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run_metadata

42 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "PCR" and tissue_curation = "Embryo Imprecise"

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devstage_curation 4

experiment.library_strategy 2

devstage_curation_coarse 2

tissue_curation_coarse 1

tissue_curation 1

  • Embryo Imprecise · 42 ✖

technology 1

experiment.platform 1

experiment.library_source 1

experiment.library_selection 1

  • PCR · 42 ✖

experiment.library_layout 1

  • PAIRED · 42 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
33722 33722 SRR30640695 SRX26062515 SRS22631699 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         WT24hpfcontrol1   breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol1 embryo|BioSampleModel:Model organism or animal                 RNA seq of Wild type zebrafish : 12 embryos in total 2 3mg WT24hpfcontrol1 R WT24hpfcontrol1 R Wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     WT24hpfcontrol1_R1.clean.fq.gz WT24hpfcontrol1_R2.clean.fq.gz fastq fastq 6761688309.0 27496581.0 WT24hpfcontrol1 R1.clean.fq.gz 0:122.99 1:122.92 A:1946719560;C:1442103403;G:1451347536;T:1921456727;N:61083 122 122     1946719560 1442103403 1451347536 1921456727 61083 SRX26062515 SRS22631699 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33723 33723 SRR30640696 SRX26062514 SRS22631698 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1MOMutant3   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1MOMutant3 embryo|BioSampleModel:Model organism or animal                 RNA seq of MO morphants zebrafish : 12 embryos in total 2 5mg PCM1MOMutant3 R PCM1MOMutant3 R MO morphants zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1MOMutant3_R1.clean.fq.gz PCM1MOMutant3_R2.clean.fq.gz fastq fastq 6356420208.0 23407180.0 PCM1MOMutant3 R1.clean.fq.gz 0:135.78 1:135.78 A:1742323782;C:1448163439;G:1451783264;T:1714090084;N:59639 135 135     1742323782 1448163439 1451783264 1714090084 59639 SRX26062514 SRS22631698 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33724 33724 SRR30640697 SRX26062513 SRS22631697 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1MOMutant2   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1MOMutant2 embryo|BioSampleModel:Model organism or animal                 RNA seq of MO morphants zebrafish : 12 embryos in total 2 4mg PCM1MOMutant2 R PCM1MOMutant2 R MO morphants zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1MOMutant2_R1.clean.fq.gz PCM1MOMutant2_R2.clean.fq.gz fastq fastq 6146772469.0 22703012.0 PCM1MOMutant2 R1.clean.fq.gz 0:135.37 1:135.37 A:1647298308;C:1435201745;G:1438871965;T:1625343182;N:57269 135 135     1647298308 1435201745 1438871965 1625343182 57269 SRX26062513 SRS22631697 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33725 33725 SRR30640698 SRX26062512 SRS22631696 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1MOMutant1   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1MOMutant1 embryo|BioSampleModel:Model organism or animal                 RNA seq of MO morphants zebrafish : 12 embryos in total 2 3mg PCM1MOMutant1 R PCM1MOMutant1 R MO morphants zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1MOMutant1_R1.clean.fq.gz PCM1MOMutant1_R2.clean.fq.gz fastq fastq 5701775379.0 21587297.0 PCM1MOMutant1 R1.clean.fq.gz 0:132.06 1:132.06 A:1578153876;C:1282130829;G:1284978375;T:1556460380;N:51919 132 132     1578153876 1282130829 1284978375 1556460380 51919 SRX26062512 SRS22631696 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33726 33726 SRR30640699 SRX26062511 SRS22631695 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOmutant3   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOmutant3 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO mutant zebrafish : 12 embryos in total 2 5mg PCM1KOmutant3 R PCM1KOmutant3 R pcm1 KO mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOmutant3_R1.clean.fq.gz PCM1KOmutant3_R2.clean.fq.gz fastq fastq 4673179612.0 17529406.0 PCM1KOmutant3 R1.clean.fq.gz 0:133.29 