RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

196 rows where experiment.library_layout = "PAIRED", experiment.library_selection = "Oligo-dT" and tissue_curation = "Liver"

✎ View and edit SQL

This data as json, CSV (advanced)

devstage_curation 5

devstage_curation_coarse 4

technology 2

experiment.library_source 2

tissue_curation_coarse 1

tissue_curation 1

  • Liver · 196 ✖

experiment.platform 1

experiment.library_strategy 1

experiment.library_selection 1

  • Oligo-dT · 196 ✖

experiment.library_layout 1

  • PAIRED · 196 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
280 280 DRR161311 DRX151936 DRS095335 DRP005084 PRJDB7735 Gene expression profile in adult zebrafish liver DRP005084 Transcriptome Analysis Increasing use of zebrafish in toxicological researches requires knowledge on gene expression profile in liver that play a major role in xenobiotic metabolism. Our research provide a basal gene expression profile in adult zebrafish liver.       Transcriptome of female Danio rerio liver SAMD00153247   sample name:transcriptome zebrafish female|sex:female|strain:RIKEN WT|tissue:liver                 NextSeq 500 paired end sequencing of SAMD00153247 DRX151936 f 1 1   RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP005084 NextSeq 500 paired end sequencing of SAMD00153247       2338564937.0 15498367.0 DRR161311 0:75.45 1:75.44 A:613899755;C:541756858;G:548366901;T:633083422;N:1458001 75 75     613899755 541756858 548366901 633083422 1458001 DRX151936 DRS095335 DRA007652 OBICHIKU|Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine 2 0.95814 0.96362 0.05394 0.04517 0.77932 0.7834 0.37385 0.37264 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Japan 2019-05-20 Undetermined Adult Liver Liver and Biliary System
281 281 DRR161310 DRX151935 DRS095334 DRP005084 PRJDB7735 Gene expression profile in adult zebrafish liver DRP005084 Transcriptome Analysis Increasing use of zebrafish in toxicological researches requires knowledge on gene expression profile in liver that play a major role in xenobiotic metabolism. Our research provide a basal gene expression profile in adult zebrafish liver.       Transcriptome of male Danio rerio liver SAMD00153246   sample name:transcriptome zebrafish male|sex:male|strain:RIKEN WT|tissue:liver                 NextSeq 500 paired end sequencing of SAMD00153246 DRX151935 m 1 1   RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP005084 NextSeq 500 paired end sequencing of SAMD00153246       2506978527.0 16611154.0 DRR161310 0:75.48 1:75.44 A:672321355;C:568289588;G:569411670;T:695545626;N:1410288 75 75     672321355 568289588 569411670 695545626 1410288 DRX151935 DRS095334 DRA007652 OBICHIKU|Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine Laboratory of Toxicology, Department of Veterinary Medicine, Obihiro University of Agriculture and Veterinary Medicine 2 0.94746 0.95115 0.07899 0.06363 0.80837 0.8115 0.52008 0.58743 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Japan 2019-05-20 Undetermined Adult Liver Liver and Biliary System
9355 9355 ERR2983453 ERX2986069 ERS2955657 ERP112513 PRJEB30097 RNA Seq of Danionine species E-MTAB-7476 Transcriptome Analysis Tissues specific transcriptomes of Danio rerio Danio albolineatus and Danio aesculapii Brain Liver and Gonads. ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05   Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers. R3wL SAMEA5147912 University of Hamburg, Institute of Zoology, Molecular Animal Physiology ENA FIRST PUBLIC:2018 12 05T17:02:27Z|ENA LAST UPDATE:2018 12 05T10:01:48Z|External Id:SAMEA5147912|INSDC center name:University of Hamburg Institute of Zoology Molecular Animal Physiology|INSDC first public:2018 12 05T17:02:27Z|INSDC last update:2018 12 05T10:01:48Z|INSDC status:public|Submitter Id:E MTAB 7476:R3wL|age:3|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|individual:3|organism part:liver|sample name:E MTAB 7476:R3wL|scientific name:Danio rerio|sex:female|strain:tu                 Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species E MTAB 7476:R3wL p R3wL p RNA Seq of Danionine species Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers. Experimental Factor: organism:Danio rerio|Experimental Factor: organism part:liver RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 4000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> ERP112513 Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05 FCHNW2WBBXX_L6_HKZEBodsEAADRAAPEI-207_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAADRAAPEI-207_2.fq.gz fastq fastq 3900536400.0 19502682.0 E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAADRAAPEI 207 0:100 1:100 A:1018803847;C:926996866;G:925339368;T:1028563032;N:833287 100 100     1018803847 926996866 925339368 1028563032 833287 ERX2986069 ERS2955657 ERA1674470 University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive 2 0.97722 0.97727 0.02792 0.02783 0.84476 0.84664 0.17004 0.16966 100 100 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Germany 2018-12-05 Adult Adult Liver Liver and Biliary System
9358 9358 ERR2983450 ERX2986066 ERS2955654 ERP112513 PRJEB30097 RNA Seq of Danionine species E-MTAB-7476 Transcriptome Analysis Tissues specific transcriptomes of Danio rerio Danio albolineatus and Danio aesculapii Brain Liver and Gonads. ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05   Protocols: Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers. R1wL SAMEA5147909 University of Hamburg, Institute of Zoology, Molecular Animal Physiology ENA FIRST PUBLIC:2018 12 05T17:02:27Z|ENA LAST UPDATE:2018 12 05T10:01:48Z|External Id:SAMEA5147909|INSDC center name:University of Hamburg Institute of Zoology Molecular Animal Physiology|INSDC first public:2018 12 05T17:02:27Z|INSDC last update:2018 12 05T10:01:48Z|INSDC status:public|Submitter Id:E MTAB 7476:R1wL|age:3|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|genotype:wild type genotype|individual:1|organism part:liver|sample name:E MTAB 7476:R1wL|scientific name:Danio rerio|sex:female|strain:tu                 Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danio9 species E MTAB 7476:R1wL p R1wL p RNA Seq of Danionine species Organs were sampled and snap frozen in liquid nitrogen RNA was extracted using Trizol and standard silica membrane protocol Library was constructed using magnetic beads dT to enrich mRNA. post fragmentation the cDNA was synthesized using the mRNA fragments as templates with random hexamer primers. Experimental Factor: organism:Danio rerio|Experimental Factor: organism part:liver RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 4000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_LABEL>F</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_LABEL>R</READ_LABEL><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> ERP112513 Illumina HiSeq 4000 paired end sequencing; RNA Seq of Danionine species ENA FIRST PUBLIC:2018 12 05|ENA LAST UPDATE:2018 12 05 FCHNW2WBBXX_L6_HKZEBodsEAACRAAPEI-206_1.fq.gz FCHNW2WBBXX_L6_HKZEBodsEAACRAAPEI-206_2.fq.gz fastq fastq 3542921400.0 17714607.0 E MTAB 7476:FCHNW2WBBXX L6 HKZEBodsEAACRAAPEI 206 0:100 1:100 A:927287253;C:840581371;G:838113814;T:936174847;N:764115 100 100     927287253 840581371 838113814 936174847 764115 ERX2986066 ERS2955654 ERA1674470 University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive University of Hamburg, Institute of Zoology, Molecular Animal Physiology|European Nucleotide Archive 2 0.9748 0.9739 0.02815 0.02746 0.84248 0.84439 0.17403 0.17668 100 100 B B biological fallback assumption illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Germany 2018-12-05 Adult Adult Liver Liver and Biliary System
9833 9833 ERR4029234 ERX4030550 ERS4513988 ERP121186 PRJEB37848 RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E-MTAB-8959 Transcriptome Analysis The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation. ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16   Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. ZF L 1 SAMEA6786308 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786308|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF L 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:liver|sample name:E MTAB 8959:ZF L 1|scientific name:Danio rerio|sex:male                 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E MTAB 8959:ZF L 1 p ZF L 1 p RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. Experimental Factor: organism part:liver|Experimental Factor: organism:Danio rerio RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 2500   ERP121186 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16 ZF-L-1_ATTACTCG-TATAGCCT_R1_001.fastq.gz ZF-L-1_ATTACTCG-TATAGCCT_R2_001.fastq.gz fastq fastq 6531942312.0 25920406.0 E MTAB 8959:ZF L 1 ATTACTCG TATAGCCT R 0:126 1:126 A:1742074981;C:1508007466;G:1507640617;T:1773534883;N:684365 126 126     1742074981 1508007466 1507640617 1773534883 684365 ERX4030550 ERS4513988 ERA2508028 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive 2 0.95365 0.94664 0.057 0.05639 0.78334 0.78451 0.57079 0.57336 126 126 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   Norway 2020-04-16 Adult Adult Liver Liver and Biliary System
