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118 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PCR" and tissue_curation_coarse = "Nervous System"

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devstage_curation 3

technology 2

experiment.library_source 2

devstage_curation_coarse 2

tissue_curation_coarse 1

  • Nervous System · 118 ✖

tissue_curation 1

experiment.platform 1

experiment.library_strategy 1

experiment.library_selection 1

  • PCR · 118 ✖

experiment.library_layout 1

  • PAIRED · 118 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
8076 8076 ERR2304209 ERX2355537 ERS2201745 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged mutant biorep3 SAMEA104590463 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12 9 psen1K97Gfshet 24mth 13 03 2014 S3 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz fastq fastq 9318039088.0 38360343.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12 0:121.17 1:121.74 A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148 121 121     2583644589 2091813317 2105322994 2536795040 463148 ERX2355537 ERS2201745 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.93003 0.92836 0.26254 0.26157 0.68992 0.69593 0.48246 0.48292 134 134 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8077 8077 ERR2304208 ERX2355536 ERS2201744 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged mutant biorep2 SAMEA104590462 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11 8 psen1K97Gfshet 24mth 13 03 2014 S2 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz fastq fastq 8559244581.0 35608377.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11 0:119.87 1:120.50 A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710 119 120     2397336730 1892236963 1910506310 2358778868 385710 ERX2355536 ERS2201744 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92422 0.92311 0.30514 0.30437 0.69578 0.7008 0.49054 0.48857 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8078 8078 ERR2304207 ERX2355535 ERS2201743 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged mutant biorep1 SAMEA104590461 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590461|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep1|common name:zebrafish|sample name:Aged mutant biorep1                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10 7 psen1K97Gfshet 24mth 13 03 2014 S1 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R1.fastq.gz 7_psen1K97Gfshet_24mth_13_03_2014_S1_fem_R2.fastq.gz fastq fastq 6521711648.0 27182062.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 10 0:119.65 1:120.27 A:1831722484;C:1434689482;G:1449266189;T:1805677755;N:355738 119 120     1831722484 1434689482 1449266189 1805677755 355738 ERX2355535 ERS2201743 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92564 0.92498 0.29344 0.29212 0.69327 0.69964 0.48557 0.48942 86 86 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8079 8079 ERR2304206 ERX2355534 ERS2201742 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged wild type biorep3 SAMEA104590460 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590460|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep3|common name:zebrafish|sample name:Aged wild type biorep3                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9 3 non mutant K97Gfs 24mth 13 03 2014 S3 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R1.fastq.gz 3_non_mutant_K97Gfs_24mth_13_03_2014_S3_fem_R2.fastq.gz fastq fastq 6865452019.0 28646225.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 9 0:119.50 1:120.16 A:1903309108;C:1535570672;G:1550661363;T:1875578941;N:331935 119 120     1903309108 1535570672 1550661363 1875578941 331935 ERX2355534 ERS2201742 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92997 0.92904 0.26949 0.26497 0.69485 0.70072 0.49378 0.50075 96 96 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8080 8080 ERR2304205 ERX2355533 ERS2201741 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged wild type biorep2 SAMEA104590459 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590459|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep2|common name:zebrafish|sample name:Aged wild type biorep2                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8 2 non mutant K97Gfs 24mth 13 03 2014 S2 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R1.fastq.gz 2_non_mutant_K97Gfs_24mth_13_03_2014_S2_fem_R2.fastq.gz fastq fastq 8418868343.0 34905186.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 8 0:120.29 1:120.91 A:2334515884;C:1885784857;G:1900432559;T:2297775998;N:359045 120 120     2334515884 1885784857 1900432559 2297775998 359045 ERX2355533 ERS2201741 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.93078 0.92967 0.25478 0.25365 0.69372 0.69938 0.4988 0.49709 132 132 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8081 8081 ERR2304204 ERX2355532 ERS2201740 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Aged wild type biorep1 SAMEA104590458 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590458|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged wild type biorep1|common name:zebrafish|sample name:Aged wild type biorep1                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7 1 non mutant K97Gfs 24mth 13 03 2014 S1 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R1.fastq.gz 1_non_mutant_K97Gfs_24mth_13_03_2014_S1_fem_R2.fastq.gz fastq fastq 6628468736.0 27477727.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 7 0:120.31 1:120.92 A:1839014115;C:1487750495;G:1497160978;T:1804205119;N:338029 120 120     1839014115 1487750495 1497160978 1804205119 338029 ERX2355532 ERS2201740 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92916 0.92783 0.28453 0.28375 0.69798 0.70289 0.48132 0.48227 125 125 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8082 8082 ERR2304203 ERX2355531 ERS2201739 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young mutant biorep3 SAMEA104590457 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590457|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep3|common name:zebrafish|sample name:Young mutant biorep3                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6 12 psen1K97Gfshet 6mth 10 03 2016 S3 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R1.fastq.gz 12_psen1K97Gfshet_6mth_10_03_2016_S3_fem_R2.fastq.gz fastq fastq 11485397100.0 38284657.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 6 0:150 1:150 A:3206707597;C:2539306860;G:2721427816;T:3015264084;N:2690743 150 150     3206707597 2539306860 2721427816 3015264084 2690743 ERX2355531 ERS2201739 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92853 0.92813 0.26757 0.26433 0.68487 0.68903 0.47708 0.47074 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8083 8083 ERR2304202 ERX2355530 ERS2201738 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young mutant biorep2 SAMEA104590456 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590456|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep2|common name:zebrafish|sample name:Young mutant biorep2                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5 11 psen1K97Gfshet 6mth 10 03 2016 S2 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R1.fastq.gz 11_psen1K97Gfshet_6mth_10_03_2016_S2_fem_R2.fastq.gz fastq fastq 13258122000.0 44193740.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 5 0:150 1:150 A:3781076311;C:2868334319;G:3063279426;T:3542309854;N:3122090 150 150     3781076311 2868334319 3063279426 3542309854 3122090 ERX2355530 ERS2201738 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.91552 0.91659 0.32337 0.32168 0.69546 0.698 0.4697 0.47295 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8084 8084 ERR2304201 ERX2355529 ERS2201737 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young mutant biorep1 SAMEA104590455 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4 10 psen1K97Gfshet 6mth 10 03 2016 S1 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz fastq fastq 11724649800.0 39082166.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4 0:150 1:150 A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083 150 150     3304100658 2560616667 2779636286 3077545106 2751083 ERX2355529 ERS2201737 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.92121 0.91893 0.28263 0.27928 0.69073 0.6953 0.47174 0.46157 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8085 8085 ERR2304200 ERX2355528 ERS2201736 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young wild type biorep3 SAMEA104590454 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590454|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep3|common name:zebrafish|sample name:Young wild type biorep3                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3 6 non mutant K97Gfs 6mth 10 03 2016 S3 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R1.fastq.gz 6_non_mutant_K97Gfs_6mth_10_03_2016_S3_fem_R2.fastq.gz fastq fastq 24923212200.0 83077374.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 3 0:150 1:150 A:7077378299;C:5398402396;G:5838059014;T:6604505033;N:4867458 150 150     7077378299 5398402396 5838059014 6604505033 4867458 ERX2355528 ERS2201736 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.91973 0.92144 0.29148 0.29015 0.69587 0.69994 0.46145 0.47047 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8086 8086 ERR2304199 ERX2355527 ERS2201735 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young wild type biorep2 SAMEA104590453 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590453|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep2|common name:zebrafish|sample name:Young wild type biorep2                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2 5 non mutant K97Gfs 6mth 10 03 2016 S2 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R1.fastq.gz 5_non_mutant_K97Gfs_6mth_10_03_2016_S2_fem_R2.fastq.gz fastq fastq 7840317153.0 39006553.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 2 0:101 1:100 A:2200490653;C:1718458832;G:1730278863;T:2188900320;N:2188485 101 100     2200490653 1718458832 1730278863 2188900320 2188485 ERX2355527 ERS2201735 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.91783 0.91983 0.32092 0.32105 0.67714 0.67691 0.47312 0.47481 101 100 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