1:133.30 A:1266929858;C:1078407007;G:1080490713;T:1247307342;N:44692 133 133     1266929858 1078407007 1080490713 1247307342 44692 SRX26062511 SRS22631695 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33727 33727 SRR30640700 SRX26062510 SRS22631694 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOmutant2   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOmutant2 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO mutant zebrafish : 12 embryos in total 2 4mg PCM1KOmutant2 R PCM1KOmutant2 R pcm1 KO mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOmutant2_R1.clean.fq.gz PCM1KOmutant2_R2.clean.fq.gz fastq fastq 6073820902.0 23767661.0 PCM1KOmutant2 R1.clean.fq.gz 0:127.78 1:127.77 A:1691243395;C:1356197711;G:1357868249;T:1668456939;N:54608 127 127     1691243395 1356197711 1357868249 1668456939 54608 SRX26062510 SRS22631694 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33728 33728 SRR30640701 SRX26062509 SRS22631693 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOmutant1   breed:Tg [ef1:Myr Tdtomato]|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOmutant1 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO mutant zebrafish : 12 embryos in total 2 3mg PCM1KOmutant1 R PCM1KOmutant1 R KO mutant zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOmutant1_R1.clean.fq.gz PCM1KOmutant1_R2.clean.fq.gz fastq fastq 6040589500.0 23826027.0 PCM1KOmutant1 R1.clean.fq.gz 0:126.76 1:126.76 A:1733588631;C:1297359473;G:1301151829;T:1708434373;N:55194 126 126     1733588631 1297359473 1301151829 1708434373 55194 SRX26062509 SRS22631693 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33729 33729 SRR30640702 SRX26062508 SRS22631692 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOcompensate3   breed:Tg [HuC:GFP|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOcompensate3 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO compensate zebrafish : 12 embryos in total 2 5mg PCM1KOcompensate3 R PCM1KOcompensate3 R pcm1 KO compensate zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOcompensate3_R1.clean.fq.gz PCM1KOcompensate3_R2.clean.fq.gz fastq fastq 5632945620.0 21351897.0 PCM1KOcompensate3 R1.clean.fq.gz 0:131.92 1:131.90 A:1561604697;C:1264380828;G:1267746178;T:1539161674;N:52243 131 131     1561604697 1264380828 1267746178 1539161674 52243 SRX26062508 SRS22631692 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33730 33730 SRR30640703 SRX26062507 SRS22631691 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         WT24hpfcontrol3   breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol3 embryo|BioSampleModel:Model organism or animal                 RNA seq of Wild type zebrafish : 12 embryos in total 2 5mg WT24hpfcontrol3 R WT24hpfcontrol3 R Wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     WT24hpfcontrol3_R1.clean.fq.gz WT24hpfcontrol3_R2.clean.fq.gz fastq fastq 5047867453.0 19837417.0 WT24hpfcontrol3 R1.clean.fq.gz 0:127.23 1:127.23 A:1412463929;C:1119657233;G:1121642146;T:1394058438;N:45707 127 127     1412463929 1119657233 1121642146 1394058438 45707 SRX26062507 SRS22631691 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33731 33731 SRR30640704 SRX26062506 SRS22631690 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         WT24hpfcontrol2   breed:natural spawning of AB adults|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:WT24hpfcontrol2 embryo|BioSampleModel:Model organism or animal                 RNA seq of Wild type zebrafish : 12 embryos in total 2 4mg WT24hpfcontrol2 R WT24hpfcontrol2 R Wild type zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     WT24hpfcontrol2_R1.clean.fq.gz WT24hpfcontrol2_R2.clean.fq.gz fastq fastq 5408273952.0 21601107.0 WT24hpfcontrol2 R1.clean.fq.gz 0:125.19 1:125.18 A:1510365712;C:1201646307;G:1204419555;T:1491793767;N:48611 125 125     1510365712 1201646307 1204419555 1491793767 48611 SRX26062506 SRS22631690 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33732 33732 SRR30640705 SRX26062505 SRS22631689 