   strain:5D|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|dev stage:Adult|sex:male|tissue:whole intestine|replicate:replicate1|BioSampleModel:Model organism or animal                 RNA Seq of Danio rerio: adult 5D intestine ZR001 ZR001 Illumina Paired end sequencing     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 4000   SRP239446     lane9-ZR001_S00_L009_R1_001.fastq.gz lane9-ZR001_S00_L009_R2_001.fastq.gz fastq fastq 8481414206.0 28084153.0 lane9 ZR001 S00 L009 R1 001.fastq.gz 0:151 1:151 A:2392757541;C:1869273565;G:1884123300;T:2334437148;N:822652 151 151     2392757541 1869273565 1884123300 2334437148 822652 SRX7501369 SRS5942770 SRA1020118 Oregon State University|Microbiology Oregon State University 2 0.79806 0.66202 0.06966 0.05946 0.7809 0.79849 0.52853 0.52572 151 151 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   United States 2020-01-04 Adult Adult Gut Digestive System
68333 68333 SRR17714676 SRX13877733 SRS11747906 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         KO in 4   strain:AB type|isolate:knockout|breed:KO in 4|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish KO in 4 KO in 4 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_KO-in-4_good_1.fq.gz Daniorerio_KO-in-4_good_2.fq.gz fastq fastq 8086373448.0 27114595.0 Daniorerio KO in 4 good 1.fq.gz 0:149.11 1:149.11 A:2114635166;C:1908498639;G:1940373806;T:2122462453;N:403384 149 149     2114635166 1908498639 1940373806 2122462453 403384 SRX13877733 SRS11747906 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.93003 0.92992 0.06176 0.06188 0.70163 0.70429 0.48922 0.48903 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68334 68334 SRR17714677 SRX13877732 SRS11747905 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         KO in 3   strain:AB type|isolate:knockout|breed:KO in 3|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish KO in 3 KO in 3 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_KO-in-3_good_1.fq.gz Daniorerio_KO-in-3_good_2.fq.gz fastq fastq 7347019970.0 24569878.0 Daniorerio KO in 3 good 1.fq.gz 0:149.51 1:149.51 A:1946037694;C:1706069195;G:1743974411;T:1950573440;N:365230 149 149     1946037694 1706069195 1743974411 1950573440 365230 SRX13877732 SRS11747905 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92803 0.92694 0.07821 0.07735 0.73367 0.73438 0.51472 0.52472 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68335 68335 SRR17714678 SRX13877731 SRS11747903 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         KO in 2   strain:AB type|isolate:knockout|breed:KO in 2|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish KO in 2 KO in 2 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_KO-in-2_good_1.fq.gz Daniorerio_KO-in-2_good_2.fq.gz fastq fastq 8301032318.0 27790678.0 Daniorerio KO in 2 good 1.fq.gz 0:149.35 1:149.35 A:2179637699;C:1945190004;G:1982782844;T:2193010761;N:411010 149 149     2179637699 1945190004 1982782844 2193010761 411010 SRX13877731 SRS11747903 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.94456 0.9438 0.04849 0.04881 0.77191 0.77333 0.36067 0.3652 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68344 68344 SRR17714687 SRX13877722 SRS11747895 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         KO in 1   strain:AB type|isolate:knockout|breed:KO in 1|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish KO in 1 KO in 1 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_KO-in-1_good_1.fq.gz Daniorerio_KO-in-1_good_2.fq.gz fastq fastq 7827900066.0 26180712.0 Daniorerio KO in 1 good 1.fq.gz 0:149.50 1:149.50 A:2080601651;C:1809785147;G:1846482300;T:2090643065;N:387903 149 149     2080601651 1809785147 1846482300 2090643065 387903 SRX13877722 SRS11747895 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92406 0.92332 0.08136 0.08064 0.72596 0.72541 0.51544 0.52064 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68345 68345 SRR17714688 SRX13877721 SRS11747893 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         WT in 7   strain:AB type|isolate:wild type|breed:WT in 7|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish WT in 7 WT in 7 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_WT-in-7_good_1.fq.gz Daniorerio_WT-in-7_good_2.fq.gz fastq fastq 6525605248.0 21813313.0 Daniorerio WT in 7 good 1.fq.gz 0:149.58 1:149.58 A:1779067091;C:1469759022;G:1500273479;T:1776177556;N:328100 149 149     1779067091 1469759022 1500273479 1776177556 328100 SRX13877721 SRS11747893 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.90976 0.90971 0.08435 0.08468 0.72709 0.7289 0.5376 0.53733 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68346 68346 SRR17714689 SRX13877720 SRS11747894 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         WT in 4   strain:AB type|isolate:wild type|breed:WT in 4|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish WT in 4 WT in 4 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_WT-in-4_good_1.fq.gz Daniorerio_WT-in-4_good_2.fq.gz fastq fastq 9307471244.0 31204763.0 