9836 9836 ERR4029231 ERX4030547 ERS4513985 ERP121186 PRJEB37848 RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E-MTAB-8959 Transcriptome Analysis The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation. ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16   Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. ZF G 1 SAMEA6786305 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786305|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF G 1|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:gut|sample name:E MTAB 8959:ZF G 1|scientific name:Danio rerio|sex:male                 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E MTAB 8959:ZF G 1 p ZF G 1 p RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. Experimental Factor: organism part:gut|Experimental Factor: organism:Danio rerio RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 2500   ERP121186 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16 ZF-G-1_ATTACTCG-GTACTGAC_R1_001.fastq.gz ZF-G-1_ATTACTCG-GTACTGAC_R2_001.fastq.gz fastq fastq 4704841764.0 18670007.0 E MTAB 8959:ZF G 1 ATTACTCG GTACTGAC R 0:126 1:126 A:1201875466;C:1104244497;G:1149324323;T:1248857914;N:539564 126 126     1201875466 1104244497 1149324323 1248857914 539564 ERX4030547 ERS4513985 ERA2508028 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive 2 0.95324 0.95304 0.0643 0.06517 0.67588 0.68239 0.55928 0.55357 126 126 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   Norway 2020-04-16 Adult Adult Liver Liver and Biliary System
9839 9839 ERR4029220 ERX4030536 ERS4513974 ERP121186 PRJEB37848 RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E-MTAB-8959 Transcriptome Analysis The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation. ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16   Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. ZF L 3 SAMEA6786294 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:16Z|External Id:SAMEA6786294|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:16Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF L 3|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:liver|sample name:E MTAB 8959:ZF L 3|scientific name:Danio rerio|sex:female                 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E MTAB 8959:ZF L 3 p ZF L 3 p RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. Experimental Factor: organism part:liver|Experimental Factor: organism:Danio rerio RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 2500   ERP121186 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16 ZF-L-3_ATTACTCG-CCTATCCT_R1_001.fastq.gz ZF-L-3_ATTACTCG-CCTATCCT_R2_001.fastq.gz fastq fastq 4015386648.0 15934074.0 E MTAB 8959:ZF L 3 ATTACTCG CCTATCCT R 0:126 1:126 A:1056740845;C:942055204;G:937642096;T:1078450107;N:498396 126 126     1056740845 942055204 937642096 1078450107 498396 ERX4030536 ERS4513974 ERA2508028 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive 2 0.96926 0.97065 0.03757 0.03737 0.81592 0.81742 0.30093 0.3039 126 126 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   Norway 2020-04-16 Adult Adult Liver Liver and Biliary System
9840 9840 ERR4029216 ERX4030532 ERS4513970 ERP121186 PRJEB37848 RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E-MTAB-8959 Transcriptome Analysis The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation. ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16   Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. ZF L 6 SAMEA6786290 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:15Z|External Id:SAMEA6786290|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:15Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF L 6|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:liver|sample name:E MTAB 8959:ZF L 6|scientific name:Danio rerio|sex:not available                 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E MTAB 8959:ZF L 6 p ZF L 6 p RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. Experimental Factor: organism part:liver|Experimental Factor: organism:Danio rerio RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 2500   ERP121186 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16 ZF-L-6_ATTACTCG-GGCTCTGA_R1_001.fastq.gz ZF-L-6_ATTACTCG-GGCTCTGA_R2_001.fastq.gz fastq fastq 4678483320.0 18565410.0 E MTAB 8959:ZF L 6 ATTACTCG GGCTCTGA R 0:126 1:126 A:1222934876;C:1105593331;G:1115480454;T:1234057377;N:417282 126 126     1222934876 1105593331 1115480454 1234057377 417282 ERX4030532 ERS4513970 ERA2508028 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive 2 0.96734 0.97048 0.03122 0.02865 0.84293 0.84482 0.2604 0.27423 126 126 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   Norway 2020-04-16 Adult Adult Liver Liver and Biliary System
9841 9841 ERR4029215 ERX4030531 ERS4513969 ERP121186 PRJEB37848 RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E-MTAB-8959 Transcriptome Analysis The aim of this sequencing experiment was to make available tissue expression panels for selected fish species for comparative expression studies between the species. Tissue samples were collected for zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss. Tissue types included liver skin muscle heart gut gill eye brain for all three species with additionally pyloric caeca kidney head kidney and spleen for rainbow trout. Only liver samples were taken in replicate of four or three for rainbow trout. All fish were raised under standard rearing conditions for the species. Total RNA was extracted from the tissue samples and paired end sequencing of sample libraries was completed on an Illumina HiSeq 2500 with 125 bp reads. Processed count tables per species as raw counts FPKM or TPM were generated from read alignment to the Ensembl genomes of the respective species using STAR and gene level counting using RSEM and Ensembl gene annotation. ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 04 16   Protocols: Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. ZF L 5 SAMEA6786289 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences ENA FIRST PUBLIC:2020 04 30T04:03:51Z|ENA LAST UPDATE:2020 04 16T14:24:15Z|External Id:SAMEA6786289|INSDC center name:CIGENE Faculty of Biosciences The Norwegian University of Life Sciences|INSDC first public:2020 04 30T04:03:51Z|INSDC last update:2020 04 16T14:24:15Z|INSDC status:public|Submitter Id:E MTAB 8959:ZF L 5|broker name:ArrayExpress|common name:zebrafish|developmental stage:adult|organism part:liver|sample name:E MTAB 8959:ZF L 5|scientific name:Danio rerio|sex:not available                 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss E MTAB 8959:ZF L 5 p ZF L 5 p RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss Tissue samples of multiple types were collected from adult individuals of zebrafish medaka and rainbow trout. Liver tissue samples were taken in replicates of four or three in the case of rainbow trout. All fish were raised in fresh water under standard rearing conditions in aquaculture facilities rainbow trout: Aquagen broodstock tanks at NIVA solbergstranda or animal laboratory facilities zebrafish medaka: VetBio adamstuen. Total RNA was extracted from the tissue samples using the RNeasy Plus Universal Kit QIAGEN. Quality was determined on a 2100 Bioanalyzer using the RNA 6000 Nano Kit Agilent. Concentration was determined using a Nanodrop 8000 spectrophotometer Thermo Scientific. cDNA libraries were prepared using the TruSeq Stranded mRNA HT Sample Prep Kit Illumina. Library mean length was determined by running on a 2100 Bioanalyzer using the DNA 1000 Kit Agilent and library concentration was determined with the Qbit BR Kit Thermo Scientific. Experimental Factor: organism part:liver|Experimental Factor: organism:Danio rerio RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina HiSeq 2500   ERP121186 Illumina HiSeq 2500 paired end sequencing; RNA seq of tissue panel samples from zebrafish Danio rerio medaka Oryzias latipes and rainbow trout Oncorhynchus mykiss ENA FIRST PUBLIC:2020 04 30|ENA LAST UPDATE:2020 06 19 ZF-L-5_ATTACTCG-ATAGAGGC_R1_001.fastq.gz ZF-L-5_ATTACTCG-ATAGAGGC_R2_001.fastq.gz fastq fastq 4735140228.0 18790239.0 E MTAB 8959:ZF L 5 ATTACTCG ATAGAGGC R 0:126 1:126 A:1234730507;C:1119686445;G:1126456409;T:1253805646;N:461221 126 126     1234730507 1119686445 1126456409 1253805646 461221 ERX4030531 ERS4513969 ERA2508028 CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive CIGENE, Faculty of Biosciences, The Norwegian University of Life Sciences|European Nucleotide Archive 2 0.96297 0.96851 0.02196 0.02241 0.86598 0.8687 0.25119 0.2498 126 126 B B biological fallback assumption illumina hiseq_era unknown poly_a trueseq bulk unknown unknown   Norway 2020-04-16 Adult Adult Liver Liver and Biliary System
30605 30605 SRR27885298 SRX23547062 SRS20394839 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Treat3   breed:AB|dev stage:7 dpf|collection date:2022 01 06|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=treat biolobical replicate 3|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio t3 t3 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     treat3_1.fq.gz treat3_2.fq.gz fastq fastq 11227897200.0 37426324.0 treat3 1.fq.gz 0:150 1:150 A:2841991870;C:2760705502;G:2843113319;T:2781984816;N:101693 150 150     2841991870 2760705502 2843113319 2781984816 101693 SRX23547062 SRS20394839 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.9395 0.93765 0.03042 0.02991 0.75943 0.76282 0.52931 0.52802 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