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOcompensate2   breed:Tg [HuC:GFP|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOcompensate2 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO compensate zebrafish : 12 embryos in total 2 4mg PCM1KOcompensate2 R PCM1KOcompensate2 R pcm1 KO compensate zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOcompensate2_R1.clean.fq.gz PCM1KOcompensate2_R2.clean.fq.gz fastq fastq 5996379188.0 22765993.0 PCM1KOcompensate2 R1.clean.fq.gz 0:131.70 1:131.70 A:1669800521;C:1339211911;G:1342418096;T:1644890999;N:57661 131 131     1669800521 1339211911 1342418096 1644890999 57661 SRX26062505 SRS22631689 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
33733 33733 SRR30640706 SRX26062504 SRS22631688 SRP532179 PRJNA1159911 Peri Centriolar Material 1 regulates polarized endosome dynamics and neural progenitor fate PRJNA1159911 Other RNA seq was performed on control and maternal zygotic developmentally defective pcm1 morphants MO and pcm1 knock out KO zebrafish embryos at 24 hpf.         PCM1KOcompensate1   breed:Tg [HuC:GFP|age:24hpf|dev stage:adult|collection date:2021 03 19|geo loc name:USA:San Francisco|sex:not determined|tissue:PCM1KOcompensate1 embryo|BioSampleModel:Model organism or animal                 RNA seq of pcm1 KO compensate zebrafish : 12 embryos in total 2 3mg PCM1KOcompensate1 R PCM1KOcompensate1 R pcm1 KO compensate zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP532179     PCM1KOcompensate1_R1.clean.fq.gz PCM1KOcompensate1_R2.clean.fq.gz fastq fastq 5594219881.0 21191291.0 PCM1KOcompensate1 R1.clean.fq.gz 0:131.99 1:131.99 A:1594003450;C:1214578517;G:1215705001;T:1569880851;N:52062 131 131     1594003450 1214578517 1215705001 1569880851 52062 SRX26062504 SRS22631688 SRA1970017 Huazhong Agricultural University, China|Department of Neurosurgery Huazhong Agricultural University, China                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-09-11 Multi-stage Multi-stage Embryo Imprecise All anatomical structures
44973 44973 SRR6374789 SRX3469648 SRS2757040 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 2.5hpf replicate3   strain:AB9|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT 256T3 WT 256T3 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_256T3_1.fq.gz WT_256T3_2.fq.gz fastq fastq 6640655400.0 22135518.0 WT 256T3 2.fq.gz 0:150 1:150 A:1739475484;C:1580378730;G:1596152227;T:1724360040;N:288919 150 150     1739475484 1580378730 1596152227 1724360040 288919 SRX3469648 SRS2757040 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.90981 0.91081 0.02171 0.02186 0.75741 0.75806 0.49376 0.49223 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44974 44974 SRR6374790 SRX3469647 SRS2757039 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 3.5hpf replicate1   strain:AB10|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT HIGHT1 WT HIGHT1 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_HIGHT1_1.fq.gz WT_HIGHT1_2.fq.gz fastq fastq 6664975200.0 22216584.0 WT HIGHT1 1.fq.gz 0:150 1:150 A:1719120604;C:1609236924;G:1628143616;T:1708202939;N:271117 150 150     1719120604 1609236924 1628143616 1708202939 271117 SRX3469647 SRS2757039 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92339 0.9242 0.0266 0.0266 0.74728 0.74941 0.49813 0.49574 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44975 44975 SRR6374791 SRX3469646 SRS2757037 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 2.5hpf replicate1   strain:AB7|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT 256T1 WT 256T1 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_256T1_1.fq.gz WT_256T1_2.fq.gz fastq fastq 6715609500.0 22385365.0 WT 256T1 2.fq.gz 0:150 1:150 A:1769395942;C:1591788099;G:1605398561;T:1748703695;N:323203 150 150     1769395942 1591788099 1605398561 1748703695 323203 SRX3469646 SRS2757037 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.90679 0.90847 0.02135 0.02116 0.76203 0.76268 0.49184 0.49246 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44976 44976 SRR6374792 SRX3469645 SRS2757036 