Daniorerio WT in 4 good 1.fq.gz 0:149.14 1:149.14 A:2485339643;C:2146056187;G:2184301247;T:2491310160;N:464007 149 149     2485339643 2146056187 2184301247 2491310160 464007 SRX13877720 SRS11747894 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.93125 0.9303 0.08758 0.08737 0.72042 0.72066 0.50621 0.50241 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68347 68347 SRR17714690 SRX13877719 SRS11747892 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         WT in 2   strain:AB type|isolate:wild type|breed:WT in 2|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish WT in 2 WT in 2 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_WT-in-2_good_1.fq.gz Daniorerio_WT-in-2_good_2.fq.gz fastq fastq 7284861540.0 24415394.0 Daniorerio WT in 2 good 1.fq.gz 0:149.19 1:149.19 A:1956983508;C:1672191117;G:1698929394;T:1956391871;N:365650 149 149     1956983508 1672191117 1698929394 1956391871 365650 SRX13877719 SRS11747892 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92731 0.92546 0.09355 0.09268 0.73125 0.7317 0.53578 0.51601 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68348 68348 SRR17714691 SRX13877718 SRS11747890 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         WT in 1   strain:AB type|isolate:wild type|breed:WT in 1|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish WT in 1 WT in 1 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_WT-in-1_good_1.fq.gz Daniorerio_WT-in-1_good_2.fq.gz fastq fastq 6846412620.0 22924105.0 Daniorerio WT in 1 good 1.fq.gz 0:149.33 1:149.33 A:1885463202;C:1523755204;G:1559518207;T:1877335306;N:340701 149 149     1885463202 1523755204 1559518207 1877335306 340701 SRX13877718 SRS11747890 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92598 0.92418 0.11749 0.1172 0.7124 0.71287 0.52007 0.52208 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68362 68362 SRR17714705 SRX13877704 SRS11747876 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         MU in 4   strain:AB type|isolate:point mutation|breed:MU in 4|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish MU in 4 MU in 4 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_MU-in-4_good_1.fq.gz Daniorerio_MU-in-4_good_2.fq.gz fastq fastq 6981292910.0 23353513.0 Daniorerio MU in 4 good 1.fq.gz 0:149.47 1:149.47 A:1918651893;C:1556487274;G:1587959315;T:1917844487;N:349941 149 149     1918651893 1556487274 1587959315 1917844487 349941 SRX13877704 SRS11747876 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.90619 0.90539 0.10392 0.10257 0.72581 0.7262 0.50279 0.51648 115 115 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68363 68363 SRR17714706 SRX13877703 SRS11747877 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         MU in 3   strain:AB type|isolate:point mutation|breed:MU in 3|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish MU in 3 MU in 3 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_MU-in-3_good_1.fq.gz Daniorerio_MU-in-3_good_2.fq.gz fastq fastq 6927732356.0 23196580.0 Daniorerio MU in 3 good 1.fq.gz 0:149.33 1:149.33 A:1882979804;C:1564547441;G:1599806601;T:1880055787;N:342723 149 149     1882979804 1564547441 1599806601 1880055787 342723 SRX13877703 SRS11747877 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92662 0.92461 0.09213 0.09138 0.70325 0.70512 0.49198 0.48956 128 128 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68364 68364 SRR17714707 SRX13877702 SRS11747875 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         MU in 2   strain:AB type|isolate:point mutation|breed:MU in 2|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish MU in 2 MU in 2 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_MU-in-2_good_1.fq.gz Daniorerio_MU-in-2_good_2.fq.gz fastq fastq 5935464130.0 19846848.0 Daniorerio MU in 2 good 1.fq.gz 0:149.53 1:149.53 A:1636475982;C:1319113428;G:1341190439;T:1638386007;N:298274 149 149     1636475982 1319113428 1341190439 1638386007 298274 SRX13877702 SRS11747875 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92398 0.92343 0.10356 0.10369 0.71875 0.71999 0.51404 0.52599 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
68365 68365 SRR17714708 SRX13877701 SRS11747874 SRP356388 PRJNA799842 RNA seq of CRISPR/Cas9 mediated genome editing zebrafishes; the alligator pipefish spleen and the small white organ of the lined seahorse. PRJNA799842 Other To explore the function of the gene in spleen development we generated a knockout zebrafish line. To investigate whether the phenotypic consequences in the seahorses were caused by a missense mutation in this gene we generated a point mutation zebrafish line by CRISPR/Cas9 mediated homologous recombination HR. RNA seq of these samples tissues brain liver kidney and intestine were analyzed. In addition to clarify the splenic phenotype of the Syngnathidaes the transcriptomic profiles of the S. biaculeatus spleens and the H. erectus small white organ were also sampled and sequenced.         