30606 30606 SRR27885299 SRX23547061 SRS20394838 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Control3   breed:AB|dev stage:7 dpf|collection date:2022 01 06|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=control biolobical replicate 3|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio c3 c3 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     control3_1.fq.gz control3_2.fq.gz fastq fastq 13204860600.0 44016202.0 control3 1.fq.gz 0:150 1:150 A:3362002161;C:3237033953;G:3340888463;T:3264815850;N:120173 150 150     3362002161 3237033953 3340888463 3264815850 120173 SRX23547061 SRS20394838 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.94114 0.94099 0.03313 0.0336 0.7611 0.76562 0.52598 0.54255 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
30607 30607 SRR27885300 SRX23547060 SRS20394837 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Treat2   breed:AB|dev stage:7 dpf|collection date:2022 01 02|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=treat biolobical replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio t2 t2 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     treat2_1.fq.gz treat2_2.fq.gz fastq fastq 13686972300.0 45623241.0 treat2 1.fq.gz 0:150 1:150 A:3497540140;C:3330959709;G:3473656510;T:3384780397;N:35544 150 150     3497540140 3330959709 3473656510 3384780397 35544 SRX23547060 SRS20394837 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.94978 0.9476 0.02247 0.02209 0.77508 0.78104 0.5376 0.54975 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
30608 30608 SRR27885301 SRX23547059 SRS20394836 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Control2   breed:AB|dev stage:7 dpf|collection date:2022 01 02|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=control biolobical replicate 2|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio c2 c2 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     control2_1.fq.gz control2_2.fq.gz fastq fastq 13075274400.0 43584248.0 control2 1.fq.gz 0:150 1:150 A:3297304643;C:3196925316;G:3364735785;T:3216273784;N:34872 150 150     3297304643 3196925316 3364735785 3216273784 34872 SRX23547059 SRS20394836 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.94539 0.94301 0.02162 0.02151 0.78358 0.78886 0.53728 0.52362 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
30609 30609 SRR27885302 SRX23547058 SRS20394835 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Treat1   breed:AB|dev stage:7 dpf|collection date:2021 12 22|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=treat biolobical replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio t1 t1 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     treat1_1.fq.gz treat1_2.fq.gz fastq fastq 14810228700.0 49367429.0 treat1 1.fq.gz 0:150 1:150 A:3737682638;C:3643663419;G:3815975423;T:3612867530;N:39690 150 150     3737682638 3643663419 3815975423 3612867530 39690 SRX23547058 SRS20394835 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.94911 0.94637 0.0196 0.0194 0.76928 0.77406 0.52665 0.53607 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
30610 30610 SRR27885303 SRX23547057 SRS20394834 SRP488393 PRJNA1073712 Danio rerio Raw sequence reads PRJNA1073712 Whole Genome Sequencing normal RNAseq of Danio rerio         Control1   breed:AB|dev stage:7 dpf|collection date:2021 12 22|geo loc name:China: Wuhan|sex:not determined|tissue:liver|replicate:replicate=control biolobical replicate 1|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio c1 c1 normal RNA seq of Danio rerio     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP488393     control1_1.fq.gz control1_2.fq.gz fastq fastq 13024707900.0 43415693.0 control1 1.fq.gz 0:150 1:150 A:3266649802;C:3212798200;G:3383472165;T:3161753039;N:34694 150 150     3266649802 3212798200 3383472165 3161753039 34694 SRX23547057 SRS20394834 SRA1798310 Wuhan University|School of Basic Medical Sciences Wuhan University 2 0.93586 0.9333 0.02078 0.02096 0.77197 0.77729 0.53822 0.52512 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-02-06 Larval Larval Liver Liver and Biliary System
32695 32695 SRR29406579 SRX24920076 SRS21625737 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes were exposed to the first parallel group for xxx days 4 1L LTFA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 28|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTFA 1L LTFA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTFA-1L.R1.fq.gz LTFA-1L.R2.fq.gz fastq fastq 7055070900.0 23516903.0 LTFA 1L.R1.fq.gz 0:150 1:150 A:1807337916;C:1674299371;G:1741443458;T:1831719305;N:270850 150 150     1807337916 1674299371 1741443458 1831719305 270850 SRX24920076 SRS21625737 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91757 0.91901 0.05066 0.05102 0.77171 0.77374 0.48939 0.495 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32696 32696 SRR29406580 SRX24920075 SRS21625738 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A third parallel group with medium particle size was exposed for 15 days 3 5L MTFC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 26|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTFC 5L MTFC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTFC-5L.R1.fq.gz MTFC-5L.R2.fq.gz fastq fastq 5884371600.0 19614572.0 MTFC 5L.R1.fq.gz 0:150 1:150 A:1511226389;C:1383833941;G:1480444885;T:1508613837;N:252548 150 150     1511226389 1383833941 1480444885 1508613837 252548 SRX24920075 SRS21625738 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.87714 0.87949 0.01411 0.0137 0.86198 0.86285 0.19648 0.19651 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32697 32697 SRR29406581 SRX24920074 SRS21625736 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A second parallel group with medium particle size was exposed for 15 days 3 3L MTFB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 26|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTFB 3L MTFB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTFB-3L.R1.fq.gz MTFB-3L.R2.fq.gz fastq fastq 6708393300.0 22361311.0 MTFB 3L.R1.fq.gz 0:150 1:150 A:1678369325;C:1641781687;G:1681573048;T:1706401947;N:267293 150 150     1678369325 1641781687 1681573048 1706401947 267293 SRX24920074 SRS21625736 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93274 0.93376 0.04805 0.04842 0.79476 0.79529 0.55499 0.5555 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32698 32698 SRR29406582 SRX24920073 SRS21625735 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Medium particle size was exposed to the first parallel group for xxx days 3 1L MTFA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 26|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTFA 1L MTFA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTFA-1L.R2.fq.gz MTFA-1L.R1.fq.gz fastq fastq 6455936400.0 21519788.0 MTFA 1L.R1.fq.gz 0:150 1:150 A:1667919004;C:1519280764;G:1581543758;T:1686932721;N:260153 150 150     1667919004 1519280764 1581543758 1686932721 260153 SRX24920073 SRS21625735 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93767 0.93437 0.01603 0.0158 0.86521 0.86671 0.24414 0.24217 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32699 32699 SRR29406583 SRX24920072 SRS21625734 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle sizes were exposed to a third parallel group for xxx days 2 5L STFC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 27|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STFC 5L STFC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STFC-5L.R2.fq.gz STFC-5L.R1.fq.gz fastq fastq 7730560800.0 25768536.0 STFC 5L.R1.fq.gz 0:150 1:150 A:1680625200;C:2172450443;G:2175632591;T:1701559733;N:292833 150 150     1680625200 2172450443 2175632591 1701559733 292833 SRX24920072 SRS21625734 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.97616 0.9752 0.11829 0.11704 0.93914 0.93961 0.70296 0.70372 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32700 32700 SRR29406584 SRX24920071 SRS21625732 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle sizes were exposed to a second parallel group for xxx days 2 3L STFB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 27|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STFB 3L STFB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STFB-3L.R1.fq.gz STFB-3L.R2.fq.gz fastq fastq 6171661500.0 20572205.0 STFB 3L.R1.fq.gz 0:150 1:150 A:1583989791;C:1477717758;G:1519265653;T:1590335046;N:353252 150 150     1583989791 1477717758 1519265653 1590335046 353252 SRX24920071 SRS21625732 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.94241 0.94384 0.01462 0.01469 0.862 0.8622 0.30579 0.30696 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32701 32701 SRR29406585 SRX24920070 SRS21625733 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle sizes were exposed to the first parallel group for xxx days 2 1L STFA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 27|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STFA 1L STFA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STFA-1L.R2.fq.gz STFA-1L.R1.fq.gz fastq fastq 7075146900.0 23583823.0 STFA 1L.R1.fq.gz 0:150 1:150 A:1812764832;C:1682966238;G:1735839659;T:1843290534;N:285637 150 150     1812764832 1682966238 1735839659 1843290534 285637 SRX24920070 SRS21625733 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91829 0.91995 0.03145 0.03105 0.81053 0.81099 0.53909 0.53761 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32704 32704 SRR29406588 SRX24920067 SRS21625729 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes were exposed to the first parallel group for xxx days 10 1L LTTA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTTA 1L LTTA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTTA-1L.R2.fq.gz LTTA-1L.R1.fq.gz