8087 8087 ERR2304198 ERX2355526 ERS2201734 ERP106721 PRJEB24858 Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 Other RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08     Young wild type biorep1 SAMEA104590452 Adelaide Bioinformatics Hub ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1                 NextSeq 500 paired end sequencing ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1 4 non mutant K97Gfs 6mth 10 03 2016 S1 fem RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol.   RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   ERP106721 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz fastq fastq 13910901600.0 46369672.0 ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1 0:150 1:150 A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629 150 150     3994738757 2957179645 3191379676 3764325893 3277629 ERX2355526 ERS2201734 ERA1210082 Adelaide Bioinformatics Hub|European Nucleotide Archive Adelaide Bioinformatics Hub 2 0.91399 0.9166 0.3202 0.31818 0.6942 0.698 0.46902 0.47111 150 150 B B biological fallback assumption illumina nextseq unknown random_priming unknown bulk unknown unknown   Australia 2018-02-08 Undetermined Adult Brain Nervous System
35992 35992 SRR33967648 SRX29166369 SRS25367088 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M50 5   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M50 5 M50 5 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M50_5_1.fq.gz M50_5_2.fq.gz fastq fastq 5682275100.0 18940917.0 M50 5 1.fq.gz 0:150 1:150 A:1475455936;C:1352416727;G:1390067010;T:1463846184;N:489243 150 150     1475455936 1352416727 1390067010 1463846184 489243 SRX29166369 SRS25367088 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35993 35993 SRR33967649 SRX29166368 SRS25367085 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M50 4   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M50 4 M50 4 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M50_4_1.fq.gz M50_4_2.fq.gz fastq fastq 6862983600.0 22876612.0 M50 4 1.fq.gz 0:150 1:150 A:1826390013;C:1586928364;G:1633332758;T:1815810150;N:522315 150 150     1826390013 1586928364 1633332758 1815810150 522315 SRX29166368 SRS25367085 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35994 35994 SRR33967650 SRX29166367 SRS25367086 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M50 3   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M50 3 M50 3 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M50_3_1.fq.gz M50_3_2.fq.gz fastq fastq 5489986200.0 18299954.0 M50 3 1.fq.gz 0:150 1:150 A:1414309279;C:1315802474;G:1358108216;T:1401292283;N:473948 150 150     1414309279 1315802474 1358108216 1401292283 473948 SRX29166367 SRS25367086 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35995 35995 SRR33967651 SRX29166366 SRS25367084 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M50 2   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M50 2 M50 2 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M50_2_1.fq.gz M50_2_2.fq.gz fastq fastq 6673397100.0 22244657.0 M50 2 1.fq.gz 0:150 1:150 A:1750486905;C:1567228841;G:1614796130;T:1740308412;N:576812 150 150     1750486905 1567228841 1614796130 1740308412 576812 SRX29166366 SRS25367084 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35996 35996 SRR33967652 SRX29166365 SRS25367083 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M50 1   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.05 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M50 1 M50 1 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M50_1_1.fq.gz M50_1_2.fq.gz fastq fastq 6508024200.0 21693414.0 M50 1 1.fq.gz 0:150 1:150 A:1715300095;C:1523089880;G:1569687900;T:1699384578;N:561747 150 150     1715300095 1523089880 1569687900 1699384578 561747 SRX29166365 SRS25367083 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35997 35997 SRR33967653 SRX29166364 SRS25367082 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         Control 5   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Control 5 Control 5 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     Control_5_1.fq.gz Control_5_2.fq.gz fastq fastq 6336767400.0 21122558.0 Control 5 1.fq.gz 0:150 1:150 A:1722716287;C:1433692752;G:1463159195;T:1714640659;N:2558507 150 150     1722716287 1433692752 1463159195 1714640659 2558507 SRX29166364 SRS25367082 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35998 35998 SRR33967654 SRX29166363 SRS25367081 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         Control 4   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Control 4 Control 4 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     Control_4_1.fq.gz Control_4_2.fq.gz fastq fastq 7139217600.0 23797392.0 Control 4 1.fq.gz 0:150 1:150 A:1925914867;C:1636066941;G:1659441863;T:1917461225;N:332704 150 150     1925914867 1636066941 1659441863 1917461225 332704 SRX29166363 SRS25367081 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
35999 35999 SRR33967655 SRX29166362 SRS25367080 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         Control 3   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Control 3 Control 3 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     Control_3_1.fq.gz Control_3_2.fq.gz fastq fastq 6882216000.0 22940720.0 Control 3 1.fq.gz 0:150 1:150 A:1838845535;C:1585015974;G:1626971386;T:1830054397;N:1328708 150 150     1838845535 1585015974 1626971386 1830054397 1328708 SRX29166362 SRS25367080 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36000 36000 SRR33967656 SRX29166361 SRS25367078 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M200 5   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M200 5 M200 5 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M200_5_1.fq.gz M200_5_2.fq.gz fastq fastq 5990708400.0 19969028.0 M200 5 1.fq.gz 0:150 1:150 A:1562208536;C:1423005356;G:1454129452;T:1550849377;N:515679 150 150     1562208536 1423005356 1454129452 1550849377 515679 SRX29166361 SRS25367078 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36001 36001 SRR33967657 SRX29166360 SRS25367079 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M200 4   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M200 4 M200 4 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M200_4_1.fq.gz M200_4_2.fq.gz fastq fastq 7171017600.0 23903392.0 M200 4 1.fq.gz 0:150 1:150 A:1895689921;C:1679415609;G:1716680481;T:1878753538;N:478051 150 150     1895689921 1679415609 1716680481 1878753538 478051 SRX29166360 SRS25367079 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36002 36002 SRR33967658 SRX29166359 SRS25367077 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M200 3   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M200 3 M200 3 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M200_3_1.fq.gz M200_3_2.fq.gz fastq fastq 7072172700.0 23573909.0 M200 3 1.fq.gz 0:150 1:150 A:1846647695;C:1670426404;G:1759285280;T:1795198866;N:614455 150 150     1846647695 1670426404 1759285280 1795198866 614455 SRX29166359 SRS25367077 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B mate2-mate1 similar by mapping diff illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36003 36003 SRR33967659 SRX29166358 SRS25367076 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M200 2   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M200 2 M200 2 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M200_2_1.fq.gz M200_2_2.fq.gz fastq fastq 6922326900.0 23074423.0 M200 2 1.fq.gz 0:150 1:150 A:1833168494;C:1615473106;G:1653278971;T:1819792205;N:614124 150 150     1833168494 1615473106 1653278971 1819792205 614124 SRX29166358 SRS25367076 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36004 36004 SRR33967660 SRX29166357 SRS25367075 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         M200 1   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:0.20 mg/L Methomyl exposure|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish M200 1 M200 1 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     M200_1_1.fq.gz M200_1_2.fq.gz fastq fastq 7116870600.0 23722902.0 M200 1 1.fq.gz 0:150 1:150 A:1884779262;C:1661148284;G:1695046505;T:1873189454;N:2707095 150 150     1884779262 1661148284 1695046505 1873189454 2707095 SRX29166357 SRS25367075 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36005 36005 SRR33967661 SRX29166356 SRS25367074 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         Control 2   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Control 2 Control 2 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     Control_2_1.fq.gz Control_2_2.fq.gz fastq fastq 6484371600.0 21614572.0 Control 2 1.fq.gz 0:150 1:150 A:1719589818;C:1509764847;G:1540256063;T:1713514139;N:1246733 150 150     1719589818 1509764847 1540256063 1713514139 1246733 SRX29166356 SRS25367074 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