MU in 1   strain:AB type|isolate:point mutation|breed:MU in 1|age:3 month|dev stage:NA|sex:NA|tissue:intestine|BioSampleModel:Model organism or animal                 RNA seq of zebrafish MU in 1 MU in 1 RNA seq     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina HiSeq 2500   SRP356388   loader:fastq load.py Daniorerio_MU-in-1_good_1.fq.gz Daniorerio_MU-in-1_good_2.fq.gz fastq fastq 6216034614.0 20807316.0 Daniorerio MU in 1 good 1.fq.gz 0:149.37 1:149.37 A:1699351968;C:1392852246;G:1422263891;T:1701253575;N:312934 149 149     1699351968 1392852246 1422263891 1701253575 312934 SRX13877701 SRS11747874 SRA1360632 South China Sea Institute of Oceanology|CAS Key Laboratory of Tropical Marine Bio-Resource South China Sea Institute of Oceanology 2 0.92907 0.92796 0.08789 0.0879 0.73277 0.73415 0.53788 0.53553 150 150 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   China 2022-01-27 Adult Adult Gut Digestive System
71924 71924 SRR22163283 SRX18142185 SRS15643653 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         CT5 1   Treatment:Treatment 1|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S1 5 1 S1 5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S1_5_1.fq.gz S1_5_2.fq.gz fastq fastq 9014027400.0 30046758.0 S1 5 1.fq.gz 0:150 1:150 A:2459911620;C:2065534063;G:2054316794;T:2434183063;N:81860 150 150     2459911620 2065534063 2054316794 2434183063 81860 SRX18142185 SRS15643653 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93772 0.93725 0.08092 0.08041 0.70832 0.70978 0.53684 0.53606 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71925 71925 SRR22163284 SRX18142184 SRS15643652 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         CT4 1   Treatment:Treatment 1|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S1 4 1 S1 4 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S1_4_1.fq.gz S1_4_2.fq.gz fastq fastq 6553685700.0 21845619.0 S1 4 1.fq.gz 0:150 1:150 A:1784449261;C:1498869080;G:1499429078;T:1770878702;N:59579 150 150     1784449261 1498869080 1499429078 1770878702 59579 SRX18142184 SRS15643652 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93877 0.93743 0.08244 0.08155 0.739 0.74097 0.52274 0.52625 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71926 71926 SRR22163285 SRX18142183 SRS15643651 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AH4 1   Treatment:Treatment 5|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S5 4 1 S5 4 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S5_4_1.fq.gz S5_4_2.fq.gz fastq fastq 7564526100.0 25215087.0 S5 4 1.fq.gz 0:150 1:150 A:2043866713;C:1743444091;G:1745247877;T:2031898136;N:69283 150 150     2043866713 1743444091 1745247877 2031898136 69283 SRX18142183 SRS15643651 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94099 0.94529 0.0771 0.07756 0.73265 0.73257 0.52445 0.52332 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71927 71927 SRR22163286 SRX18142182 SRS15643650 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AH5 1   Treatment:Treatment 5|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S5 5 1 S5 5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S5_5_1.fq.gz S5_5_2.fq.gz fastq fastq 6818647200.0 22728824.0 S5 5 1.fq.gz 0:150 1:150 A:1846393621;C:1567500825;G:1568719933;T:1835970147;N:62674 150 150     1846393621 1567500825 1568719933 1835970147 62674 SRX18142182 SRS15643650 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94615 0.94579 0.07548 0.07515 0.73914 0.73951 0.51532 0.52598 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71928 71928 SRR22163287 SRX18142181 SRS15643649 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AH3 1   Treatment:Treatment 5|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S5 3 1 S5 3 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S5_3_1.fq.gz S5_3_2.fq.gz fastq fastq 6450337200.0 21501124.0 S5 3 1.fq.gz 0:150 1:150 A:1752617470;C:1478462961;G:1484526083;T:1734611899;N:118787 150 150     1752617470 1478462961 1484526083 1734611899 118787 SRX18142181 SRS15643649 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93335 0.93224 0.07956 0.07894 0.72825 0.72738 0.5346 0.52833 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71929 71929 SRR22163288 SRX18142180 SRS15643648 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AH2 1   Treatment:Treatment 5|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S5 2 1 S5 2 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S5_2_1.fq.gz S5_2_2.fq.gz fastq fastq 5986383600.0 19954612.0 S5 2 1.fq.gz 0:150 1:150 A:1622252024;C:1375497551;G:1378093904;T:1610485009;N:55112 150 150     1622252024 1375497551 1378093904 1610485009 55112 SRX18142180 SRS15643648 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93679 0.93393 0.0838 0.08262 0.73133 0.73217 0.51866 0.52392 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71930 71930 SRR22163289 SRX18142179 SRS15643647 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AH1 1   Treatment:Treatment 5|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S5 1 1 S5 1 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S5_1_1.fq.gz S5_1_2.fq.gz fastq