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 2.5hpf replicate2   strain:AB8|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT 256T2 WT 256T2 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_256T2_1.fq.gz WT_256T2_2.fq.gz fastq fastq 6762998400.0 22543328.0 WT 256T2 1.fq.gz 0:150 1:150 A:1782100181;C:1603526988;G:1617249866;T:1759813396;N:307969 150 150     1782100181 1603526988 1617249866 1759813396 307969 SRX3469645 SRS2757036 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.89801 0.8976 0.02183 0.02165 0.76081 0.76203 0.49389 0.49424 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44977 44977 SRR6374793 SRX3469644 SRS2757038 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 3.5hpf replicate2   strain:AB5|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 HIGHT2 SL2 HIGHT2 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_HIGHT2_1.fq.gz SL2_HIGHT2_2.fq.gz fastq fastq 6676323300.0 22254411.0 SL2 HIGHT2 2.fq.gz 0:150 1:150 A:1767577251;C:1573479421;G:1588807215;T:1745946421;N:512992 150 150     1767577251 1573479421 1588807215 1745946421 512992 SRX3469644 SRS2757038 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.90205 0.90648 0.02777 0.0277 0.75584 0.75653 0.51823 0.51604 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44978 44978 SRR6374794 SRX3469643 SRS2757035 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 3.5hpf replicate3   strain:AB6|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 HIGHT3 SL2 HIGHT3 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_HIGHT3_1.fq.gz SL2_HIGHT3_2.fq.gz fastq fastq 6612611700.0 22042039.0 SL2 HIGHT3 2.fq.gz 0:150 1:150 A:1756988350;C:1553611782;G:1567364966;T:1734147606;N:498996 150 150     1756988350 1553611782 1567364966 1734147606 498996 SRX3469643 SRS2757035 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91343 0.91843 0.02757 0.0279 0.76867 0.7683 0.46658 0.4679 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44979 44979 SRR6374795 SRX3469642 SRS2757030 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 2.5hpf replicate3   strain:AB3|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 256T3 SL2 256T3 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_256T3_1.fq.gz SL2_256T3_2.fq.gz fastq fastq 6729597900.0 22431993.0 SL2 256T3 2.fq.gz 0:150 1:150 A:1817987703;C:1553037356;G:1567792944;T:1790273155;N:506742 150 150     1817987703 1553037356 1567792944 1790273155 506742 SRX3469642 SRS2757030 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91453 0.91763 0.02697 0.02736 0.75899 0.76059 0.51092 0.5108 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44980 44980 SRR6374796 SRX3469641 SRS2757033 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 3.5hpf replicate1   strain:AB4|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 HIGHT1 SL2 HIGHT1 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_HIGHT1_1.fq.gz SL2_HIGHT1_2.fq.gz fastq fastq 6732386100.0 22441287.0 SL2 HIGHT1 2.fq.gz 0:150 1:150 A:1731846790;C:1635335671;G:1650396210;T:1714309561;N:497868 150 150     1731846790 1635335671 1650396210 1714309561 497868 SRX3469641 SRS2757033 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.90909 0.91272 0.02301 0.023 0.75952 0.76077 0.49945 0.5001 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44981 44981 SRR6374797 SRX3469640 SRS2757031 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 2.5hpf replicate1   strain:AB1|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 256T1 SL2 256T1 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_256T1_1.fq.gz SL2_256T1_2.fq.gz fastq fastq 6743416800.0 22478056.0 SL2 256T1 2.fq.gz 0:150 1:150 A:1751516084;C:1621913942;G:1637195849;T:1732489990;N:300935 150 150     1751516084 1621913942 1637195849 1732489990 300935 SRX3469640 SRS2757031 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91673 0.91538 0.01822 0.01834 0.76086 0.76224 0.51335 0.5122 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44982 44982 SRR6374798 SRX3469639 SRS2757032 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         SL2 2.5hpf replicate2   strain:AB2|age:2.