36006 36006 SRR33967662 SRX29166355 SRS25367073 SRP591856 PRJNA1256832 Danio rerio Raw sequence reads PRJNA1256832 Whole Genome Sequencing Effects of subchronic exposure to environmentally relevant concentrations of methomyl solution on the gene expression levels in the brain tissue of zebrafish         Control 1   ecotype:Wuxi|dev stage:adult|collection date:2023 11 10|geo loc name:China: Wuxi|sex:not collected|tissue:Brain|treatment:Control|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish Control 1 Control 1 Normal RNA seq of Brain     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP591856     Control_1_1.fq.gz Control_1_2.fq.gz fastq fastq 6782206800.0 22607356.0 Control 1 1.fq.gz 0:150 1:150 A:1814302219;C:1560333202;G:1602725364;T:1804365566;N:480449 150 150     1814302219 1560333202 1602725364 1804365566 480449 SRX29166355 SRS25367073 SRA2148393 Nanjing Agriculture University|Wuxi Fishery College Nanjing Agriculture University                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-06-13 Adult Adult Brain Nervous System
55677 55677 SRR10728571 SRX7404696 SRS5852273 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       KO 3 ORUCHN12456   strain:AB|isolate:Brain 3.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S61 AHKYT7DSXX S61 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S061_gooalgene-aabrain3_AHKYT7DSXX_S61_L001_001_1.fastq S061_gooalgene-aabrain3_AHKYT7DSXX_S61_L001_001_2.fastq fastq fastq 6085815300.0 20286051.0 S061 gooalgene aabrain3 AHKYT7DSXX S61 L001 001 1.fastq 0:150 1:150 A:1724932230;C:1317473973;G:1374151780;T:1669206179;N:51138 150 150     1724932230 1317473973 1374151780 1669206179 51138 SRX7404696 SRS5852273 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.9231 0.91987 0.17106 0.17073 0.70234 0.70601 0.48521 0.48535 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
55678 55678 SRR10728572 SRX7404695 SRS5852274 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       KO 2 ORUCHN12455   strain:AB|isolate:Brain 3.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S60 AHKYT7DSXX S60 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_1.fastq S060_gooalgene-aabrain2_AHKYT7DSXX_S60_L001_001_2.fastq fastq fastq 6412146000.0 21373820.0 S060 gooalgene aabrain2 AHKYT7DSXX S60 L001 001 1.fastq 0:150 1:150 A:1818102509;C:1381306760;G:1470846044;T:1741841406;N:49281 150 150     1818102509 1381306760 1470846044 1741841406 49281 SRX7404695 SRS5852274 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.92216 0.91649 0.16734 0.16488 0.70256 0.70713 0.48061 0.48416 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
55679 55679 SRR10728573 SRX7404694 SRS5852272 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       KO 1 ORUCHN12454   strain:AB|isolate:Brain 2.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S59 AHKYT7DSXX S59 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S059_gooalgene-aabrain1_AHKYT7DSXX_S59_L001_001_1.fastq S059_gooalgene-aabrain1_AHKYT7DSXX_S59_L001_001_2.fastq fastq fastq 6234932700.0 20783109.0 S059 gooalgene aabrain1 AHKYT7DSXX S59 L001 001 1.fastq 0:150 1:150 A:1778445403;C:1340616220;G:1412409199;T:1703411736;N:50142 150 150     1778445403 1340616220 1412409199 1703411736 50142 SRX7404694 SRS5852272 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.92052 0.91571 0.16657 0.1645 0.70035 0.70449 0.48728 0.48687 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
55680 55680 SRR10728574 SRX7404693 SRS5852271 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       WT 3 ORUCHN12453   strain:AB|isolate:Brain 2.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S58 AHKYT7DSXX S58 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S058_gooalgene-AAbrain3_AHKYT7DSXX_S58_L001_001_1.fastq S058_gooalgene-AAbrain3_AHKYT7DSXX_S58_L001_001_2.fastq fastq fastq 6021783600.0 20072612.0 S058 gooalgene AAbrain3 AHKYT7DSXX S58 L001 001 1.fastq 0:150 1:150 A:1694325953;C:1315433478;G:1376982980;T:1634993656;N:47533 150 150     1694325953 1315433478 1376982980 1634993656 47533 SRX7404693 SRS5852271 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.92316 0.9198 0.15697 0.15577 0.70368 0.70745 0.48523 0.4837 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
55681 55681 SRR10728575 SRX7404692 SRS5852270 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       WT 2 ORUCHN12452   strain:AB|isolate:Brain 1.2|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S57 AHKYT7DSXX S57 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S057_gooalgene-AAbrain2_AHKYT7DSXX_S57_L001_001_1.fastq S057_gooalgene-AAbrain2_AHKYT7DSXX_S57_L001_001_2.fastq fastq fastq 6265927200.0 20886424.0 S057 gooalgene AAbrain2 AHKYT7DSXX S57 L001 001 1.fastq 0:150 1:150 A:1766620690;C:1365008978;G:1424887257;T:1709358692;N:51583 150 150     1766620690 1365008978 1424887257 1709358692 51583 SRX7404692 SRS5852270 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.92321 0.92013 0.16 0.15891 0.70074 0.70421 0.48911 0.4851 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
55682 55682 SRR10728576 SRX7404691 SRS5852269 SRP238052 PRJNA596441 Brain sex Differentiation PRJNA596441 Other Brain sex differentiation       WT 1 ORUCHN12451   strain:AB|isolate:Brain 1.1|breed:animals|cultivar:zebrafish|ecotype:China|age:3.5 month|dev stage:Adult|sex:male|tissue:brain|BioSampleModel:Model organism or animal                 Wild type brain AHKYT7DSXX S56 AHKYT7DSXX S56 RNA cDNA fragmentation sequencing     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP238052     S056_gooalgene-AAbrain1_AHKYT7DSXX_S56_L001_001_2.fastq S056_gooalgene-AAbrain1_AHKYT7DSXX_S56_L001_001_1.fastq fastq fastq 5988733500.0 19962445.0 S056 gooalgene AAbrain1 AHKYT7DSXX S56 L001 001 1.fastq 0:150 1:150 A:1674537073;C:1315886701;G:1375949825;T:1622311719;N:48182 150 150     1674537073 1315886701 1375949825 1622311719 48182 SRX7404691 SRS5852269 SRA1013773 orebro University|School of Science and Technology orebro University 2 0.92322 0.91988 0.15291 0.15167 0.69503 0.69812 0.47679 0.48577 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   Sweden 2019-12-18 Adult Adult Brain Nervous System
59293 59293 SRR11814645 SRX8365674 SRS6681530 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         OC 1   strain:AB|age:1 year|sex:not applicable|tissue:Optic tectum|health state:Uninfected|treatment:Optic tectum uninfected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain OC 1 OC 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     OC_2.fq.gz OC_1.fq.gz fastq fastq 6787281600.0 22624272.0 OC 1.fq.gz 0:150 1:150 A:1951938141;C:1461285021;G:1461034248;T:1913015244;N:8946 150 150     1951938141 1461285021 1461034248 1913015244 8946 SRX8365674 SRS6681530 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.92226 0.92477 0.11882 0.11909 0.7329 0.73304 0.53542 0.53542 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59294 59294 SRR11814646 SRX8365673 SRS6681529 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         HI 1   strain:AB|age:1 year|sex:not applicable|tissue:Hypothalamus|health state:Infected|treatment:Hypothalamus infected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain HI 1 HI 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     HI_1.fq.gz HI_2.fq.gz fastq fastq 6002017500.0 20006725.0 HI 1.fq.gz 0:150 1:150 A:1667184319;C:1340786083;G:1351603192;T:1642337018;N:106888 150 150     1667184319 1340786083 1351603192 1642337018 106888 SRX8365673 SRS6681529 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.91922 0.9196 0.10248 0.10247 0.71603 0.71622 0.5257 0.51323 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59295 59295 SRR11814647 SRX8365672 SRS6681528 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         HC 1   strain:AB|age:1 year|sex:not applicable|tissue:Hypothalamus|health state:Uninfected|treatment:Hypothalamus uninfected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain HC 1 HC 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     HC_2.fq.gz HC_1.fq.gz fastq fastq 6697932000.0 22326440.0 HC 1.fq.gz 0:150 1:150 A:1863509966;C:1494301312;G:1506998035;T:1832987995;N:134692 150 150     1863509966 1494301312 1506998035 1832987995 134692 SRX8365672 SRS6681528 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.90392 0.90614 0.09797 0.09784 0.72689 0.72683 0.54762 0.54667 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59296 59296 SRR11814648 SRX8365671 SRS6681527 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         BI 1   strain:AB|age:1 year|sex:not applicable|tissue:Brain stem|health state:Infected|treatment:Brain stem infected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain BI 1 BI 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     BI_2.fq.gz BI_1.fq.gz fastq fastq 7100319000.0 23667730.0 BI 1.fq.gz 0:150 1:150 A:2001207205;C:1560833611;G:1572830593;T:1965318929;N:128662 150 150     2001207205 1560833611 1572830593 1965318929 128662 SRX8365671 SRS6681527 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.916 0.91719 0.10807 0.10739 0.7153 0.71437 0.5157 0.51352 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59297 59297 SRR11814649 SRX8365670 SRS6681526 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         TI 1   strain:AB|age:1 year|sex:not applicable|tissue:Telencephalon|health state:Infected|treatment:Telencephalon infected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain TI 1 TI 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     TI_1.fq.gz TI_2.fq.gz fastq fastq 6264203400.0 20880678.0 TI 1.fq.gz 0:150 1:150 A:1795775798;C:1354935409;G:1353906426;T:1759577228;N:8539 150 150     1795775798 1354935409 1353906426 1759577228 8539 SRX8365670 SRS6681526 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.9247 0.92682 0.1181 0.11788 0.73576 0.73557 0.53311 0.53194 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59298 59298 SRR11814650 SRX8365669 SRS6681525 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         TC 1   strain:AB|age:1 year|sex:not applicable|tissue:Telencephalon|health state:Uninfected|treatment:Telencephalon uninfected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain TC 1 TC 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     TC_2.fq.gz TC_1.fq.gz fastq fastq 6476121300.0 21587071.0 TC 1.fq.gz 0:150 1:150 A:1853595578;C:1402385797;G:1405275145;T:1814855867;N:8913 150 150     1853595578 1402385797 1405275145 1814855867 8913 SRX8365669 SRS6681525 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.9211 0.92365 0.11192 0.11165 0.72981 0.72922 0.53312 0.53459 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59299 59299 SRR11814651 SRX8365668 SRS6681524 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         OI 1   strain:AB|age:1 year|sex:not applicable|tissue:Optic tectum|health state:Infected|treatment:Optic tectum infected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain OI 1 OI 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     OI_1.fq.gz OI_2.fq.gz fastq fastq 6807639300.0 22692131.0 OI 1.fq.gz 0:150 1:150 A:1901077790;C:1512383812;G:1522750763;T:1871304667;N:122268 150 150     1901077790 1512383812 1522750763 1871304667 122268 SRX8365668 SRS6681524 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.92096 0.9223 0.10816 0.10876 0.71514 0.71494 0.53997 0.54072 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