fastq 6704247600.0 22347492.0 S5 1 1.fq.gz 0:150 1:150 A:1803831988;C:1551064976;G:1554658726;T:1794631530;N:60380 150 150     1803831988 1551064976 1554658726 1794631530 60380 SRX18142179 SRS15643647 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9388 0.93573 0.0764 0.07588 0.72997 0.73198 0.50984 0.51677 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71931 71931 SRR22163290 SRX18142178 SRS15643646 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         CT3 1   Treatment:Treatment 1|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S1 3 1 S1 3 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S1_3_1.fq.gz S1_3_2.fq.gz fastq fastq 6881200500.0 22937335.0 S1 3 1.fq.gz 0:150 1:150 A:1873669495;C:1570999744;G:1573967835;T:1862499052;N:64374 150 150     1873669495 1570999744 1573967835 1862499052 64374 SRX18142178 SRS15643646 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93463 0.93369 0.08182 0.08073 0.73062 0.73109 0.53022 0.53398 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71932 71932 SRR22163291 SRX18142177 SRS15643645 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AL5 1   Treatment:Treatment 4|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S4 5 1 S4 5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S4_5_1.fq.gz S4_5_2.fq.gz fastq fastq 6906950400.0 23023168.0 S4 5 1.fq.gz 0:150 1:150 A:1875574271;C:1581055857;G:1590654807;T:1859555877;N:109588 150 150     1875574271 1581055857 1590654807 1859555877 109588 SRX18142177 SRS15643645 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93012 0.93082 0.08039 0.08038 0.72876 0.72766 0.50636 0.51384 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71933 71933 SRR22163292 SRX18142176 SRS15643644 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AL4 1   Treatment:Treatment 4|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S4 4 1 S4 4 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S4_4_1.fq.gz S4_4_2.fq.gz fastq fastq 6913366800.0 23044556.0 S4 4 1.fq.gz 0:150 1:150 A:1903542067;C:1564730705;G:1563720683;T:1881239696;N:133649 150 150     1903542067 1564730705 1563720683 1881239696 133649 SRX18142176 SRS15643644 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93819 0.93814 0.08097 0.08049 0.73864 0.73803 0.52461 0.51972 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71934 71934 SRR22163293 SRX18142175 SRS15643643 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AL3 1   Treatment:Treatment 4|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S4 3 1 S4 3 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S4_3_1.fq.gz S4_3_2.fq.gz fastq fastq 7190431200.0 23968104.0 S4 3 1.fq.gz 0:150 1:150 A:1952095075;C:1648591963;G:1649351611;T:1940328578;N:63973 150 150     1952095075 1648591963 1649351611 1940328578 63973 SRX18142175 SRS15643643 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93582 0.93496 0.08069 0.08067 0.72886 0.72957 0.52625 0.52111 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71935 71935 SRR22163294 SRX18142174 SRS15643642 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AL2 1   Treatment:Treatment 4|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S4 2 1 S4 2 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S4_2_1.fq.gz S4_2_2.fq.gz fastq fastq 6831432300.0 22771441.0 S4 2 1.fq.gz 0:150 1:150 A:1845236693;C:1574587408;G:1577738295;T:1833814473;N:55431 150 150     1845236693 1574587408 1577738295 1833814473 55431 SRX18142174 SRS15643642 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9281 0.93072 0.08127 0.08155 0.72947 0.72955 0.50902 0.49335 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71936 71936 SRR22163295 SRX18142173 SRS15643641 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         AL1 1   Treatment:Treatment 4|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S4 1 1 S4 1 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S4_1_1.fq.gz S4_1_2.fq.gz fastq fastq 5971778100.0 19905927.0 S4 1 1.fq.gz 0:150 1:150 A:1620005758;C:1371651740;G:1371501168;T:1608565768;N:53666 150 150     1620005758 1371651740 1371501168 1608565768 53666 SRX18142173 SRS15643641 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93253 0.93166 0.08427 0.08351 0.72249 0.72206 0.52446 0.52271 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71937 71937 SRR22163296 SRX18142172 SRS15643640 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         BG4 1   Treatment:Treatment 3|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S3 4 1 S3 4 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S3_4_1.fq.gz S3_4_2.fq.gz fastq fastq 6473786700.0 21579289.0 S3 4 1.fq.gz 0:150 1:150 A:1748612918;C:1491816166;G:1491960552;T:1741338722;N:58342 150 150     1748612918 1491816166 1491960552 1741338722 58342 SRX18142172 SRS15643640 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94269 0.9404 0.07074 0.06953 0.73789 0.73957 0.53497 0.53084 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71938 71938 SRR22163297 SRX18142171 SRS15643639 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         