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo SL2 256T2 SL2 256T2 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     SL2_256T2_1.fq.gz SL2_256T2_2.fq.gz fastq fastq 6736499400.0 22454998.0 SL2 256T2 2.fq.gz 0:150 1:150 A:1768494405;C:1602695987;G:1616984435;T:1747813127;N:511446 150 150     1768494405 1602695987 1616984435 1747813127 511446 SRX3469639 SRS2757032 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91581 0.91836 0.02067 0.02056 0.7599 0.7599 0.51129 0.51126 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44983 44983 SRR6374799 SRX3469638 SRS2757034 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 3.5hpf replicate2   strain:AB11|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT HIGHT2 WT HIGHT2 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_HIGHT2_1.fq.gz WT_HIGHT2_2.fq.gz fastq fastq 6691178100.0 22303927.0 WT HIGHT2 1.fq.gz 0:150 1:150 A:1748847918;C:1599737657;G:1612813074;T:1729484535;N:294916 150 150     1748847918 1599737657 1612813074 1729484535 294916 SRX3469638 SRS2757034 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91783 0.91916 0.02166 0.02123 0.75556 0.75592 0.49807 0.49621 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
44984 44984 SRR6374800 SRX3469637 SRS2757029 SRP126712 PRJNA421571 Danio rerio Raw sequence reads PRJNA421571 Whole Genome Sequencing To compare the different expressed genes between knockout fish and wild type         WT 3.5hpf replicate3   strain:AB12|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal                 RNA Seq of danio rerio:embryo WT HIGHT3 WT HIGHT3 embryos quickly frozen in liquid nitrogen     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina HiSeq 4000   SRP126712     WT_HIGHT3_1.fq.gz WT_HIGHT3_2.fq.gz fastq fastq 6751652400.0 22505508.0 WT HIGHT3 2.fq.gz 0:150 1:150 A:1772149753;C:1607061948;G:1619916124;T:1752229372;N:295203 150 150     1772149753 1607061948 1619916124 1752229372 295203 SRX3469637 SRS2757029 SRA638743 Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering Institute of Hydrobiology, Chinese Academy of Sciences 2 0.90842 0.91132 0.02173 0.02189 0.76043 0.76171 0.49031 0.49021 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2021-01-01 Blastula Embryo Embryo Imprecise All anatomical structures
48726 48726 SRR7789580 SRX4644423 SRS3742493 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 3 S18   strain:5D|isolate:108|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 3 S18 TDCIPP 12hpf 3 S18 TDCIPP 12hpf 3 S18 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-3_S18_L001_R2_001.fastq.gz TDCIPP-12hpf-3_S18_L001_R1_001.fastq.gz fastq fastq 103340472.0 472844.0 TDCIPP 12hpf 3 S18 L001 R1 001.fastq.gz 0:109.23 1:109.32 A:26737838;C:24795090;G:24934613;T:26529096;N:343835 109 109     26737838 24795090 24934613 26529096 343835 SRX4644423 SRS3742493 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95154 0.95221 0.00019 0.00019 0.99922 0.99924 0.41074 0.41244 121 121 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48727 48727 SRR7789581 SRX4644422 SRS3742492 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 2 S17   strain:5D|isolate:107|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 2 S17 TDCIPP 12hpf 2 S17 TDCIPP 12hpf 2 S17 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-2_S17_L001_R1_001.fastq.gz TDCIPP-12hpf-2_S17_L001_R2_001.fastq.gz fastq fastq 127382315.0 575073.0 TDCIPP 12hpf 2 S17 L001 R1 001.fastq.gz 0:110.70 1:110.81 A:32604644;C:30882861;G:31076792;T:32385804;N:432214 110 110     32604644 30882861 31076792 32385804 432214 SRX4644422 SRS3742492 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.94383 0.94386 0.00021 0.00022 0.99926 0.99926 0.41023 0.38711 151 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48728 48728 SRR7789582 SRX4644421 SRS3742490 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 12hpf 1 S16   strain:5D|isolate:106|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 12hpf 1 S16 TDCIPP 12hpf 1 S16 TDCIPP 12hpf 