59300 59300 SRR11814652 SRX8365667 SRS6681523 SRP262372 PRJNA633905 Effects of Pseudoloma neurophilia infection on the brain transcriptome in zebrafish Danio rerio PRJNA633905 Other Zebrafish Danio rerio have become an increasingly important animal model in biomedical research over the last few centuries. Unfortuntaley the brain infecting microsporidian parasite Pseudoloma neurophilia has been detected in approximately 70% of all zebrafish facilities examined through the Zebrafish International Resource Centre ZIRC. Pseudoloma neurophilia can infects the zebrafish either horizontally or vertically making it difficult to get rid of when first found in a population. The clinical disease caused by the parasite includes skeletal deformities lethargy and emaciation however most infections are subclinical. The impact caused on zebrafish by subclinical infections have not been very well studied and such infections can possibly create unwanted bias results. By studying the behavior neurochemistry respirometry and genetics we will try to understand possible implications of P. neurophilia in zebrafish.         BC 1   strain:AB|age:1 year|sex:not applicable|tissue:Brain stem|health state:Uninfected|treatment:Brain stem uninfected 1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain BC 1 BC 1 mRNA extracted with oligodT magnetic beads. cDNA synthesized with M MuLV reverse transcriptase. Complementary strands were synthesized by nick translation.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP262372     BC_1.fq.gz BC_2.fq.gz fastq fastq 6526344600.0 21754482.0 BC 1.fq.gz 0:150 1:150 A:1838952986;C:1435206004;G:1446578320;T:1805489595;N:117695 150 150     1838952986 1435206004 1446578320 1805489595 117695 SRX8365667 SRS6681523 SRA1077155 Norwegian University of Life Sciences|Nutrition Norwegian University of Life Sciences 2 0.91429 0.91584 0.10822 0.10786 0.71725 0.71685 0.51793 0.51793 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   Norway 2020-05-19 Adult Adult Brain Nervous System
60842 60842 SRR12569149 SRX9057254 SRS7306637 SRP279716 PRJNA660936 neuron RNA sequence PRJNA660936 Other exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron         hg cq55 4   strain:not applicable|isolate:replicate hg cq55 3 isolate|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 neuron RNA sequence hg cq55 4 hg cq55 4 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279716     mut2_3dpf_huC_GFP_R2.fq.gz mut2_3dpf_huC_GFP_R1.fq.gz fastq fastq 5553754600.0 27768773.0 mut2 3dpf huC GFP R1.fq.gz 0:100 1:100 A:1742480175;C:1080961705;G:1069343239;T:1658240146;N:2729335 100 100     1742480175 1080961705 1069343239 1658240146 2729335 SRX9057254 SRS7306637 SRA1120054 southwest university|College of Life Science southwest university 2 0.84455 0.83818 0.35011 0.34678 0.80077 0.80495 0.53816 0.52895 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-02 Larval Larval Brain Nervous System
60843 60843 SRR12569150 SRX9057253 SRS7306636 SRP279716 PRJNA660936 neuron RNA sequence PRJNA660936 Other exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron         hg cq55 3   strain:not applicable|isolate:neuron cells from cq55 zebrafish brain|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 neuron RNA sequence hg cq55 3 hg cq55 3 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279716     mut1_3dpf_huC_GFP_R1.fq.gz mut1_3dpf_huC_GFP_R2.fq.gz fastq fastq 5327979250.0 21311917.0 mut1 3dpf huC GFP R1.fq.gz 0:125 1:125 A:1718961802;C:967989219;G:966412948;T:1674354049;N:261232 125 125     1718961802 967989219 966412948 1674354049 261232 SRX9057253 SRS7306636 SRA1120054 southwest university|College of Life Science southwest university 2 0.86362 0.86453 0.37415 0.37612 0.80101 0.80277 0.54685 0.54842 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-02 Larval Larval Brain Nervous System
60844 60844 SRR12569151 SRX9057252 SRS7306635 SRP279716 PRJNA660936 neuron RNA sequence PRJNA660936 Other exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron         hg wt 2   strain:not applicable|isolate:replicate hg wt 1 isolate|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 neuron RNA sequence hg wt 2 hg wt 2 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279716     wt2_3dpf_huC_GFP_R1.fq.gz wt2_3dpf_huC_GFP_R2.fq.gz fastq fastq 5068139400.0 25340697.0 wt2 3dpf huC GFP R1.fq.gz 0:100 1:100 A:1567712110;C:989575944;G:973087045;T:1535828354;N:1935947 100 100     1567712110 989575944 973087045 1535828354 1935947 SRX9057252 SRS7306635 SRA1120054 southwest university|College of Life Science southwest university 2 0.89709 0.88454 0.31576 0.30572 0.77632 0.7781 0.50444 0.53198 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-02 Larval Larval Brain Nervous System
60845 60845 SRR12569152 SRX9057251 SRS7306634 SRP279716 PRJNA660936 neuron RNA sequence PRJNA660936 Other exploring the transcriptome difference of wt and V10 mutant zebrafish brain neuron         hg wt 1   strain:not applicable|isolate:neuron cells from wt zebrafish brain|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 neuron RNA sequence hg wt 1 hg wt 1 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279716     wt1_3dpf_huC_GFP_R1.fq.gz wt1_3dpf_huC_GFP_R2.fq.gz fastq fastq 5019434250.0 20077737.0 wt1 3dpf huC GFP R1.fq.gz 0:125 1:125 A:1570719296;C:963411212;G:958623651;T:1526437632;N:242459 125 125     1570719296 963411212 958623651 1526437632 242459 SRX9057251 SRS7306634 SRA1120054 southwest university|College of Life Science southwest university 2 0.9154 0.9156 0.3181 0.31852 0.77658 0.77697 0.51483 0.51799 125 125 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-02 Larval Larval Brain Nervous System
60846 60846 SRR12578018 SRX9064899 SRS7314059 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         mut ck 3   strain:not applicable|isolate:mut ck 1 rep3|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence mut ck 3 mut ck 3 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     mut3-cK_R1.fq.gz mut3-cK_R2.fq.gz fastq fastq 4760165600.0 23800828.0 mut3 cK R1.fq.gz 0:100 1:100 A:1364510425;C:1045107670;G:1037215034;T:1311220297;N:2112174 100 100     1364510425 1045107670 1037215034 1311220297 2112174 SRX9064899 SRS7314059 SRA1120726 southwest university|College of Life Science southwest university 2 0.92354 0.92226 0.1264 0.1289 0.85078 0.85054 0.56126 0.54753 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60847 60847 SRR12578019 SRX9064898 SRS7314058 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         mut ck 2   strain:not applicable|isolate:mut ck 1 rep2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence mut ck 2 mut ck 2 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     mut2-cK_R1.fq.gz mut2-cK_R2.fq.gz fastq fastq 4947468000.0 24737340.0 mut2 cK R1.fq.gz 0:100 1:100 A:1432233150;C:1077046875;G:1065275053;T:1371437084;N:1475838 100 100     1432233150 1077046875 1065275053 1371437084 1475838 SRX9064898 SRS7314058 SRA1120726 southwest university|College of Life Science southwest university 2 0.875 0.87333 0.29106 0.29734 0.90287 0.90272 0.6533 0.65064 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60848 60848 SRR12578020 SRX9064897 SRS7314057 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         mut ck 1   strain:not applicable|isolate:photo converted red coro1a Kaede+ microglia were islated from mut zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence mut ck 1 mut ck 1 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     mut1-cK_R1.fq.gz mut1-cK_R2.fq.gz fastq fastq 4583500600.0 22917503.0 mut1 cK R1.fq.gz 0:100 1:100 A:1287013718;C:1036294088;G:1027392742;T:1230916656;N:1883396 100 100     1287013718 1036294088 1027392742 1230916656 1883396 SRX9064897 SRS7314057 SRA1120726 southwest university|College of Life Science southwest university 2 0.93123 0.93277 0.0796 0.08122 0.85616 0.85608 0.56879 0.56531 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60849 60849 SRR12578021 SRX9064896 SRS7314056 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         sib ck 4   strain:not applicable|isolate:sib ck 2 rep3|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence sib ck 4 sib ck 4 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     sib4-cK_R1.fq.gz sib4-cK_R2.fq.gz fastq fastq 5158936200.0 25794681.0 sib4 cK R1.fq.gz 0:100 1:100 A:1468168955;C:1154667548;G:1140371695;T:1394217229;N:1510773 100 100     1468168955 1154667548 1140371695 1394217229 1510773 SRX9064896 SRS7314056 SRA1120726 southwest university|College of Life Science southwest university 2 0.90861 0.90861 0.10878 0.1109 0.8718 0.87217 0.59714 0.45964 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60850 60850 SRR12578022 SRX9064895 SRS7314055 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         sib ck 3   strain:not applicable|isolate:sib ck 2 rep2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence sib ck 3 sib ck 3 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     sib3-cK_R1.fq.gz sib3-cK_R2.fq.gz fastq fastq 5423170800.0 27115854.0 sib3 cK R1.fq.gz 0:100 1:100 A:1572102733;C:1186819728;G:1171432686;T:1491096414;N:1719239 100 100     1572102733 1186819728 1171432686 1491096414 1719239 SRX9064895 SRS7314055 SRA1120726 southwest university|College of Life Science southwest university 2 0.92496 0.92715 0.13376 0.13838 0.849 0.85074 0.60089 0.60102 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60851 60851 SRR12578023 SRX9064894 SRS7314054 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         sib ck 2   strain:not applicable|isolate:photo converted red coro1a Kaede+ ameoboid microglia were islated from wt zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence sib ck 2 sib ck 2 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     sib2-cK_R1.fq.gz sib2-cK_R2.fq.gz fastq fastq 4571697200.0 22858486.0 sib2 cK R1.fq.gz 0:100 1:100 A:1314307708;C:999308976;G:994304628;T:1262438024;N:1337864 100 100     1314307708 999308976 994304628 1262438024 1337864 SRX9064894 SRS7314054 SRA1120726 southwest university|College of Life Science southwest university 2 0.9285 0.92891 0.11144 0.11403 0.85577 0.85508 0.58643 0.58728 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