fastq fastq 6064405500.0 20214685.0 LTTA 1L.R1.fq.gz 0:150 1:150 A:1576134992;C:1415739596;G:1493736523;T:1578552921;N:241468 150 150     1576134992 1415739596 1493736523 1578552921 241468 SRX24920067 SRS21625729 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.94088 0.94271 0.01847 0.01795 0.85638 0.85742 0.25267 0.25292 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32705 32705 SRR29406589 SRX24920066 SRS21625727 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A third parallel group was exposed to medium particle size for xxx days 9 5L MTTC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 09|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTTC 5L MTTC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTTC-5L.R1.fq.gz MTTC-5L.R2.fq.gz fastq fastq 6333134700.0 21110449.0 MTTC 5L.R1.fq.gz 0:150 1:150 A:1656130694;C:1476275038;G:1538663809;T:1661814759;N:250400 150 150     1656130694 1476275038 1538663809 1661814759 250400 SRX24920066 SRS21625727 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93948 0.94097 0.01518 0.01516 0.90015 0.90053 0.1475 0.13565 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32706 32706 SRR29406590 SRX24920065 SRS21625728 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A second parallel group was exposed to medium particle size for xxx days 9 3L MTTB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 09|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTTB 3L MTTB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTTB-3L.R1.fq.gz MTTB-3L.R2.fq.gz fastq fastq 7037445000.0 23458150.0 MTTB 3L.R1.fq.gz 0:150 1:150 A:1842184775;C:1624910081;G:1733071779;T:1836999549;N:278816 150 150     1842184775 1624910081 1733071779 1836999549 278816 SRX24920065 SRS21625728 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.9311 0.93317 0.0163 0.01615 0.86774 0.86951 0.18615 0.18704 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32707 32707 SRR29406591 SRX24920064 SRS21625725 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Medium particle size exposure for 90 days in the first parallel group 9 1L MTTA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 09|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTTA 1L MTTA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTTA-1L.R1.fq.gz MTTA-1L.R2.fq.gz fastq fastq 7031049900.0 23436833.0 MTTA 1L.R1.fq.gz 0:150 1:150 A:1828835490;C:1620351293;G:1749887912;T:1831690634;N:284571 150 150     1828835490 1620351293 1749887912 1831690634 284571 SRX24920064 SRS21625725 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93411 0.93657 0.00573 0.00591 0.91849 0.91894 0.10237 0.103 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32708 32708 SRR29406592 SRX24920063 SRS21625724 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A third parallel group with a small particle size was exposed for 90 days 8 5L STTC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STTC 5L STTC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STTC-5L.R1.fq.gz STTC-5L.R2.fq.gz fastq fastq 6891339600.0 22971132.0 STTC 5L.R1.fq.gz 0:150 1:150 A:1819117054;C:1553057888;G:1690688658;T:1828199577;N:276423 150 150     1819117054 1553057888 1690688658 1828199577 276423 SRX24920063 SRS21625724 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91705 0.91899 0.04318 0.04374 0.80381 0.80415 0.55211 0.56724 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32709 32709 SRR29406593 SRX24920062 SRS21625726 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A second parallel group with a small particle size was exposed for 90 days 8 3L STTB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STTB 3L STTB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STTB-3L.R1.fq.gz STTB-3L.R2.fq.gz fastq fastq 6570030000.0 21900100.0 STTB 3L.R1.fq.gz 0:150 1:150 A:1690975146;C:1564225621;G:1621688669;T:1692868248;N:272316 150 150     1690975146 1564225621 1621688669 1692868248 272316 SRX24920062 SRS21625726 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.95279 0.95202 0.02386 0.02362 0.86294 0.86409 0.2793 0.27575 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32710 32710 SRR29406594 SRX24920061 SRS21625723 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle sizes were exposed to the first parallel group for xxx days 8 1L STTA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2024 01 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STTA 1L STTA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STTA-1L.R1.fq.gz STTA-1L.R2.fq.gz fastq fastq 5892909000.0 19643030.0 STTA 1L.R1.fq.gz 0:150 1:150 A:1531487428;C:1394443763;G:1436030479;T:1530696008;N:251322 150 150     1531487428 1394443763 1436030479 1530696008 251322 SRX24920061 SRS21625723 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.9001 0.90116 0.01365 0.01336 0.88162 0.88264 0.1606 0.16061 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32711 32711 SRR29406595 SRX24920060 SRS21625722 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle size was purified for 15 days in the third parallel group 7 5L LTSC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 12|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTSC 5L LTSC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTSC-5L.R1.fq.gz LTSC-5L.R2.fq.gz fastq fastq 6852115500.0 22840385.0 LTSC 5L.R1.fq.gz 0:150 1:150 A:1671772600;C:1719008309;G:1755333509;T:1705730926;N:270156 150 150     1671772600 1719008309 1755333509 1705730926 270156 SRX24920060 SRS21625722 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93091 0.93223 0.05636 0.05666 0.80562 0.80566 0.55506 0.54239 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32712 32712 SRR29406596 SRX24920059 SRS21625721 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     A third parallel group from the control group 1 5L CGFC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 29|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver CGFC 5L CGFC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     CGFC-5L.R1.fq.gz CGFC-5L.R2.fq.gz fastq fastq 6940142100.0 23133807.0 CGFC 5L.R1.fq.gz 0:150 1:150 A:1775555252;C:1643888771;G:1716597931;T:1803833289;N:266857 150 150     1775555252 1643888771 1716597931 1803833289 266857 SRX24920059 SRS21625721 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.92169 0.92322 0.03465 0.0348 0.80742 0.80817 0.56642 0.559 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32713 32713 SRR29406597 SRX24920058 SRS21625719 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle size was purified for 15 days in the second parallel group 7 3L LTSB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 12|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTSB 3L LTSB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTSB-3L.R1.fq.gz LTSB-3L.R2.fq.gz fastq fastq 6422707200.0 21409024.0 LTSB 3L.R1.fq.gz 0:150 1:150 A:1643993125;C:1532143642;G:1587318399;T:1659002858;N:249176 150 150     1643993125 1532143642 1587318399 1659002858 249176 SRX24920058 SRS21625719 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93311 0.93458 0.02518 0.02488 0.7973 0.79815 0.3792 0.37322 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32714 32714 SRR29406598 SRX24920057 SRS21625720 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle size purifying the first parallel group in 15 days 7 1L LTSA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 12|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTSA 1L LTSA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTSA-1L.R1.fq.gz LTSA-1L.R2.fq.gz fastq fastq 5902095900.0 19673653.0 LTSA 1L.R1.fq.gz 0:150 1:150 A:1516697038;C:1407290641;G:1449034658;T:1528729790;N:343773 150 150     1516697038 1407290641 1449034658 1528729790 343773 SRX24920057 SRS21625720 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.90998 0.91244 0.02068 0.02071 0.7783 0.77853 0.3163 0.31523 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32715 32715 SRR29406599 SRX24920056 SRS21625718 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Medium particle size was purified for 15 days in a third parallel group 6 5L MTSC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTSC 5L MTSC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTSC-5L.R1.fq.gz MTSC-5L.R2.fq.gz fastq fastq 6320748000.0 21069160.0 MTSC 5L.R1.fq.gz 0:150 1:150 A:1636210855;C:1500079346;G:1543130919;T:1641070669;N:256211 150 150     1636210855 1500079346 1543130919 1641070669 256211 SRX24920056 SRS21625718 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.94545 0.9478 0.01549 0.01493 0.86162 0.86202 0.20246 0.21933 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32716 32716 SRR29406600 SRX24920055 SRS21625717 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Medium particle size was purified for 15 days in the second parallel group 6 3L MTSB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTSB 3L MTSB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTSB-3L.R1.fq.gz MTSB-3L.R2.fq.gz fastq fastq 6730863900.0 22436213.0 MTSB 3L.R1.fq.gz 0:150 1:150 A:1734436984;C:1594580228;G:1655519943;T:1746055032;N:271713 150 150     1734436984 1594580228 1655519943 1746055032 271713 SRX24920055 SRS21625717 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.93848 0.93997 0.02174 0.02124 0.82832 0.82905 0.25974 0.26176 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32717 32717 SRR29406601 SRX24920054 SRS21625716 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Medium particle size was purified for 15 days by the first parallel