1 S16 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-12hpf-1_S16_L001_R1_001.fastq.gz TDCIPP-12hpf-1_S16_L001_R2_001.fastq.gz fastq fastq 106771425.0 482515.0 TDCIPP 12hpf 1 S16 L001 R1 001.fastq.gz 0:110.59 1:110.69 A:27853264;C:25384933;G:25518809;T:27629968;N:384451 110 110     27853264 25384933 25518809 27629968 384451 SRX4644421 SRS3742490 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95913 0.95873 0.00021 0.00025 0.99928 0.99928 0.4122 0.39928 79 79 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48729 48729 SRR7789583 SRX4644420 SRS3742491 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 3 S9x   strain:5D|isolate:105|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 3 S9x DMSO 12hpf 3 S9x DMSO 12hpf 3 S9x Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-3_S9x_L001_R2_001.fastq.gz DMSO-12hpf-3_S9x_L001_R1_001.fastq.gz fastq fastq 106526213.0 483892.0 DMSO 12hpf 3 S9x L001 R2 001.fastq.gz 0:110.00 1:110.14 A:27523846;C:25609135;G:25786277;T:27228622;N:378333 110 110     27523846 25609135 25786277 27228622 378333 SRX4644420 SRS3742491 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95736 0.95668 0.00013 0.00011 0.99924 0.99926 0.45348 0.45617 77 77 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48730 48730 SRR7789584 SRX4644419 SRS3742489 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 2 S8   strain:5D|isolate:104|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 2 S8 DMSO 12hpf 2 S8 DMSO 12hpf 2 S8 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-2_S8_L001_R1_001.fastq.gz DMSO-12hpf-2_S8_L001_R2_001.fastq.gz fastq fastq 126754105.0 599652.0 DMSO 12hpf 2 S8 L001 R1 001.fastq.gz 0:105.62 1:105.76 A:32875248;C:30352965;G:30543115;T:32575671;N:407106 105 105     32875248 30352965 30543115 32575671 407106 SRX4644419 SRS3742489 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.9631 0.96229 0.00019 0.00019 0.99928 0.99928 0.45939 0.44598 92 92 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48731 48731 SRR7789585 SRX4644418 SRS3742488 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 12hpf 1 S7   strain:5D|isolate:103|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 12hpf 1 S7 DMSO 12hpf 1 S7 DMSO 12hpf 1 S7 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-12hpf-1_S7_L001_R2_001.fastq.gz DMSO-12hpf-1_S7_L001_R1_001.fastq.gz fastq fastq 133973234.0 626692.0 DMSO 12hpf 1 S7 L001 R1 001.fastq.gz 0:106.86 1:106.92 A:34741794;C:32048895;G:32233963;T:34368689;N:579893 106 106     34741794 32048895 32233963 34368689 579893 SRX4644418 SRS3742488 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.961 0.9606 0.0002 0.00021 0.99928 0.99928 0.47357 0.45763 74 74 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Segmentation Embryo Embryo Imprecise All anatomical structures
48732 48732 SRR7789586 SRX4644417 SRS3742487 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 5 S15   strain:5D|isolate:102|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 5 S15 TDCIPP 6hpf 5 S15 TDCIPP 6hpf 5 S15 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-5_S15_L001_R1_001.fastq.gz TDCIPP-6hpf-5_S15_L001_R2_001.fastq.gz fastq fastq 103436592.0 515633.0 TDCIPP 6hpf 5 S15 L001 R2 001.fastq.gz 0:100.23 1:100.37 A:26213221;C:25393681;G:25395332;T:25877353;N:557005 100 100     26213221 25393681 25395332 25877353 557005 SRX4644417 SRS3742487 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.9545 0.9544 0.00043 0.0004 0.99898 0.99904 0.33908 0.3596 64 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48733 48733 SRR7789587 SRX4644416 SRS3742486 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 3 S14   strain:5D|isolate:101|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 3 S14 TDCIPP 6hpf 3 S14 TDCIPP 6hpf 3 S14 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-3_S14_L001_R1_001.fastq.gz TDCIPP-6hpf-3_S14_L001_R2_001.fastq.gz fastq fastq 99767681.0 500238.0 TDCIPP 6hpf 3 S14 L001 R2 001.fastq.gz 0:99.64 1:99.80 A:25255312;C:24464400;G:24481390;T:25002218;N:564361 99 99     25255312 24464400 24481390 