60852 60852 SRR12578024 SRX9064893 SRS7314053 SRP279884 PRJNA661142 microglia RNA sequence PRJNA661142 Other we did this RNA seq with coro1a kaede+ microglia in zebrafish brain to detect wheather V10 mutation could afftect microglia signature genes expression         sib ck 1   strain:not applicable|isolate:photo converted red coro1a Kaede+ thin and long microglia were islated from wt zebrafish brain via Flow|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3dpf|dev stage:not collected|sex:not collected|tissue:brain|BioSampleModel:Model organism or animal                 microglia RNA sequence sib ck 1 sib ck 1 Flow     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP279884     sib1-cK_R1.fq.gz sib1-cK_R2.fq.gz fastq fastq 4703567600.0 23517838.0 sib1 cK R1.fq.gz 0:100 1:100 A:1368380569;C:1010236864;G:1000479487;T:1322875631;N:1595049 100 100     1368380569 1010236864 1000479487 1322875631 1595049 SRX9064893 SRS7314053 SRA1120726 southwest university|College of Life Science southwest university 2 0.90076 0.90285 0.23584 0.24092 0.85123 0.85052 0.48965 0.49164 100 100 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2020-09-03 Larval Larval Brain Nervous System
61523 61523 SRR12858253 SRX9325184 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 2 S6 3Day 2 S6 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_2_S6_L004_R1_001.fastq.gz 3Day_2_S6_L004_R2_001.fastq.gz fastq fastq 76033651818.0 251767059.0 3Day 2 S6 L004 R1 001.fastq.gz 0:151 1:151 A:35535267340;C:11863415027;G:11773502422;T:16858157612;N:3309417 151 151     35535267340 11863415027 11773502422 16858157612 3309417 SRX9325184 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86148 0.0 0.22304 1.0 0.7582   0.53846 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61524 61524 SRR12858254 SRX9325183 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 1 S5 3Day 1 S5 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_1_S5_L004_R1_001.fastq.gz 3Day_1_S5_L004_R2_001.fastq.gz fastq fastq 59092751626.0 195671363.0 3Day 1 S5 L004 R1 001.fastq.gz 0:151 1:151 A:27630588655;C:9241106126;G:9168471456;T:13050007147;N:2578242 151 151     27630588655 9241106126 9168471456 13050007147 2578242 SRX9325183 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86271 0.0 0.22343 1.0 0.76023   0.54977 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61525 61525 SRR12858255 SRX9325182 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 4 S12 3Hour 4 S12 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_4_S12_L004_R1_001.fastq.gz 3Hour_4_S12_L004_R2_001.fastq.gz fastq fastq 72128136780.0 238834890.0 3Hour 4 S12 L004 R1 001.fastq.gz 0:151 1:151 A:33932689920;C:11046769968;G:10941298685;T:16204223580;N:3154627 151 151     33932689920 11046769968 10941298685 16204223580 3154627 SRX9325182 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84197 0.0 0.22466 1.0 0.78441   0.56868 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61526 61526 SRR12858256 SRX9325181 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 3 S11 3Hour 3 S11 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_3_S11_L004_R1_001.fastq.gz 3Hour_3_S11_L004_R2_001.fastq.gz fastq fastq 80705527190.0 267236845.0 3Hour 3 S11 L004 R1 001.fastq.gz 0:151 1:151 A:37985436560;C:12358793423;G:12237346212;T:18120396893;N:3554102 151 151     37985436560 12358793423 12237346212 18120396893 3554102 SRX9325181 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84472 0.0 0.22522 1.0 0.78293   0.57384 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61527 61527 SRR12858257 SRX9325180 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 2 S10 3Hour 2 S10 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_2_S10_L004_R1_001.fastq.gz 3Hour_2_S10_L004_R2_001.fastq.gz fastq fastq 76448858632.0 253141916.0 3Hour 2 S10 L004 R1 001.fastq.gz 0:151 1:151 A:35936389130;C:11685225790;G:11595239085;T:17228685305;N:3319322 151 151     35936389130 11685225790 11595239085 17228685305 3319322 SRX9325180 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84222 0.0 0.22514 1.0 0.78309   0.56453 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61528 61528 SRR12858258 SRX9325179 SRS7549493 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Hour   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Hour|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Hours 3Hour 1 S9 3Hour 1 S9 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Hour_1_S9_L004_R1_001.fastq.gz 3Hour_1_S9_L004_R2_001.fastq.gz fastq fastq 74702264584.0 247358492.0 3Hour 1 S9 L004 R1 001.fastq.gz 0:151 1:151 A:35096290154;C:11422923493;G:11335995120;T:16843790763;N:3265054 151 151     35096290154 11422923493 11335995120 16843790763 3265054 SRX9325179 SRS7549493 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.84313 0.0 0.2256 1.0 0.78514   0.57158 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61529 61529 SRR12858259 SRX9325178 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 4 S4 Control 4 S4 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_4_S4_L004_R1_001.fastq.gz Control_4_S4_L004_R2_001.fastq.gz fastq fastq 63748002502.0 211086101.0 Control 4 S4 L004 R1 001.fastq.gz 0:151 1:151 A:29580785771;C:10210575747;G:10201571462;T:13752296624;N:2772898 151 151     29580785771 10210575747 10201571462 13752296624 2772898 SRX9325178 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87565 0.0 0.22003 1.0 0.76808   0.5449 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61530 61530 SRR12858260 SRX9325177 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 3 S3 Control 3 S3 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_3_S3_L004_R1_001.fastq.gz Control_3_S3_L004_R2_001.fastq.gz fastq fastq 59006583476.0 195386038.0 Control 3 S3 L004 R1 001.fastq.gz 0:151 1:151 A:27374753929;C:9460015806;G:9444431483;T:12724779257;N:2603001 151 151     27374753929 9460015806 9444431483 12724779257 2603001 SRX9325177 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87809 0.0 0.22265 1.0 0.77141   0.54249 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61531 61531 SRR12858261 SRX9325176 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 2 S8 3Day 2 S8 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_4_S8_L004_R1_001.fastq.gz 3Day_4_S8_L004_R2_001.fastq.gz fastq fastq 84540262488.0 279934644.0 3Day 4 S8 L004 R1 001.fastq.gz 0:151 1:151 A:39522904023;C:13210312500;G:13112786947;T:18690553925;N:3705093 151 151     39522904023 13210312500 13112786947 18690553925 3705093 SRX9325176 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86134 0.0 0.22228 1.0 0.75741   0.53967 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61532 61532 SRR12858262 SRX9325175 SRS7549492 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish Intranasal rSpike 3Day   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal 100ng r Spike 3Day|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal r Spike 3Day 3Day 3 S7 3Day 3 S7 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     3Day_3_S7_L004_R1_001.fastq.gz 3Day_3_S7_L004_R2_001.fastq.gz fastq fastq 72504765812.0 240082006.0 3Day 3 S7 L004 R1 001.fastq.gz 0:151 1:151 A:33922644753;C:11322044063;G:11218554755;T:16038363159;N:3159082 151 151     33922644753 11322044063 11218554755 16038363159 3159082 SRX9325175 SRS7549492 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.86092 0.0 0.22194 1.0 0.75941   0.54693 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61533 61533 SRR12858263 SRX9325174 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 2 S2 Control 2 S2 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_2_S2_L004_R1_001.fastq.gz Control_2_S2_L004_R2_001.fastq.gz fastq fastq 64254998894.0 212764897.0 Control 2 S2 L004 R1 001.fastq.gz 0:151 1:151 A:29800534511;C:10295273086;G:10286925663;T:13869445548;N:2820086 151 151     29800534511 10295273086 10286925663 13869445548 2820086 SRX9325174 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87826 0.0 0.22134 1.0 0.77195   0.54341 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