group 6 1L MTSA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 10|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver MTSA 1L MTSA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     MTSA-1L.R1.fq.gz MTSA-1L.R2.fq.gz fastq fastq 6480265500.0 21600885.0 MTSA 1L.R1.fq.gz 0:150 1:150 A:1663931994;C:1545977339;G:1596507131;T:1673597479;N:251557 150 150     1663931994 1545977339 1596507131 1673597479 251557 SRX24920054 SRS21625716 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.94301 0.9442 0.01839 0.01805 0.83782 0.83816 0.24052 0.24897 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32718 32718 SRR29406602 SRX24920053 SRS21625715 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle size was purified for 15 days in a third parallel group 5 5L STSC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STSC 5L STSC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STSC-5L.R1.fq.gz STSC-5L.R2.fq.gz fastq fastq 7062074100.0 23540247.0 STSC 5L.R1.fq.gz 0:150 1:150 A:1830474945;C:1684428035;G:1721961922;T:1824937880;N:271318 150 150     1830474945 1684428035 1721961922 1824937880 271318 SRX24920053 SRS21625715 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.94308 0.94287 0.01164 0.0115 0.87578 0.87649 0.16764 0.16771 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32719 32719 SRR29406603 SRX24920052 SRS21625714 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle size was purified for 15 days in the second parallel group 5 3L STSB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STSB 3L STSB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STSB-3L.R1.fq.gz STSB-3L.R2.fq.gz fastq fastq 6317501400.0 21058338.0 STSB 3L.R1.fq.gz 0:150 1:150 A:1595686097;C:1528031899;G:1568306906;T:1625221652;N:254846 150 150     1595686097 1528031899 1568306906 1625221652 254846 SRX24920052 SRS21625714 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.92956 0.93181 0.03485 0.03514 0.79338 0.79316 0.48308 0.48569 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32720 32720 SRR29406604 SRX24920051 SRS21625713 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Small particle size was purified for 15 days by the first parallel group 5 1L STSA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver STSA 1L STSA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     STSA-1L.R1.fq.gz STSA-1L.R2.fq.gz fastq fastq 7031903100.0 23439677.0 STSA 1L.R1.fq.gz 0:150 1:150 A:1774542729;C:1701626234;G:1757526171;T:1797939757;N:268209 150 150     1774542729 1701626234 1757526171 1797939757 268209 SRX24920051 SRS21625713 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.92654 0.92679 0.04362 0.04305 0.74564 0.74651 0.54542 0.54549 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32721 32721 SRR29406605 SRX24920050 SRS21625712 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes exposed a third parallel group for xxx days 4 5L LTFC 5L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 28|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTFC 5L LTFC 5L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTFC-5L.R1.fq.gz LTFC-5L.R2.fq.gz fastq fastq 5882978400.0 19609928.0 LTFC 5L.R1.fq.gz 0:150 1:150 A:1498299867;C:1404165892;G:1460305982;T:1519938113;N:268546 150 150     1498299867 1404165892 1460305982 1519938113 268546 SRX24920050 SRS21625712 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.89349 0.89258 0.05254 0.0515 0.75856 0.76035 0.52349 0.50657 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32722 32722 SRR29406606 SRX24920049 SRS21625710 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     Large particle sizes were exposed to a second parallel group for xxx days 4 3L LTFB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 28|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver LTFB 3L LTFB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     LTFB-3L.R1.fq.gz LTFB-3L.R2.fq.gz fastq fastq 7526640900.0 25088803.0 LTFB 3L.R1.fq.gz 0:150 1:150 A:1917817690;C:1792155763;G:1868631683;T:1947735409;N:300355 150 150     1917817690 1792155763 1868631683 1947735409 300355 SRX24920049 SRS21625710 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91944 0.9226 0.04855 0.04907 0.78916 0.7903 0.53735 0.54281 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32723 32723 SRR29406607 SRX24920048 SRS21625711 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     The second parallel group of the black group 1 3L CGFB 3L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 29|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver CGFB 3L CGFB 3L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     CGFB-3L.R1.fq.gz CGFB-3L.R2.fq.gz fastq fastq 6340024800.0 21133416.0 CGFB 3L.R1.fq.gz 0:150 1:150 A:1624517577;C:1503492338;G:1555982997;T:1655780853;N:251035 150 150     1624517577 1503492338 1555982997 1655780853 251035 SRX24920048 SRS21625711 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.91743 0.92051 0.0403 0.04045 0.77761 0.77906 0.54509 0.55333 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
32724 32724 SRR29406608 SRX24920047 SRS21625709 SRP513845 PRJNA1123436 Transcriptome analysis of liver tissue of zebrafish PRJNA1123436 Other We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.     The first parallel group in the control group 1 1L CGFA 1L   isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 10 29|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA Seq in Danio rerio: adult liver CGFA 1L CGFA 1L normal RNA Seq nodules     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP513845     CGFA-1L.R1.fq.gz CGFA-1L.R2.fq.gz fastq fastq 6359325600.0 21197752.0 CGFA 1L.R1.fq.gz 0:150 1:150 A:1647759356;C:1484611626;G:1571861144;T:1654848368;N:245106 150 150     1647759356 1484611626 1571861144 1654848368 245106 SRX24920047 SRS21625709 SRA1897556 Qingdao University of Science and technology|College of marine science and biological engineeri Qingdao University of Science and technology 2 0.924 0.92387 0.01548 0.01504 0.87939 0.87894 0.16789 0.17027 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-06-13 Adult Adult Liver Liver and Biliary System
34581 34581 SRR32125135 SRX27471510 SRS23895968 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASSR1   strain:not applicable|isolate:Mus musculus19|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASSR1 ASSR1 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000605-ASS_1L.R1.raw.fastq.gz L1HIK2000605-ASS_1L.R2.raw.fastq.gz fastq fastq 7298160086.0 24166093.0 L1HIK2000605 ASS 1L.R1.raw.fastq.gz 0:151 1:151 A:2037516227;C:1601847069;G:1642611261;T:2014718780;N:1466749 151 151     2037516227 1601847069 1642611261 2014718780 1466749 SRX27471510 SRS23895968 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34582 34582 SRR32125136 SRX27471509 SRS23895967 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASFR3   strain:not applicable|isolate:Mus musculus15|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASFR3 ASFR3 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000603-ASF_3L.R1.raw.fastq.gz L1HIK2000603-ASF_3L.R2.raw.fastq.gz fastq fastq 6491451344.0 21494872.0 L1HIK2000603 ASF 3L.R1.raw.fastq.gz 0:151 1:151 A:1795206241;C:1438198039;G:1475008310;T:1782791582;N:247172 151 151     1795206241 1438198039 1475008310 1782791582 247172 SRX27471509 SRS23895967 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34583 34583 SRR32125137 SRX27471508 SRS23895966 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASFR2   strain:not applicable|isolate:Mus musculus14|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASFR2 ASFR2 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000602-ASF_2L.R1.raw.fastq.gz L1HIK2000602-ASF_2L.R2.raw.fastq.gz fastq fastq 6735923968.0 22304384.0 L1HIK2000602 ASF 2L.R1.raw.fastq.gz 0:151 1:151 A:1812097852;C:1549123368;G:1578628853;T:1795878499;N:195396 151 151     1812097852 1549123368 1578628853 1795878499 195396 SRX27471508 SRS23895966 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34584 34584 SRR32125138 SRX27471507 SRS23895969 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASFR1   strain:not applicable|isolate:Mus musculus13|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASFR1 ASFR1 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000601-ASF_1L.R1.raw.fastq.gz L1HIK2000601-ASF_1L.R2.raw.fastq.gz fastq fastq 6457659960.0 21382980.0 L1HIK2000601 ASF 1L.R1.raw.fastq.gz 0:151 1:151 A:1799338325;C:1421023027;G:1450668515;T:1785102976;N:1527117 151 151     1799338325 1421023027 1450668515 1785102976 1527117 SRX27471507 SRS23895969 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34585 34585 SRR32125139 SRX27471506 SRS23895964 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALSR3   strain:not applicable|isolate:Mus musculus9|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALSR3 ALSR3 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000600-ALS_9L.R1.raw.fastq.gz L1HIK2000600-ALS_9L.R2.raw.fastq.gz fastq fastq 8181038664.0 27089532.0 L1HIK2000600 ALS 9L.R1.raw.fastq.gz 0:151 1:151 A:2184536889;C:1888577755;G:1921580186;T:2184698956;N:1644878 151 151     2184536889 1888577755 1921580186 2184698956 1644878 SRX27471506 SRS23895964 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34586 34586 SRR32125140 SRX27471505 SRS23895965 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALSR2   strain:not applicable|isolate:Mus musculus8|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALSR2 ALSR2 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000599-ALS_2L.R1.raw.fastq.gz