BG5 1   Treatment:Treatment 3|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S3 5 1 S3 5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S3_5_1.fq.gz S3_5_2.fq.gz fastq fastq 6084837000.0 20282790.0 S3 5 1.fq.gz 0:150 1:150 A:1645004103;C:1402281017;G:1405601059;T:1631855984;N:94837 150 150     1645004103 1402281017 1405601059 1631855984 94837 SRX18142171 SRS15643639 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93774 0.93575 0.07708 0.07646 0.7377 0.73866 0.53065 0.5251 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71939 71939 SRR22163298 SRX18142170 SRS15643638 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         BG3 1   Treatment:Treatment 3|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S3 3 1 S3 3 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S3_3_1.fq.gz S3_3_2.fq.gz fastq fastq 6556379100.0 21854597.0 S3 3 1.fq.gz 0:150 1:150 A:1762889088;C:1519118015;G:1520823814;T:1753488491;N:59692 150 150     1762889088 1519118015 1520823814 1753488491 59692 SRX18142170 SRS15643638 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94026 0.93983 0.06924 0.06895 0.73998 0.74144 0.5373 0.53681 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71940 71940 SRR22163299 SRX18142169 SRS15643637 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         BG2 1   Treatment:Treatment 3|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S3 2 1 S3 2 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S3_2_1.fq.gz S3_2_2.fq.gz fastq fastq 5974464300.0 19914881.0 S3 2 1.fq.gz 0:150 1:150 A:1654682042;C:1337458286;G:1342575126;T:1639695199;N:53647 150 150     1654682042 1337458286 1342575126 1639695199 53647 SRX18142169 SRS15643637 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.92677 0.92934 0.09511 0.09465 0.75124 0.75195 0.5478 0.54496 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71941 71941 SRR22163300 SRX18142168 SRS15643636 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         BG1 1   Treatment:Treatment 3|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S3 1 1 S3 1 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S3_1_1.fq.gz S3_1_2.fq.gz fastq fastq 6394236600.0 21314122.0 S3 1 1.fq.gz 0:150 1:150 A:1734112101;C:1468810954;G:1473411956;T:1717788013;N:113576 150 150     1734112101 1468810954 1473411956 1717788013 113576 SRX18142168 SRS15643636 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9416 0.93939 0.07966 0.07909 0.73255 0.73259 0.52819 0.5255 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71942 71942 SRR22163301 SRX18142167 SRS15643635 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         CT2 1   Treatment:Treatment 1|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S1 2 1 S1 2 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S1_2_1.fq.gz S1_2_2.fq.gz fastq fastq 6555794700.0 21852649.0 S1 2 1.fq.gz 0:150 1:150 A:1772394034;C:1510456961;G:1510092541;T:1762790687;N:60477 150 150     1772394034 1510456961 1510092541 1762790687 60477 SRX18142167 SRS15643635 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94303 0.94265 0.0822 0.08118 0.73641 0.73665 0.52096 0.51558 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71943 71943 SRR22163302 SRX18142166 SRS15643634 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         SBM5 1   Treatment:Treatment 2|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S2 5 1 S2 5 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S2_5_1.fq.gz S2_5_2.fq.gz fastq fastq 6855107400.0 22850358.0 S2 5 1.fq.gz 0:150 1:150 A:1869970926;C:1565462968;G:1568115621;T:1851501680;N:56205 150 150     1869970926 1565462968 1568115621 1851501680 56205 SRX18142166 SRS15643634 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93659 0.93619 0.08228 0.08122 0.73302 0.73304 0.51953 0.52133 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71944 71944 SRR22163303 SRX18142165 SRS15643633 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         SBM4 1   Treatment:Treatment 2|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S2 4 1 S2 4 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S2_4_1.fq.gz S2_4_2.fq.gz fastq fastq 7044015900.0 23480053.0 S2 4 1.fq.gz 0:150 1:150 A:1899828828;C:1624907781;G:1630439306;T:1888776155;N:63830 150 150     1899828828 1624907781 1630439306 1888776155 63830 SRX18142165 SRS15643633 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94362 0.94382 0.07511 0.07509 0.72855 0.72837 0.52157 0.53136 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71945 71945 SRR22163304 SRX18142164 SRS15643632 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         SBM3 1   Treatment:Treatment 2|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S2 3 1 S2 3 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S2_3_1.fq.gz S2_3_2.fq.gz fastq fastq 6818571600.0 22728572.0 S2 3 1.fq.gz 0:150 1:150 A:1840865477;C:1571915962;G:1578863428;T:1826870329;N:56404 150 150     1840865477 1571915962 1578863428 1826870329 56404 SRX18142164 SRS15643632 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93784 