25002218 564361 SRX4644416 SRS3742486 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96117 0.96052 0.00028 0.00028 0.99924 0.99922 0.35418 0.35375 148 149 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48752 48752 SRR7789606 SRX4644397 SRS3742467 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 5 S6   strain:5D|isolate:99|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 5 S6 DMSO 6hpf 5 S6 DMSO 6hpf 5 S6 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-5_S6_L001_R1_001.fastq.gz DMSO-6hpf-5_S6_L001_R2_001.fastq.gz fastq fastq 107736291.0 525615.0 DMSO 6hpf 5 S6 L001 R2 001.fastq.gz 0:102.38 1:102.59 A:27251903;C:26520518;G:26567935;T:26878661;N:517274 102 102     27251903 26520518 26567935 26878661 517274 SRX4644397 SRS3742467 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96019 0.95982 0.00045 0.00043 0.99918 0.99916 0.37174 0.3343 151 148 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48753 48753 SRR7789607 SRX4644396 SRS3742466 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 6hpf 1 S13   strain:5D|isolate:100|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 6hpf 1 S13 TDCIPP 6hpf 1 S13 TDCIPP 6hpf 1 S13 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-6hpf-1_S13_L001_R2_001.fastq.gz TDCIPP-6hpf-1_S13_L001_R1_001.fastq.gz fastq fastq 91271391.0 448917.0 TDCIPP 6hpf 1 S13 L001 R2 001.fastq.gz 0:101.61 1:101.71 A:23269221;C:22266290;G:22291849;T:22983659;N:460372 101 101     23269221 22266290 22291849 22983659 460372 SRX4644396 SRS3742466 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96069 0.96135 0.0005 0.00051 0.99916 0.99916 0.34621 0.3774 76 76 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48754 48754 SRR7789608 SRX4644395 SRS3742465 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 2 S1   strain:5D|isolate:91|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 2 S1 DMSO 3hpf 2 S1 DMSO 3hpf 2 S1 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-2_S1_L001_R1_001.fastq.gz DMSO-3hpf-2_S1_L001_R2_001.fastq.gz fastq fastq 143035914.0 673342.0 DMSO 3hpf 2 S1 L001 R2 001.fastq.gz 0:106.19 1:106.24 A:37104542;C:34199194;G:34286529;T:36802368;N:643281 106 106     37104542 34199194 34286529 36802368 643281 SRX4644395 SRS3742465 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.97329 0.97288 0.00018 0.00017 0.99931 0.99931 0.41042 0.4514 39 39 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48755 48755 SRR7789609 SRX4644394 SRS3742464 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 3 S2   strain:5D|isolate:92|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 3 S2 DMSO 3hpf 3 S2 DMSO 3hpf 3 S2 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-3_S2_L001_R2_001.fastq.gz DMSO-3hpf-3_S2_L001_R1_001.fastq.gz fastq fastq 121995763.0 560778.0 DMSO 3hpf 3 S2 L001 R2 001.fastq.gz 0:108.73 1:108.82 A:31569811;C:29316325;G:29402755;T:31346545;N:360327 108 108     31569811 29316325 29402755 31346545 360327 SRX4644394 SRS3742464 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.96945 0.96871 0.00029 0.00031 0.99924 0.99924 0.3498 0.37356 134 134 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48756 48756 SRR7789610 SRX4644393 SRS3742463 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 3hpf 4 S3   strain:5D|isolate:93|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 3hpf 4 S3 DMSO 3hpf 4 S3 DMSO 3hpf 4 S3 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-3hpf-4_S3_L001_R1_001.fastq.gz DMSO-3hpf-4_S3_L001_R2_001.fastq.gz fastq fastq 131169421.0 625415.0 DMSO 3hpf 4 S3 L001 R2 001.fastq.gz 0:104.81 1:104.92 A:33973430;C:31403379;G:31490054;T:33651313;N:651245 104 104     33973430 31403379 31490054 33651313 651245 SRX4644393 SRS3742463 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98214 0.98232 0.00039 0.00042 0.99931 0.99928 0.43853 0.43838 94 94 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48757 48757 SRR7789611 SRX4644392 SRS3742462 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 1 S10   strain:5D|isolate:94|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 