L1HIK2000599-ALS_2L.R2.raw.fastq.gz fastq fastq 6660116532.0 22053366.0 L1HIK2000599 ALS 2L.R1.raw.fastq.gz 0:151 1:151 A:1719904295;C:1602243694;G:1635064406;T:1701563851;N:1340286 151 151     1719904295 1602243694 1635064406 1701563851 1340286 SRX27471505 SRS23895965 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34587 34587 SRR32125141 SRX27471504 SRS23895963 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALSR1   strain:not applicable|isolate:Mus musculus7|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALSR1 ALSR1 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000598-ALS_1L.R1.raw.fastq.gz L1HIK2000598-ALS_1L.R2.raw.fastq.gz fastq fastq 7079862708.0 23443254.0 L1HIK2000598 ALS 1L.R1.raw.fastq.gz 0:151 1:151 A:1968428953;C:1559817677;G:1595452115;T:1954743945;N:1420018 151 151     1968428953 1559817677 1595452115 1954743945 1420018 SRX27471504 SRS23895963 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34588 34588 SRR32125142 SRX27471503 SRS23895962 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALFR3   strain:not applicable|isolate:Mus musculus3|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALFR3 ALFR3 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000597-ALF_7L.R1.raw.fastq.gz L1HIK2000597-ALF_7L.R2.raw.fastq.gz fastq fastq 6496835400.0 21512700.0 L1HIK2000597 ALF 7L.R1.raw.fastq.gz 0:151 1:151 A:1770742893;C:1463124691;G:1492356914;T:1769217185;N:1393717 151 151     1770742893 1463124691 1492356914 1769217185 1393717 SRX27471503 SRS23895962 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34589 34589 SRR32125143 SRX27471502 SRS23895961 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASSR3   strain:not applicable|isolate:Mus musculus21|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASSR3 ASSR3 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000607-ASS_3L.R1.raw.fastq.gz L1HIK2000607-ASS_3L.R2.raw.fastq.gz fastq fastq 6595080228.0 21838014.0 L1HIK2000607 ASS 3L.R1.raw.fastq.gz 0:151 1:151 A:1834286994;C:1459236275;G:1500327277;T:1799900808;N:1328874 151 151     1834286994 1459236275 1500327277 1799900808 1328874 SRX27471502 SRS23895961 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34590 34590 SRR32125144 SRX27471501 SRS23895959 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ASSR2   strain:not applicable|isolate:Mus musculus20|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ASSR2 ASSR2 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000606-ASS_5L.R1.raw.fastq.gz L1HIK2000606-ASS_5L.R2.raw.fastq.gz fastq fastq 5954118448.0 19715624.0 L1HIK2000606 ASS 5L.R1.raw.fastq.gz 0:151 1:151 A:1710239263;C:1259346281;G:1304333135;T:1680020705;N:179064 151 151     1710239263 1259346281 1304333135 1680020705 179064 SRX27471501 SRS23895959 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34591 34591 SRR32125145 SRX27471500 SRS23895958 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALFR2   strain:not applicable|isolate:Mus musculus2|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALFR2 ALFR2 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000596-ALF_3L.R1.raw.fastq.gz L1HIK2000596-ALF_3L.R2.raw.fastq.gz fastq fastq 6765859114.0 22403507.0 L1HIK2000596 ALF 3L.R1.raw.fastq.gz 0:151 1:151 A:1799218020;C:1571035556;G:1612708128;T:1781335573;N:1561837 151 151     1799218020 1571035556 1612708128 1781335573 1561837 SRX27471500 SRS23895958 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
34592 34592 SRR32125146 SRX27471499 SRS23895960 SRP559870 PRJNA1215711 Transcriptome analysis of liver tissue of zebrafish PRJNA1215711 Other Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP         ALFR1   strain:not applicable|isolate:Mus musculus1|breed:not applicable|age:4 months|collection date:2024 10 30|geo loc name:China: Qing dao|sex:male|tissue:Liver|BioSampleModel:Model organism or animal                 RNA Seq of mus musculus: adult zebrafish ALFR1 ALFR1 Transcriptome analysis of liver tissue of exposed adult zebrafish post leaching by TWP     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq X Plus   SRP559870     L1HIK2000595-ALF_1L.R1.raw.fastq.gz L1HIK2000595-ALF_1L.R2.raw.fastq.gz fastq fastq 6531913908.0 21628854.0 L1HIK2000595 ALF 1L.R1.raw.fastq.gz 0:151 1:151 A:1777990076;C:1472302889;G:1509919270;T:1770279081;N:1422592 151 151     1777990076 1472302889 1509919270 1770279081 1422592 SRX27471499 SRS23895960 SRA2060388 Qingdao University of Science and technology|College of biological engineering Qingdao University of Science and technology                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-01-25 Adult Adult Liver Liver and Biliary System
36200 36200 SRR33473362 SRX28708818 SRS24974884 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA63 1   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA1 for 63 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA63 1 PFBA63 1 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     63-L-1000-1_1.fq.gz 63-L-1000-1_2.fq.gz fastq fastq 7151526600.0 23838422.0 63 L 1000 1 1.fq.gz 0:150 1:150 A:1976607137;C:1609741742;G:1611433703;T:1953622914;N:121104 150 150     1976607137 1609741742 1611433703 1953622914 121104 SRX28708818 SRS24974884 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36201 36201 SRR33473363 SRX28708817 SRS24974883 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA35 3   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA3 for 35 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA35 3 PFBA35 3 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     35-L-1000-5_1.fq.gz 35-L-1000-5_2.fq.gz fastq fastq 6319862100.0 21066207.0 35 L 1000 5 1.fq.gz 0:150 1:150 A:1700680431;C:1454874475;G:1467874347;T:1695558513;N:874334 150 150     1700680431 1454874475 1467874347 1695558513 874334 SRX28708817 SRS24974883 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36202 36202 SRR33473364 SRX28708816 SRS24974882 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA35 2   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA2 for 35 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA35 2 PFBA35 2 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     35-L-1000-4_1.fq.gz 35-L-1000-4_2.fq.gz fastq fastq 6386095200.0 21286984.0 35 L 1000 4 1.fq.gz 0:150 1:150 A:1717874057;C:1474107143;G:1480046035;T:1713958609;N:109356 150 150     1717874057 1474107143 1480046035 1713958609 109356 SRX28708816 SRS24974882 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36203 36203 SRR33473365 SRX28708815 SRS24974881 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA35 1   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA1 for 35 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA35 1 PFBA35 1 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     35-L-1000-3_1.fq.gz 35-L-1000-3_2.fq.gz fastq fastq 8301919800.0 27673066.0 35 L 1000 3 1.fq.gz 0:150 1:150 A:2245362578;C:1916289188;G:1913847066;T:2226279890;N:141078 150 150     2245362578 1916289188 1913847066 2226279890 141078 SRX28708815 SRS24974881 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36204 36204 SRR33473366 SRX28708814 SRS24974880 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA7 3   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA3 for 7 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA7 3 PFBA7 3 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-1000-6_1.fq.gz 7-L-1000-6_2.fq.gz fastq fastq 6718293000.0 22394310.0 7 L 1000 6 1.fq.gz 0:150 1:150 A:1804530515;C:1556416298;G:1569841357;T:1787396395;N:108435 150 150     1804530515 1556416298 1569841357 1787396395 108435 SRX28708814 SRS24974880 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36205 36205 SRR33473367 SRX28708813 SRS24974879 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA7 2   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA2 for 7 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA7 2 PFBA7 2 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-1000-2_1.fq.gz 7-L-1000-2_2.fq.gz fastq fastq 6614350200.0 22047834.0 7 L 1000 2 1.fq.gz 0:150 1:150 A:1790500209;C:1517457668;G:1524299145;T:1781420711;N:672467 150 150     1790500209 1517457668 1524299145 1781420711 672467 SRX28708813 SRS24974879 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36206 36206 SRR33473368 SRX28708812 SRS24974878 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA7 1   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA1 for 7 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA7 1 PFBA7 1 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-1000-1_1.fq.gz 7-L-1000-1_2.fq.gz fastq fastq 6331390500.0 21104635.0 7 L 1000 1 1.fq.gz 0:150 1:150 A:1691391509;C:1476163786;G:1481305807;T:1682422156;N:107242 150 150     1691391509 1476163786 1481305807 1682422156 107242 SRX28708812 SRS24974878 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36207 36207 SRR33473369 SRX28708811 SRS24974877 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         Con 3   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:control3|BioSampleModel:Model organism or animal                 RNAseq of zebrafish Con 3 Con 3 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-0-3_1.fq.gz 7-L-0-3_2.fq.gz fastq fastq 6134754300.0 20449181.0 7 L 0 3 1.fq.gz 0:150 1:150 A:1684569786;C:1380732307;G:1403315019;T:1666031390;N:105798 150 150     1684569786 1380732307 1403315019 1666031390 105798 SRX28708811 SRS24974877 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36208 36208 