0.93642 0.07873 0.07836 0.73054 0.73208 0.52416 0.52365 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71946 71946 SRR22163305 SRX18142163 SRS15643631 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         SBM2 1   Treatment:Treatment 2|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S2 2 1 S2 2 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S2_2_1.fq.gz S2_2_2.fq.gz fastq fastq 7034958300.0 23449861.0 S2 2 1.fq.gz 0:150 1:150 A:2003013392;C:1529525297;G:1530185534;T:1972122799;N:111278 150 150     2003013392 1529525297 1530185534 1972122799 111278 SRX18142163 SRS15643631 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.91586 0.91663 0.1084 0.10816 0.74136 0.74012 0.51769 0.51712 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71947 71947 SRR22163306 SRX18142162 SRS15643629 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         SBM1 1   Treatment:Treatment 2|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S2 1 1 S2 1 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S2_1_1.fq.gz S2_1_2.fq.gz fastq fastq 7116235200.0 23720784.0 S2 1 1.fq.gz 0:150 1:150 A:1941741566;C:1625435455;G:1623746373;T:1925246958;N:64848 150 150     1941741566 1625435455 1623746373 1925246958 64848 SRX18142162 SRS15643629 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9342 0.93247 0.08966 0.0896 0.73089 0.732 0.52389 0.52551 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
71948 71948 SRR22163307 SRX18142161 SRS15643630 SRP405971 PRJNA896758 Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation PRJNA896758 Other In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation         CT1 1   Treatment:Treatment 1|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish S1 1 1 S1 1 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP405971     S1_1_1.fq.gz S1_1_2.fq.gz fastq fastq 6578607600.0 21928692.0 S1 1 1.fq.gz 0:150 1:150 A:1766013280;C:1526325065;G:1530055427;T:1756153985;N:59843 150 150     1766013280 1526325065 1530055427 1756153985 59843 SRX18142161 SRS15643630 SRA1532106 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9403 0.94099 0.08209 0.08119 0.73318 0.73381 0.52125 0.52565 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2022-11-02 Adult Adult Gut Digestive System
74591 74591 SRR23867223 SRX19679372 SRS17048767 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA1 6 1   Treatment:Treatment 3|replicate:biological replicate 6|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D318 1 D318 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D318_1.fq.gz D318_2.fq.gz fastq fastq 6866366100.0 22887887.0 D318 1.fq.gz 0:150 1:150 A:1868273258;C:1552581651;G:1569852801;T:1875314099;N:344291 150 150     1868273258 1552581651 1569852801 1875314099 344291 SRX19679372 SRS17048767 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.8375 0.83915 0.07702 0.07767 0.76262 0.76171 0.54066 0.53237 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74592 74592 SRR23867224 SRX19679371 SRS17048768 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         CT 4 1   Treatment:Treatment 1|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D14 1 D14 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D14_1.fq.gz D14_2.fq.gz fastq fastq 6829713900.0 22765713.0 D14 1.fq.gz 0:150 1:150 A:1859107697;C:1557243925;G:1562047050;T:1850959070;N:356158 150 150     1859107697 1557243925 1562047050 1850959070 356158 SRX19679371 SRS17048768 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93803 0.93879 0.07869 0.07811 0.74886 0.74943 0.52061 0.52823 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74593 74593 SRR23867225 SRX19679370 SRS17048766 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         CT 5 1   Treatment:Treatment 1|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D15 1 D15 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D15_1.fq.gz D15_2.fq.gz fastq fastq 7344699300.0 24482331.0 D15 1.fq.gz 0:150 1:150 A:1984210963;C:1688711675;G:1691818297;T:1979605971;N:352394 150 150     1984210963 1688711675 1691818297 1979605971 352394 SRX19679370 SRS17048766 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9491 0.94978 0.06816 0.06844 0.76327 0.7629 0.54142 0.54595 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74594 74594 SRR23867226 SRX19679369 SRS17048765 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA2 5 1   Treatment:Treatment 4|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D424 1 D424 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D424_1.fq.gz D424_2.fq.gz fastq fastq 6498250200.0 21660834.0 D424 1.fq.gz 0:150 1:150 A:1772150272;C:1477815024;G:1484628595;T:1763345990;N:310319 150 150     1772150272 1477815024 1484628595 1763345990 310319 SRX19679369 SRS17048765 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94543 0.94641 0.07905 0.07823 0.74986 0.75035 0.53517 0.53233 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74595 74595 SRR23867227 SRX19679368 SRS17048764 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA2 4 1   