61534 61534 SRR12858264 SRX9325173 SRS7549491 SRP287979 PRJNA668529 Single Cell Olfactory Organ of Zebrafish exposed to r Spike from SARS CoV 2 PRJNA668529 Other Captured fresh cells with 10x genomic chromium then sequenced with illumina NovaSeq         Zebrafish intranasal PBS   strain:AB|age:3 Months|sex:female and male|tissue:Olfactory Rosette|treatment:Intranasal PBS|BioSampleModel:Model organism or animal                 Single cell zebrafish olfactory organ: intranasal PBS Control 1 S1 Control 1 S1 Followed Chromium Next GEM Single Cell 3 Reagent Kits v3.1     RNA-Seq TRANSCRIPTOMIC SINGLE CELL PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP287979     Control_1_S1_L004_R1_001.fastq.gz Control_1_S1_L004_R2_001.fastq.gz fastq fastq 69676036606.0 230715353.0 Control 1 S1 L004 R1 001.fastq.gz 0:151 1:151 A:32349942335;C:11154687198;G:11132501059;T:15035845934;N:3060080 151 151     32349942335 11154687198 11132501059 15035845934 3060080 SRX9325173 SRS7549491 SRA1141422 University of New Mexico|Biology University of New Mexico 2 0.0 0.87698 0.0 0.2194 1.0 0.7685   0.53763 151 151 T B mate1 technical by mapping diff illumina novaseq_era unknown random_priming unknown sc single_cell_droplet 10x   Mexico 2020-10-21 Adult Adult Brain Nervous System
66125 66125 SRR15927836 SRX12217976 SRS10194179 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   0.1MPa Brain 3   strain:2|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Brain 3 0.1MPa Brain 3 0.1MPa Brain 3 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Brain_3_1.fq.gz 0.1MPa_Brain_3_2.fq.gz fastq fastq 17709592500.0 59031975.0 0.1MPa Brain 3 1.fq.gz 0:150 1:150 A:5050122818;C:3828301351;G:3830322874;T:5000784744;N:60713 150 150     5050122818 3828301351 3830322874 5000784744 60713 SRX12217976 SRS10194179 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.91481 0.91357 0.17076 0.17113 0.70309 0.70305 0.50067 0.50079 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66126 66126 SRR15927837 SRX12217975 SRS10194178 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   0.1MPa Brain 2   strain:1|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Brain 2 0.1MPa Brain 2 0.1MPa Brain 2 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Brain_2_1.fq.gz 0.1MPa_Brain_2_2.fq.gz fastq fastq 19231434900.0 64104783.0 0.1MPa Brain 2 1.fq.gz 0:150 1:150 A:5427851564;C:4214562145;G:4216958048;T:5371998369;N:64774 150 150     5427851564 4214562145 4216958048 5371998369 64774 SRX12217975 SRS10194178 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92168 0.92019 0.15008 0.14995 0.6982 0.6995 0.48765 0.49115 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66145 66145 SRR15927811 SRX12217956 SRS10194158 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   9MPa Brain 4   strain:33|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Brain 4 9MPa Brain 4 9MPa Brain 4 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Brain_4_1.fq.gz 9MPa_Brain_4_2.fq.gz fastq fastq 6363362400.0 21211208.0 9MPa Brain 4 1.fq.gz 0:150 1:150 A:1887876427;C:1310706818;G:1302669763;T:1862082531;N:26861 150 150     1887876427 1310706818 1302669763 1862082531 26861 SRX12217956 SRS10194158 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92963 0.92956 0.17223 0.17242 0.72413 0.72575 0.54151 0.54142 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66146 66146 SRR15927812 SRX12217955 SRS10194157 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   9MPa Brain 3   strain:32|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Brain 3 9MPa Brain 3 9MPa Brain 3 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Brain_3_1.fq.gz 9MPa_Brain_3_2.fq.gz fastq fastq 6439443300.0 21464811.0 9MPa Brain 3 1.fq.gz 0:150 1:150 A:1891577867;C:1339240114;G:1333486802;T:1875108025;N:30492 150 150     1891577867 1339240114 1333486802 1875108025 30492 SRX12217955 SRS10194157 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92532 0.92334 0.17909 0.17796 0.71179 0.71327 0.5147 0.51407 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66147 66147 SRR15927813 SRX12217954 SRS10194159 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   9MPa Brain 2   strain:31|dev stage:adult|sex:female|tissue:Brain|treatment:9MPa4h|BioSampleModel:Model organism or animal                 9MPa Brain 2 9MPa Brain 2 9MPa Brain 2 9MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     9MPa_Brain_2_1.fq.gz 9MPa_Brain_2_2.fq.gz fastq fastq 6406314600.0 21354382.0 9MPa Brain 2 1.fq.gz 0:150 1:150 A:1884855569;C:1331303630;G:1325109863;T:1865008742;N:36796 150 150     1884855569 1331303630 1325109863 1865008742 36796 SRX12217954 SRS10194159 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.9264 0.92492 0.17019 0.16974 0.71689 0.71814 0.51366 0.5128 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66159 66159 SRR15927825 SRX12217942 SRS10194144 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   0.1MPa Brain 4   strain:3|dev stage:adult|sex:female|tissue:Brain|treatment:control|BioSampleModel:Model organism or animal                 0.1MPa Brain 4 0.1MPa Brain 4 0.1MPa Brain 4 control     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     0.1MPa_Brain_4_1.fq.gz 0.1MPa_Brain_4_2.fq.gz fastq fastq 12513678000.0 41712260.0 0.1MPa Brain 4 1.fq.gz 0:150 1:150 A:3548749864;C:2726895166;G:2729241881;T:3508748781;N:42308 150 150     3548749864 2726895166 2729241881 3508748781 42308 SRX12217942 SRS10194144 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92173 0.92074 0.14621 0.14686 0.69948 0.69968 0.49793 0.49527 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66162 66162 SRR15927828 SRX12217939 SRS10194141 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate3   5MPa Brain 4   strain:18|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Brain 4 5MPa Brain 4 5MPa Brain 4 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Brain_4_1.fq.gz 5MPa_Brain_4_2.fq.gz fastq fastq 6515732100.0 21719107.0 5MPa Brain 4 1.fq.gz 0:150 1:150 A:1895537383;C:1377015055;G:1369148404;T:1874000386;N:30872 150 150     1895537383 1377015055 1369148404 1874000386 30872 SRX12217939 SRS10194141 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92449 0.9237 0.16953 0.16942 0.70796 0.70895 0.51088 0.51019 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66163 66163 SRR15927829 SRX12217938 SRS10194140 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate2   5MPa Brain 3   strain:17|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Brain 3 5MPa Brain 3 5MPa Brain 3 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Brain_3_1.fq.gz 5MPa_Brain_3_2.fq.gz fastq fastq 6693187200.0 22310624.0 5MPa Brain 3 1.fq.gz 0:150 1:150 A:1944561570;C:1414684507;G:1408582486;T:1925326111;N:32526 150 150     1944561570 1414684507 1408582486 1925326111 32526 SRX12217938 SRS10194140 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.925 0.92301 0.18661 0.1858 0.71713 0.71819 0.50213 0.509 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
66164 66164 SRR15927830 SRX12217937 SRS10194139 SRP337553 PRJNA764015 Short Term High Hydrostatic Pressure Responses at Gene Expression Level in Zebrafish PRJNA764015 Other the RNA seq data of four tissues of zebrafish treated by high hydrostatic pressure     replicate1   5MPa Brain 1   strain:16|dev stage:adult|sex:female|tissue:Brain|treatment:5MPa4h|BioSampleModel:Model organism or animal                 5MPa Brain 1 5MPa Brain 1 5MPa Brain 1 5MPa4h     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP337553     5MPa_Brain_1_1.fq.gz 5MPa_Brain_1_2.fq.gz fastq fastq 6390426300.0 21301421.0 5MPa Brain 1 1.fq.gz 0:150 1:150 A:1896095519;C:1314300619;G:1303853183;T:1876147725;N:29254 150 150     1896095519 1314300619 1303853183 1876147725 29254 SRX12217937 SRS10194139 SRA1295954 Northwestern Polytechnical University|School of Ecology and Environment Northwestern Polytechnical University 2 0.92731 0.92668 0.17712 0.17702 0.71855 0.71847 0.53502 0.53458 150 150 B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2021-09-17 Adult Adult Brain Nervous System
69512 69512 SRR18788788 SRX14888151 SRS12641616 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 18 C#1   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 10|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 18 C#1 18 C#1 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and10 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     22_R1.fastq.gz 22_R2.fastq.gz fastq fastq 3324021035.0 21135274.0 22 R1.fastq.gz 0:72.58 1:84.69 A:709069297;C:609813558;G:833766798;T:629234984;N:542136398 72 84     709069297 609813558 833766798 629234984 542136398 SRX14888151 SRS12641616 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.94692 0.94621 0.03803 0.03874 0.81042 0.83372 0.52786 0.5075 57 57 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69513 69513 SRR18788789 SRX14888150 SRS12641615 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 18.5 C#3   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 9|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 18.5 C#3 18.5 C#3 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 9 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     21_R1.fastq.gz 21_R2.fastq.gz fastq fastq 3311702356.0 21619022.0 21 R1.fastq.gz 0:73.04 1:80.14 A:732988567;C:638083975;G:717246361;T:647824727;N:575558726 73 80     732988567 638083975 717246361 647824727 575558726 SRX14888150 SRS12641615 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95409 0.95348 0.03411 0.03574 0.80746 0.8339 0.53211 0.52985 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69514 69514 SRR18788790 SRX14888149 SRS12641614 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 18.5 C#2   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 8|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 18.5 C#2 18.5 C#2 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 8 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     20_R1.fastq.gz 20_R2.fastq.gz fastq fastq 3451437092.0 22687504.0 20 R1.fastq.gz 0:72.23 1:79.90 A:776954554;C:665119388;G:761491377;T:686595528;N:561276245 72 79     776954554 665119388 761491377 686595528 561276245 SRX14888149 SRS12641614 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.9528 