SRR33473370 SRX28708810 SRS24974876 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA63 3   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA3 for 63 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA63 3 PFBA63 3 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     63-L-1000-5_1.fq.gz 63-L-1000-5_2.fq.gz fastq fastq 6622494600.0 22074982.0 63 L 1000 5 1.fq.gz 0:150 1:150 A:1783882745;C:1532475775;G:1540127009;T:1765378179;N:630892 150 150     1783882745 1532475775 1540127009 1765378179 630892 SRX28708810 SRS24974876 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36209 36209 SRR33473371 SRX28708809 SRS24974875 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         PFBA63 2   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:1000nM PFBA2 for 63 days|BioSampleModel:Model organism or animal                 RNAseq of zebrafish PFBA63 2 PFBA63 2 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     63-L-1000-3_1.fq.gz 63-L-1000-3_2.fq.gz fastq fastq 6154923300.0 20516411.0 63 L 1000 3 1.fq.gz 0:150 1:150 A:1773286514;C:1309949963;G:1316560184;T:1752757548;N:2369091 150 150     1773286514 1309949963 1316560184 1752757548 2369091 SRX28708809 SRS24974875 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36210 36210 SRR33473372 SRX28708808 SRS24974874 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         Con 2   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:control2|BioSampleModel:Model organism or animal                 RNAseq of zebrafish Con 2 Con 2 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-0-2_1.fq.gz 7-L-0-2_2.fq.gz fastq fastq 5902649100.0 19675497.0 7 L 0 2 1.fq.gz 0:150 1:150 A:1607666871;C:1345892291;G:1361281939;T:1587706522;N:101477 150 150     1607666871 1345892291 1361281939 1587706522 101477 SRX28708808 SRS24974874 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
36211 36211 SRR33473373 SRX28708807 SRS24974873 SRP583878 PRJNA1260177 Danio rerio strain:AB Raw sequence reads PRJNA1260177 Whole Genome Sequencing Normal sequencing of zebrafish's liver post acute and chronic of PFBA exposure         Con 1   strain:AB|age:6mpf|dev stage:adult|collection date:not applicable|geo loc name:China: Ningbo|sex:male|tissue:liver|treatment:control1|BioSampleModel:Model organism or animal                 RNAseq of zebrafish Con 1 Con 1 Normal RNA seq of zebrafish     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP583878     7-L-0-1_1.fq.gz 7-L-0-1_2.fq.gz fastq fastq 7158642900.0 23862143.0 7 L 0 1 1.fq.gz 0:150 1:150 A:2009467836;C:1579558106;G:1583929199;T:1985564094;N:123665 150 150     2009467836 1579558106 1583929199 1985564094 123665 SRX28708807 SRS24974873 SRA2125834 Ningbo University|College of marine science Ningbo University                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2025-05-08 Adult Adult Liver Liver and Biliary System
65688 65688 SRR15521452 SRX11820229 SRS9834724 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1b AL 1   breed:AB ZFIN ID: ZDB GENO 960809 16|age:1 year|sex:male|tissue:liver|genotype:leg1b mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1b AL 1 leg1b AL 1 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1b_AL_1_1.fq.gz leg1b_AL_1_2.fq.gz fastq fastq 6780217500.0 22600725.0 leg1b AL 1 1.fq.gz 0:150 1:150 A:1812918438;C:1589250278;G:1580208895;T:1796852467;N:987422 150 150     1812918438 1589250278 1580208895 1796852467 987422 SRX11820229 SRS9834724 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96715 0.9672 0.03405 0.03404 0.82704 0.82769 0.53605 0.53545 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65689 65689 SRR15521453 SRX11820228 SRS9834723 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1a AL 3   breed:AB ZFIN ID: ZDB GENO 960809 15|age:1 year|sex:male|tissue:liver|genotype:leg1a mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1a AL 3 leg1a AL 3 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1a_AL_3_1.fq.gz leg1a_AL_3_2.fq.gz fastq fastq 6283124400.0 20943748.0 leg1a AL 3 1.fq.gz 0:150 1:150 A:1675191766;C:1474804747;G:1471701599;T:1660378054;N:1048234 150 150     1675191766 1474804747 1471701599 1660378054 1048234 SRX11820228 SRS9834723 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96649 0.96639 0.03173 0.03195 0.83491 0.83382 0.57964 0.58122 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65690 65690 SRR15521454 SRX11820227 SRS9834722 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1a AL 2   breed:AB ZFIN ID: ZDB GENO 960809 14|age:1 year|sex:male|tissue:liver|genotype:leg1a mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1a AL 2 leg1a AL 2 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1a_AL_2_1.fq.gz leg1a_AL_2_2.fq.gz fastq fastq 6784264200.0 22614214.0 leg1a AL 2 1.fq.gz 0:150 1:150 A:1813737105;C:1587054272;G:1584018183;T:1798648048;N:806592 150 150     1813737105 1587054272 1584018183 1798648048 806592 SRX11820227 SRS9834722 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96477 0.96436 0.03071 0.03085 0.83609 0.83577 0.51453 0.5118 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65691 65691 SRR15521455 SRX11820226 SRS9834720 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1a AL 1   breed:AB ZFIN ID: ZDB GENO 960809 13|age:1 year|sex:male|tissue:liver|genotype:leg1a mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1a AL 1 leg1a AL 1 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1a_AL_1_1.fq.gz leg1a_AL_1_2.fq.gz fastq fastq 6695455200.0 22318184.0 leg1a AL 1 1.fq.gz 0:150 1:150 A:1778555167;C:1576785547;G:1574414573;T:1764607791;N:1092122 150 150     1778555167 1576785547 1574414573 1764607791 1092122 SRX11820226 SRS9834720 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96694 0.96733 0.02749 0.02739 0.8435 0.84315 0.56661 0.5715 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65692 65692 SRR15521456 SRX11820225 SRS9834719 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         dm AL 3   breed:AB ZFIN ID: ZDB GENO 960809 12|age:1 year|sex:male|tissue:liver|genotype:leg1 double mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver dm AL 3 dm AL 3 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     dm_AL_3_1.fq.gz dm_AL_3_2.fq.gz fastq fastq 6727153800.0 22423846.0 dm AL 3 1.fq.gz 0:150 1:150 A:1772622668;C:1600044630;G:1601402529;T:1751928237;N:1155736 150 150     1772622668 1600044630 1601402529 1751928237 1155736 SRX11820225 SRS9834719 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96448 0.96531 0.0279 0.0281 0.83865 0.83824 0.57203 0.57373 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65693 65693 SRR15521457 SRX11820224 SRS9834717 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         dm AL 2   breed:AB ZFIN ID: ZDB GENO 960809 11|age:1 year|sex:male|tissue:liver|genotype:leg1 double mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver dm AL 2 dm AL 2 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     dm_AL_2_1.fq.gz dm_AL_2_2.fq.gz fastq fastq 6161271900.0 20537573.0 dm AL 2 1.fq.gz 0:150 1:150 A:1615339600;C:1471190861;G:1469121515;T:1604656171;N:963753 150 150     1615339600 1471190861 1469121515 1604656171 963753 SRX11820224 SRS9834717 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.97011 0.97064 0.02519 0.02503 0.83382 0.8337 0.57505 0.57661 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65694 65694 SRR15521458 SRX11820223 SRS9834721 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         dm AL 1   breed:AB ZFIN ID: ZDB GENO 960809 10|age:1 year|sex:male|tissue:liver|genotype:leg1 double mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver dm AL 1 dm AL 1 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     dm_AL_1_1.fq.gz dm_AL_1_2.fq.gz fastq fastq 7914064800.0 26380216.0 dm AL 1 1.fq.gz 0:150 1:150 A:2106219609;C:1864816063;G:1855463312;T:2086170078;N:1395738 150 150     2106219609 1864816063 1855463312 2086170078 1395738 SRX11820223 SRS9834721 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96635 0.96704 0.03318 0.0328 0.82696 0.82603 0.5885 0.58919 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65695 65695 SRR15521459 SRX11820222 SRS9834715 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         AB AL 3   breed:AB ZFIN ID: ZDB GENO 960809 9|age:1 year|sex:male|tissue:liver|genotype:WT|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver AB AL 3 AB AL 3 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     AB_AL_3_1.fq.gz AB_AL_3_2.fq.gz fastq fastq 6259412700.0 20864709.0 AB AL 3 1.fq.gz 0:150 1:150 A:1647790347;C:1488216613;G:1489036903;T:1633398844;N:969993 150 150     1647790347 1488216613 1489036903 1633398844 969993 SRX11820222 SRS9834715 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.95556 0.95616 0.03113 0.03091 0.83911 0.83954 0.56901 0.56746 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65696 65696 SRR15521460 SRX11820221 SRS9834716 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1b AL 3   breed:AB ZFIN ID: ZDB GENO 960809 18|age:1 year|sex:male|tissue:liver|genotype:leg1b mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1b AL 3 leg1b AL 3 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1b_AL_3_1.fq.gz leg1b_AL_3_2.fq.gz fastq fastq 6935155800.0 23117186.0 leg1b AL 3 1.fq.gz 0:150 1:150 A:1850145107;C:1630214226;G:1622869178;T:1830893157;N:1034132 150 150     1850145107 1630214226 1622869178 1830893157 1034132 SRX11820221 SRS9834716 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96737 0.96741 0.03552 0.03553 0.83179 0.83264 0.59362 0.59121 