Treatment:Treatment 4|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D423 1 D423 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D423_1.fq.gz D423_2.fq.gz fastq fastq 6273958500.0 20913195.0 D423 1.fq.gz 0:150 1:150 A:1673260340;C:1466412445;G:1466963414;T:1667050735;N:271566 150 150     1673260340 1466412445 1466963414 1667050735 271566 SRX19679368 SRS17048764 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.942 0.94352 0.05993 0.0599 0.77228 0.77195 0.52844 0.53232 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74596 74596 SRR23867228 SRX19679367 SRS17048763 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         CT 3 1   Treatment:Treatment 1|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D13 1 D13 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D13_1.fq.gz D13_2.fq.gz fastq fastq 5886724800.0 19622416.0 D13 1.fq.gz 0:150 1:150 A:1591250606;C:1352364793;G:1355607710;T:1587209533;N:292158 150 150     1591250606 1352364793 1355607710 1587209533 292158 SRX19679367 SRS17048763 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94661 0.94747 0.07525 0.07496 0.7516 0.75187 0.55084 0.55292 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74597 74597 SRR23867229 SRX19679366 SRS17048761 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA2 3 1   Treatment:Treatment 4|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D422 1 D422 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D422_1.fq.gz D422_2.fq.gz fastq fastq 6672249000.0 22240830.0 D422 1.fq.gz 0:150 1:150 A:1803863740;C:1534165789;G:1537751502;T:1796173017;N:294952 150 150     1803863740 1534165789 1537751502 1796173017 294952 SRX19679366 SRS17048761 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94265 0.94393 0.0721 0.072 0.74787 0.74748 0.51912 0.52899 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74598 74598 SRR23867230 SRX19679365 SRS17048762 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA2 2 1   Treatment:Treatment 4|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D421 1 D421 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D421_1.fq.gz D421_2.fq.gz fastq fastq 6643530600.0 22145102.0 D421 1.fq.gz 0:150 1:150 A:1795067619;C:1527765455;G:1532536649;T:1787835091;N:325786 150 150     1795067619 1527765455 1532536649 1787835091 325786 SRX19679365 SRS17048762 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.9474 0.94797 0.07071 0.07071 0.7615 0.76112 0.55795 0.56408 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74599 74599 SRR23867231 SRX19679364 SRS17048759 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA2 1 1   Treatment:Treatment 4|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D420 1 D420 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D420_1.fq.gz D420_2.fq.gz fastq fastq 7534605600.0 25115352.0 D420 1.fq.gz 0:150 1:150 A:2055326891;C:1715007378;G:1721655123;T:2042231399;N:384809 150 150     2055326891 1715007378 1721655123 2042231399 384809 SRX19679364 SRS17048759 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94402 0.94525 0.07551 0.07546 0.77019 0.76891 0.55363 0.54404 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74600 74600 SRR23867232 SRX19679363 SRS17048760 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HC 1 1   Treatment:Treatment 2|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D210 1 D210 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D210_1.fq.gz D210_2.fq.gz fastq fastq 6009183600.0 20030612.0 D210 1.fq.gz 0:150 1:150 A:1591733590;C:1412595860;G:1417943794;T:1586611809;N:298547 150 150     1591733590 1412595860 1417943794 1586611809 298547 SRX19679363 SRS17048760 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94637 0.94743 0.06815 0.06784 0.73714 0.73643 0.55226 0.55092 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74601 74601 SRR23867233 SRX19679362 SRS17048758 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HC 2 1   Treatment:Treatment 2|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D211 1 D211 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D211_1.fq.gz D211_2.fq.gz fastq fastq 6332032200.0 21106774.0 D211 1.fq.gz 0:150 1:150 A:1743782138;C:1425201935;G:1430924725;T:1731800503;N:322899 150 150     1743782138 1425201935 1430924725 1731800503 322899 SRX19679362 SRS17048758 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93226 0.93204 0.08016 0.08032 0.74324 0.74286 0.54021 0.5371 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74602 74602 SRR23867234 SRX19679361 SRS17048756 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HC 3 1   Treatment:Treatment 2|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D212 1 D212 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D212_1.fq.gz D212_2.fq.gz fastq fastq 6348259200.0 21160864.0 D212 1.fq.gz 0:150 1:150 A:1725202920;C:1454384150;G:1454829638;T:1713517835;N:324657 150 150     1725202920 1454384150 1454829638 1713517835 324657 SRX19679361 SRS17048756 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.90683 0.91203 0.07122 0.07122 0.74681 0.74661 0.5452 