0.95207 0.04308 0.04432 0.79306 0.82031 0.51608 0.50226 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69515 69515 SRR18788791 SRX14888148 SRS12641613 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 18.5 C#1   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 18.5 C#1 18.5 C#1 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 7 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     19_R1.fastq.gz 19_R2.fastq.gz fastq fastq 3363483064.0 21731599.0 19 R1.fastq.gz 0:74.62 1:80.15 A:748827882;C:666974425;G:747248323;T:685069191;N:515363243 74 80     748827882 666974425 747248323 685069191 515363243 SRX14888148 SRS12641613 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95378 0.95181 0.04048 0.04057 0.79476 0.81586 0.52388 0.52275 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69516 69516 SRR18788792 SRX14888147 SRS12641612 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 19 C#3   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 19 C#3 19 C#3 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 6 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     18_R1.fastq.gz 18_R2.fastq.gz fastq fastq 4075422508.0 24751242.0 18 R1.fastq.gz 0:78.81 1:85.85 A:992084841;C:871091022;G:981780904;T:901376584;N:329089157 78 85     992084841 871091022 981780904 901376584 329089157 SRX14888147 SRS12641612 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95169 0.9503 0.04552 0.04657 0.76542 0.78581 0.51902 0.5272 147 150 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69517 69517 SRR18788793 SRX14888146 SRS12641611 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 19 C#2   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 5|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 19 C#2 19 C#2 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 5 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     17_R1.fastq.gz 17_R2.fastq.gz fastq fastq 3319147502.0 20078488.0 17 R1.fastq.gz 0:79.64 1:85.67 A:788844271;C:684668773;G:761658721;T:723476960;N:360498777 79 85     788844271 684668773 761658721 723476960 360498777 SRX14888146 SRS12641611 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95095 0.94994 0.04625 0.04757 0.78019 0.80365 0.52742 0.52809 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69518 69518 SRR18788794 SRX14888145 SRS12641610 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 19 C#1   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 19 C#1 19 C#1 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 4 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     16_R1.fastq.gz 16_R2.fastq.gz fastq fastq 3292929669.0 18994459.0 16 R1.fastq.gz 0:81.92 1:91.44 A:783592551;C:702218018;G:834072912;T:710056483;N:262989705 81 91     783592551 702218018 834072912 710056483 262989705 SRX14888145 SRS12641610 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95233 0.95046 0.03768 0.03882 0.78782 0.80939 0.526 0.5228 40 40 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69519 69519 SRR18788795 SRX14888144 SRS12641609 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 19.5 C#3   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 3|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 19.5 C#3 19.5 C#3 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 3 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     15_R1.fastq.gz 15_R2.fastq.gz fastq fastq 4481393341.0 26601175.0 15 R1.fastq.gz 0:77.69 1:90.78 A:1153272216;C:912833241;G:1063171897;T:966195506;N:385920481 77 90     1153272216 912833241 1063171897 966195506 385920481 SRX14888144 SRS12641609 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.94773 0.94692 0.06258 0.06426 0.7489 0.78681 0.52586 0.52107 43 151 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69520 69520 SRR18788796 SRX14888143 SRS12641608 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 18 C#3   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 12|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 18 C#3 18 C#3 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and12 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     24_R1.fastq.gz 24_R2.fastq.gz fastq fastq 3978368713.0 24472054.0 24 R1.fastq.gz 0:77.63 1:84.93 A:918424506;C:822360848;G:954428154;T:839856941;N:443298264 77 84     918424506 822360848 954428154 839856941 443298264 SRX14888143 SRS12641608 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95627 0.95469 0.03523 0.03586 0.7963 0.8145 0.51454 0.52535 150 151 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69521 69521 SRR18788797 SRX14888142 SRS12641607 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx ℃ 18 C#2   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 11|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx 18 C#2 18 C#2 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and11 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     23_R1.fastq.gz 23_R2.fastq.gz fastq fastq 4275732751.0 25584325.0 23 R1.fastq.gz 0:79.88 1:87.24 A:1036835054;C:911113753;G:1040374540;T:948477734;N:338931670 79 87     1036835054 911113753 1040374540 948477734 338931670 SRX14888142 SRS12641607 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95295 0.95143 0.04014 0.04043 0.77812 0.79717 0.52438 0.53036 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69522 69522 SRR18788798 SRX14888141 SRS12641606 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 19.5 C#2   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 2|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 19.5 C#2 19.5 C#2 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 2 g DNase I treated total RNA of each sample was used as the beginn material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.. x0000 x0000     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     14_R1.fastq.gz 14_R2.fastq.gz fastq fastq 4088072470.0 25250614.0 14 R1.fastq.gz 0:77.43 1:84.47 A:979787957;C:842289325;G:949394633;T:885868363;N:430732192 77 84     979787957 842289325 949394633 885868363 430732192 SRX14888141 SRS12641606 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95007 0.94819 0.05252 0.05302 0.76508 0.78711 0.5165 0.5232 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
69523 69523 SRR18788799 SRX14888140 SRS12641605 SRP370761 PRJNA827490 Transcriptome of female zebrafish brains under cold stress PRJNA827490 Whole Genome Sequencing The fecundity of zebrafish was examined post exposure to different cold temperatures at 19.5 degrees Celsius 19 degrees Celsius 18.5 degrees Celsius and 18 degrees Celsius. Temperature at 19 degrees Celsius showed no significant influence on the fecundity of zebrafish but temperatures at 18.5 degrees Celsius and 18 degrees Celsius significantly blocked the spawning of females. Then the brains of fish under cold stresses at different temperatures were collected for high throughput RNA seq assays.       zebrafish brain exposed to temperature at xxx.5 ℃ 19.5 C#1   strain:AB line|age:not collected|dev stage:adult|sex:female|tissue:brain|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal                 zebrafish brain exposed to temperature at xxx.5 19.5 C#1 19.5 C#1 One microgram of total RNA of each sample was used as the initial material for library construction. DNase I RNase free from Promega was used to eliminate genomic DNA contamination and 1 g DNase I treated total RNA of each sample was used as the beginning material. The NEBNext rRNA Depletion Kit was used for rRNA depletion. post that the RNAs were purified by using the Agencourt RNAClean XP Beads from Beckman Coulter. Subsequently RNA fragmentation first strand and second strand cDNA synthesis and double stranded cDNA end repair were performed using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina. Double strand cDNAs were purified using the Agencourt AMPure XP from Beckman Coulter and ligated to adaptors of the NEBNext Multiplex Oligos for Illumina. Finally the Q5 Hot Start HiFi PCR Master Mix NEB was used for PCR enrichment of the adaptor ligated DNA. Concentration and quality of the libraries were measured by using the Agilent High Sensitivity DNA Kit and a Bioanalyzer 2100 from Agilent Technologies.     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA NextSeq 500   SRP370761     13_R1.fastq.gz 13_R2.fastq.gz fastq fastq 4080384883.0 24618817.0 13 R1.fastq.gz 0:77.97 1:87.77 A:993781329;C:821953352;G:935058139;T:856264709;N:473327354 77 87     993781329 821953352 935058139 856264709 473327354 SRX14888140 SRS12641605 SRA1405741 Chinese Academy of Sciences|Institute of Hydrobiology Chinese Academy of Sciences 2 0.95194 0.95013 0.04684 0.04658 0.77078 0.80306 0.52964 0.5267 35 35 B B biological fallback assumption illumina nextseq unknown random_priming nebnext bulk unknown unknown   China 2022-04-18 Adult Adult Brain Nervous System