1 S10 TDCIPP 3hpf 1 S10 TDCIPP 3hpf 1 S10 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-1_S10_L001_R2_001.fastq.gz TDCIPP-3hpf-1_S10_L001_R1_001.fastq.gz fastq fastq 142472001.0 675614.0 TDCIPP 3hpf 1 S10 L001 R2 001.fastq.gz 0:105.40 1:105.48 A:37237954;C:33780885;G:33866153;T:36894511;N:692498 105 105     37237954 33780885 33866153 36894511 692498 SRX4644392 SRS3742462 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98448 0.98456 3e-05 5e-05 0.99928 0.99926 0.44535 0.45235 89 89 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48758 48758 SRR7789612 SRX4644391 SRS3742461 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 2 S11   strain:5D|isolate:95|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 2 S11 TDCIPP 3hpf 2 S11 TDCIPP 3hpf 2 S11 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-2_S11_L001_R1_001.fastq.gz TDCIPP-3hpf-2_S11_L001_R2_001.fastq.gz fastq fastq 135473127.0 649900.0 TDCIPP 3hpf 2 S11 L001 R2 001.fastq.gz 0:104.20 1:104.25 A:35005838;C:32424512;G:32538931;T:34827379;N:676467 104 104     35005838 32424512 32538931 34827379 676467 SRX4644391 SRS3742461 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.98266 0.98245 0.0 0.0 0.99933 0.99933 0.49436 0.49577 59 59 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48759 48759 SRR7789613 SRX4644390 SRS3742460 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         TDCIPP 3hpf 4 S12   strain:5D|isolate:96|dev stage:3 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 TDCIPP 3hpf 4 S12 TDCIPP 3hpf 4 S12 TDCIPP 3hpf 4 S12 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     TDCIPP-3hpf-4_S12_L001_R1_001.fastq.gz TDCIPP-3hpf-4_S12_L001_R2_001.fastq.gz fastq fastq 126387362.0 600422.0 TDCIPP 3hpf 4 S12 L001 R1 001.fastq.gz 0:105.21 1:105.28 A:32731869;C:30187130;G:30351165;T:32470755;N:646443 105 105     32731869 30187130 30351165 32470755 646443 SRX4644390 SRS3742460 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.97915 0.97875 0.00012 0.00011 0.99933 0.99933 0.44431 0.44577 117 117 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Blastula Embryo Embryo Imprecise All anatomical structures
48760 48760 SRR7789614 SRX4644389 SRS3742459 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 1 S4   strain:5D|isolate:97|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 1 S4 DMSO 6hpf 1 S4 DMSO 6hpf 1 S4 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-1_S4_L001_R2_001.fastq.gz DMSO-6hpf-1_S4_L001_R1_001.fastq.gz fastq fastq 95806388.0 464892.0 DMSO 6hpf 1 S4 L001 R2 001.fastq.gz 0:103.02 1:103.07 A:24562000;C:23294432;G:23307788;T:24218011;N:424157 103 103     24562000 23294432 23307788 24218011 424157 SRX4644389 SRS3742459 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95656 0.95712 0.0004 0.00039 0.99918 0.99916 0.34071 0.34145 94 151 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures
48761 48761 SRR7789615 SRX4644388 SRS3742458 SRP159670 PRJNA475635 Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis PRJNA475635 Other The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.         DMSO 6hpf 3 S5   strain:5D|isolate:98|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal                 DMSO 6hpf 3 S5 DMSO 6hpf 3 S5 DMSO 6hpf 3 S5 Nextera XT DNA Library Prep kit     AMPLICON TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina MiniSeq   SRP159670     DMSO-6hpf-3_S5_L001_R1_001.fastq.gz DMSO-6hpf-3_S5_L001_R2_001.fastq.gz fastq fastq 105210098.0 508250.0 DMSO 6hpf 3 S5 L001 R1 001.fastq.gz 0:103.44 1:103.57 A:26828273;C:25677269;G:25721655;T:26524232;N:458669 103 103     26828273 25677269 25721655 26524232 458669 SRX4644388 SRS3742458 SRA767209 University of California, Riverside|Environmental Sciences University of California, Riverside 2 0.95583 0.95513 0.00047 0.00045 0.99916 0.99918 0.30844 0.29023 42 42 B B biological fallback assumption illumina miseq unknown random_priming nextera bulk unknown unknown   United States 2018-09-05 Gastrula Embryo Embryo Imprecise All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;