0.5347 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74603 74603 SRR23867235 SRX19679360 SRS17048757 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HC 4 1   Treatment:Treatment 2|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D27 1 D27 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D27_1.fq.gz D27_2.fq.gz fastq fastq 6398334000.0 21327780.0 D27 1.fq.gz 0:150 1:150 A:1735781862;C:1463993399;G:1469767825;T:1728586936;N:203978 150 150     1735781862 1463993399 1469767825 1728586936 203978 SRX19679360 SRS17048757 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94341 0.94389 0.07503 0.07443 0.7502 0.75053 0.50206 0.51826 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74604 74604 SRR23867236 SRX19679359 SRS17048755 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         CT 2 1   Treatment:Treatment 1|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D12 1 D12 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D12_1.fq.gz D12_2.fq.gz fastq fastq 6792043800.0 22640146.0 D12 1.fq.gz 0:150 1:150 A:1842267056;C:1557221159;G:1562987498;T:1829222983;N:345104 150 150     1842267056 1557221159 1562987498 1829222983 345104 SRX19679359 SRS17048755 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94703 0.94883 0.08027 0.08068 0.75205 0.75118 0.53661 0.53408 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74605 74605 SRR23867237 SRX19679358 SRS17048754 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HC 5 1   Treatment:Treatment 2|replicate:biological replicate 5|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D28 1 D28 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D28_1.fq.gz D28_2.fq.gz fastq fastq 6034195200.0 20113984.0 D28 1.fq.gz 0:150 1:150 A:1633707544;C:1381503281;G:1385828940;T:1632867136;N:288299 150 150     1633707544 1381503281 1385828940 1632867136 288299 SRX19679358 SRS17048754 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94075 0.94189 0.08432 0.08386 0.74568 0.7461 0.54138 0.5316 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74606 74606 SRR23867238 SRX19679357 SRS17048752 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA1 1 1   Treatment:Treatment 3|replicate:biological replicate 1|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D313 1 D313 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D313_1.fq.gz D313_2.fq.gz fastq fastq 6287166300.0 20957221.0 D313 1.fq.gz 0:150 1:150 A:1746859891;C:1401226868;G:1406295612;T:1732466299;N:317630 150 150     1746859891 1401226868 1406295612 1732466299 317630 SRX19679357 SRS17048752 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.93403 0.93589 0.08952 0.0893 0.76952 0.76814 0.55082 0.54827 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74607 74607 SRR23867239 SRX19679356 SRS17048753 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA1 2 1   Treatment:Treatment 3|replicate:biological replicate 2|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D314 1 D314 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D314_1.fq.gz D314_2.fq.gz fastq fastq 7196072400.0 23986908.0 D314 1.fq.gz 0:150 1:150 A:1797803744;C:1781437171;G:1817616095;T:1798859881;N:355509 150 150     1797803744 1781437171 1817616095 1798859881 355509 SRX19679356 SRS17048753 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.95856 0.95896 0.04023 0.03976 0.74894 0.74988 0.52261 0.521 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74608 74608 SRR23867240 SRX19679355 SRS17048751 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA1 4 1   Treatment:Treatment 3|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D316 1 D316 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D316_1.fq.gz D316_2.fq.gz fastq fastq 7957519800.0 26525066.0 D316 1.fq.gz 0:150 1:150 A:2164476065;C:1823746216;G:1822643914;T:2146284109;N:369496 150 150     2164476065 1823746216 1822643914 2146284109 369496 SRX19679355 SRS17048751 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.94034 0.94097 0.0789 0.07865 0.74085 0.74008 0.53971 0.52566 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System
74609 74609 SRR23867241 SRX19679354 SRS17048750 SRP427360 PRJNA944406 Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model PRJNA944406 Other We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet.         HCA1 3 1   Treatment:Treatment 3|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish D315 1 D315 1 PCR enrichment of adaptor ligated DNA     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000   SRP427360     D315_1.fq.gz D315_2.fq.gz fastq fastq 6876353100.0 22921177.0 D315 1.fq.gz 0:150 1:150 A:1833034469;C:1606227842;G:1613928073;T:1822843597;N:319119 150 150     1833034469 1606227842 1613928073 1822843597 319119 SRX19679354 SRS17048750 SRA1604081 Nord University|Faculty of Bioscience and Aquaculture Nord University 2 0.97864 0.97875 0.02219 0.02206 0.86908 0.86904 0.18385 0.17759 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   Norway 2023-03-17 Adult Adult Gut Digestive System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;