70784 70784 SRR20746126 SRX16766408 SRS14393173 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           SER 3   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: SER group SER 3 SER 3 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     SER-3_R1.fq.gz SER-3_R2.fq.gz fastq fastq 10839550816.0 72273402.0 SER 3 R1.fq.gz 0:149.98 1:149.98 A:3182432825;C:2228831624;G:2233476394;T:3193795182;N:1014791 149 149     3182432825 2228831624 2233476394 3193795182 1014791 SRX16766408 SRS14393173 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85802   0.27151   0.71492   0.49972   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70785 70785 SRR20746127 SRX16766407 SRS14393174 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           CBZ 1   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: CBZ group CBZ 1 CBZ 1 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     CBZ-1_R1.fq.gz CBZ-1_R2.fq.gz fastq fastq 13298946064.0 88669324.0 CBZ 1 R1.fq.gz 0:149.98 1:149.98 A:3842116704;C:2809472282;G:2796455814;T:3849670272;N:1230992 149 149     3842116704 2809472282 2796455814 3849670272 1230992 SRX16766407 SRS14393174 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85957   0.25044   0.71374   0.50507   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70786 70786 SRR20746128 SRX16766406 SRS14393172 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           CBZ 2   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: CBZ group CBZ 2 CBZ 2 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     CBZ-2_R1.fq.gz CBZ-2_R2.fq.gz fastq fastq 14459829906.0 96638626.0 CBZ 2 R1.fq.gz 0:149.63 1:149.63 A:4160725430;C:3063171820;G:3052911931;T:4181655623;N:1365102 149 149     4160725430 3063171820 3052911931 4181655623 1365102 SRX16766406 SRS14393172 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86567   0.25596   0.71449   0.50852   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70787 70787 SRR20746129 SRX16766405 SRS14393171 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           CBZ 3   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: CBZ group CBZ 3 CBZ 3 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Carbamazepine replication 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     CBZ-3_R1.fq.gz CBZ-3_R2.fq.gz fastq fastq 16108957416.0 107410616.0 CBZ 3 R1.fq.gz 0:149.98 1:149.98 A:4717472386;C:3336174502;G:3327523665;T:4724722887;N:3063976 149 149     4717472386 3336174502 3327523665 4724722887 3063976 SRX16766405 SRS14393171 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85405   0.27675   0.7263   0.52133   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-02 Adult Adult Brain Nervous System
70788 70788 SRR20746130 SRX16766404 SRS14393170 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           OCBZ 1   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: OCBZ group OCBZ 1 OCBZ 1 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     OCBZ-1_R1.fq.gz OCBZ-1_R2.fq.gz fastq fastq 16417017420.0 109717810.0 OCBZ 1 R1.fq.gz 0:149.63 1:149.63 A:4693430487;C:3496576880;G:3496747661;T:4727145866;N:3116526 149 149     4693430487 3496576880 3496747661 4727145866 3116526 SRX16766404 SRS14393170 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86592   0.24491   0.71127   0.49356   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-02 Adult Adult Brain Nervous System
70789 70789 SRR20746131 SRX16766403 SRS14393169 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           SER 2   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: SER group SER 2 SER 2 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     SER-2_R1.fq.gz SER-2_R2.fq.gz fastq fastq 15179687540.0 101219594.0 SER 2 R1.fq.gz 0:149.97 1:149.97 A:4381853152;C:3206608560;G:3192751641;T:4397058459;N:1415728 149 149     4381853152 3206608560 3192751641 4397058459 1415728 SRX16766403 SRS14393169 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86891   0.2519   0.7082   0.48963   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70790 70790 SRR20746132 SRX16766402 SRS14393168 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           SER 1   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: SER group SER 1 SER 1 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Sertraline replication 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     SER-1_R1.fq.gz SER-1_R2.fq.gz fastq fastq 14956682338.0 99910668.0 SER 1 R1.fq.gz 0:149.70 1:149.70 A:4317374732;C:3159586986;G:3152646784;T:4325675384;N:1398452 149 149     4317374732 3159586986 3152646784 4325675384 1398452 SRX16766402 SRS14393168 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86552   0.25213   0.69887   0.50356   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70791 70791 SRR20746133 SRX16766401 SRS14393167 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           DMSO 3   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: control group DMSO 3 DMSO 3 RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     DMSO-3_R1.fq.gz DMSO-3_R2.fq.gz fastq fastq 14605275792.0 97388216.0 DMSO 3 R1.fq.gz 0:149.97 1:149.97 A:4308449195;C:3004631170;G:2992147661;T:4298702223;N:1345543 149 149     4308449195 3004631170 2992147661 4298702223 1345543 SRX16766401 SRS14393167 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86696   0.25237   0.71143   0.5566   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70792 70792 SRR20746134 SRX16766400 SRS14393166 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           LTG 3   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: LTG group LTG 3 LTG 3 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     LTG-3_R1.fq.gz LTG-3_R2.fq.gz fastq fastq 11243797046.0 74969214.0 LTG 3 R1.fq.gz 0:149.98 1:149.98 A:3277664617;C:2351128090;G:2340047704;T:3272840145;N:2116490 149 149     3277664617 2351128090 2340047704 3272840145 2116490 SRX16766400 SRS14393166 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85767   0.25524   0.71504   0.50213   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70793 70793 SRR20746135 SRX16766399 SRS14393165 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           LTG 2   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: LTG group LTG 2 LTG 2 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     LTG-2_R1.fq.gz LTG-2_R2.fq.gz fastq fastq 11784576990.0 78577388.0 LTG 2 R1.fq.gz 0:149.97 1:149.97 A:3411428383;C:2475464697;G:2474273012;T:3421229296;N:2181602 149 149     3411428383 2475464697 2474273012 3421229296 2181602 SRX16766399 SRS14393165 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85415   0.25737   0.71577   0.49806   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70794 70794 SRR20746136 SRX16766398 SRS14393164 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           LTG 1   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: LTG group LTG 1 LTG 1 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to lamotrigine replication 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     LTG-1_R1.fq.gz LTG-1_R2.fq.gz fastq fastq 16579382146.0 110792520.0 LTG 1 R1.fq.gz 0:149.64 1:149.64 A:4709411596;C:3566205553;G:3555707503;T:4744923184;N:3134310 149 149     4709411596 3566205553 3555707503 4744923184 3134310 SRX16766398 SRS14393164 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86813   0.23848   0.7055   0.48832   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-02 Adult Adult Brain Nervous System
70795 70795 SRR20746137 SRX16766397 SRS14393162 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           OCBZ 3   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: OCBZ group OCBZ 3 OCBZ 3 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     OCBZ-3_R1.fq.gz OCBZ-3_R2.fq.gz fastq fastq 16441074420.0 109623656.0 OCBZ 3 R1.fq.gz 0:149.98 1:149.98 A:4790593528;C:3425919140;G:3421889342;T:4799548697;N:3123713 149 149     4790593528 3425919140 3421889342 4799548697 3123713 SRX16766397 SRS14393162 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86035   0.25644   0.69747   0.50144   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-02 Adult Adult Brain Nervous System
70796 70796 SRR20746138 SRX16766396 SRS14393161 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           OCBZ 2   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: OCBZ group OCBZ 2 OCBZ 2 RNAseq of Danio rerio: mixed brain tissue from Danio rerio exposed to Oxcarbazepine replication 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     OCBZ-2_R1.fq.gz OCBZ-2_R2.fq.gz fastq fastq 12778450318.0 85203058.0 OCBZ 2 R1.fq.gz 0:149.98 1:149.98 A:3785671797;C:2613766632;G:2603203318;T:3773410803;N:2397768 149 149     3785671797 2613766632 2603203318 3773410803 2397768 SRX16766396 SRS14393161 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.85095   0.27439   0.72466   0.51846   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System
70797 70797 SRR20746139 SRX16766395 SRS14393163 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           DMSO 2   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: control group DMSO 2 DMSO 2 RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     DMSO-2_R1.fq.gz DMSO-2_R2.fq.gz fastq fastq 16486464640.0 110204032.0 DMSO 2 R1.fq.gz 0:149.60 1:149.60 A:4730793483;C:3497060212;G:3491377818;T:4765662022;N:1571105 149 149     4730793483 3497060212 3491377818 4765662022 1571105 SRX16766395 SRS14393163 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86718   0.24955   0.70212   0.50107   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-02 Adult Adult Brain Nervous System
70798 70798 SRR20746140 SRX16766394 SRS14393160 SRP389277 PRJNA859990 Effects of psychotropic drugs on brain tissue of zebrafish PRJNA859990 Other           DMSO 1   strain:Wild type AB zebrafish|age:3.5 month|sex:not collected|tissue:brain|collection date:2020 01 06|geo loc name:China:Nanjing|sample type:mixed brain tissue samples|BioSampleModel:Model organism or animal                 RNAseq of Danio rerio: control group DMSO 1 DMSO 1 RNAseq of Danio rerio: mixed brain tissue from wile type Danio rerio replication 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP389277     DMSO-1_R1.fq.gz DMSO-1_R2.fq.gz fastq fastq 16398292390.0 109640658.0 DMSO 1 R1.fq.gz 0:149.56 1:149.56 A:4724674961;C:3466158531;G:3459736015;T:4746196552;N:1526331 149 149     4724674961 3466158531 3459736015 4746196552 1526331 SRX16766394 SRS14393160 SRA1465945 Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences|Laboratory of Lake Biology and Ecology Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences 1 0.86523   0.25273   0.71474   0.50305   150   B   usable mapping rate illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-08-01 Adult Adult Brain Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;