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65697 65697 SRR15521461 SRX11820220 SRS9834718 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         leg1b AL 2   breed:AB ZFIN ID: ZDB GENO 960809 17|age:1 year|sex:male|tissue:liver|genotype:leg1b mu|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver leg1b AL 2 leg1b AL 2 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     leg1b_AL_2_1.fq.gz leg1b_AL_2_2.fq.gz fastq fastq 6422275500.0 21407585.0 leg1b AL 2 1.fq.gz 0:150 1:150 A:1723030323;C:1501898898;G:1491848143;T:1704357954;N:1140182 150 150     1723030323 1501898898 1491848143 1704357954 1140182 SRX11820220 SRS9834718 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.96659 0.96609 0.03776 0.03761 0.81331 0.81355 0.58988 0.57907 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65698 65698 SRR15521462 SRX11820219 SRS9834714 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         AB AL 2   breed:AB ZFIN ID: ZDB GENO 960809 8|age:1 year|sex:male|tissue:liver|genotype:WT|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver AB AL 2 AB AL 2 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     AB_AL_2_1.fq.gz AB_AL_2_2.fq.gz fastq fastq 6809423400.0 22698078.0 AB AL 2 1.fq.gz 0:150 1:150 A:1795191417;C:1617821913;G:1618307871;T:1777198137;N:904062 150 150     1795191417 1617821913 1618307871 1777198137 904062 SRX11820219 SRS9834714 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.95733 0.95785 0.02711 0.02704 0.83512 0.83433 0.55846 0.5213 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
65699 65699 SRR15521463 SRX11820218 SRS9834713 SRP333177 PRJNA756054 the liver of the adult male zebrafish transcriptome PRJNA756054 Other RNA seq data of the liver of the adult male WT leg1a mu leg1b mu and leg1 double MZ mutant fish         AB AL 1   breed:AB ZFIN ID: ZDB GENO 960809 7|age:1 year|sex:male|tissue:liver|genotype:WT|sample type:total RNA|BioSampleModel:Model organism or animal                 RNA seq of Danio rerio:adult male liver AB AL 1 AB AL 1 common method     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP333177     AB_AL_1_1.fq.gz AB_AL_1_2.fq.gz fastq fastq 6777487500.0 22591625.0 AB AL 1 1.fq.gz 0:150 1:150 A:1783098822;C:1612380952;G:1613571210;T:1767547411;N:889105 150 150     1783098822 1612380952 1613571210 1767547411 889105 SRX11820218 SRS9834713 SRA1280416 Zhejiang University|College of Animal Sciences Zhejiang University 2 0.95297 0.95373 0.02699 0.02732 0.83743 0.83796 0.54277 0.52496 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-08-19 Adult Adult Liver Liver and Biliary System
66712 66712 SRR16388444 SRX12665891 SRS10618107 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       VD group3 VD3   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:6|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells VD3 VD3 Zebrafish liver cells were cultured in 1 25OH2D3 medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     VD3.R1.raw.fastq.gz VD3.R2.raw.fastq.gz fastq fastq 6220654588.0 20598194.0 VD3.R1.raw.fastq.gz 0:151 1:151 A:1552134393;C:1550343756;G:1593562676;T:1524575841;N:37922 151 151     1552134393 1550343756 1593562676 1524575841 37922 SRX12665891 SRS10618107 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.96344 0.96379 0.0221 0.022 0.831 0.83112 0.53864 0.54201 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
66713 66713 SRR16388445 SRX12665890 SRS10618106 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       VD group2 VD2   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:5|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells VD2 VD2 Zebrafish liver cells were cultured in 1 25OH2D3 medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     VD2.R1.raw.fastq.gz VD2.R2.raw.fastq.gz fastq fastq 6530177106.0 21623103.0 VD2.R1.raw.fastq.gz 0:151 1:151 A:1644196315;C:1615355341;G:1655706450;T:1614879178;N:39822 151 151     1644196315 1615355341 1655706450 1614879178 39822 SRX12665890 SRS10618106 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.9624 0.96201 0.02624 0.02664 0.82639 0.82595 0.54138 0.54722 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
66714 66714 SRR16388446 SRX12665889 SRS10618105 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       VD group1 VD1   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:4|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells VD1 VD1 Zebrafish liver cells were cultured in 1 25OH2D3 medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     VD1.R1.raw.fastq.gz VD1.R2.raw.fastq.gz fastq fastq 6135645212.0 20316706.0 VD1.R1.raw.fastq.gz 0:151 1:151 A:1517679787;C:1541844646;G:1588735828;T:1487347445;N:37506 151 151     1517679787 1541844646 1588735828 1487347445 37506 SRX12665889 SRS10618105 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.97242 0.97277 0.0141 0.01437 0.86507 0.86444 0.53836 0.53719 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
66715 66715 SRR16388447 SRX12665888 SRS10618104 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       Ctrl group3 Ctrl3   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:3|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells Ctrl3 Ctrl3 Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     ctrl3.R1.raw.fastq.gz ctrl3.R2.raw.fastq.gz fastq fastq 6375132722.0 21109711.0 ctrl3.R1.raw.fastq.gz 0:151 1:151 A:1568066061;C:1611914617;G:1659123863;T:1535989779;N:38402 151 151     1568066061 1611914617 1659123863 1535989779 38402 SRX12665888 SRS10618104 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.97096 0.97074 0.01508 0.01511 0.84624 0.84559 0.5361 0.53476 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
66716 66716 SRR16388448 SRX12665887 SRS10618103 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       Ctrl group2 Ctrl2   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:2|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells Ctrl2 Ctrl2 Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     ctrl.2.R2.raw.fastq.gz ctrl.2.R1.raw.fastq.gz fastq fastq 6734221594.0 22298747.0 ctrl.2.R1.raw.fastq.gz 0:151 1:151 A:1659423115;C:1702751284;G:1747325583;T:1624676257;N:45355 151 151     1659423115 1702751284 1747325583 1624676257 45355 SRX12665887 SRS10618103 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.97027 0.97042 0.01507 0.01522 0.85048 0.8506 0.52102 0.52865 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
66717 66717 SRR16388449 SRX12665886 SRS10618102 SRP341856 PRJNA772154 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells PRJNA772154 Other We used zebrafish liver cells to establish ferroptosis model to explore the effect of 1 25OH2D3 on cell ferroptosis and its mechanism of action. The objective of this study was to investigate whether 1 25OH2D3 inhibits RSL3 induced ferroptosis in zebrafish liver cells by means of the Keap1 Nrf2 GPx4 and NF kappa B hepcidin axis.       Ctrl group1 Ctrl1   isolate:not applicable|dev stage:78h|sex:not applicable|tissue:liver cell line|id:1|BioSampleModel:Model organism or animal                 Effects of 1 25OH2D3 on RSL3 induced ferroptosis of zebrafish liver cells Ctrl1 Ctrl1 Zebrafish liver cells were cultured in normal medium for 72h and then stimulated with RSL3 for 6 h     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP341856     ctrl1.R1.raw.fastq.gz ctrl1.R2.raw.fastq.gz fastq fastq 6981192966.0 23116533.0 ctrl1.R1.raw.fastq.gz 0:151 1:151 A:1775334598;C:1706780136;G:1746486836;T:1752547922;N:43474 151 151     1775334598 1706780136 1746486836 1752547922 43474 SRX12665886 SRS10618102 SRA1312474 Huazhong Agriculture University|College of fisheries Huazhong Agriculture University 2 0.91804 0.91751 0.03131 0.03133 0.80405 0.80381 0.51561 0.52372 151 151 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2021-10-18 Larval Larval Liver Liver and Biliary System
68994 68994 SRR18297395 SRX14434915 SRS12255281 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf     Alcohol treated zebrafish liver samples   J3 1   dev stage:120 hpf treated zebrafish liver samples|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver J3 1 J3 1 Alcohol treated zebrafish liver samples     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     J3_1.fq.gz J3_2.fq.gz fastq fastq 8647171800.0 28823906.0 J3 1.fq.gz 0:150 1:150 A:2296724414;C:1995187845;G:2043048487;T:2312145518;N:65536 150 150     2296724414 1995187845 2043048487 2312145518 65536 SRX14434915 SRS12255281 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.89619 0.89798 0.0254 0.02563 0.83153 0.83615 0.47241 0.46832 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
68995 68995 SRR18297396 SRX14434914 SRS12255280 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf     Alcohol treated zebrafish liver samples   J2 1   dev stage:120 hpf treated zebrafish liver samples|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver J2 1 J2 1 Alcohol treated zebrafish liver samples     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     J2_1.fq.gz J2_2.fq.gz fastq fastq 9314174700.0 31047249.0 J2 1.fq.gz 0:150 1:150 A:2444730873;C:2184328392;G:2228421762;T:2456623825;N:69848 150 150     2444730873 2184328392 2228421762 2456623825 69848 SRX14434914 SRS12255280 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.89241 0.89026 0.024 0.02416 0.80927 0.81282 0.45886 0.40104 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
68996 68996 SRR18297397 SRX14434913 SRS12255279 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf     Zebrafish liver sample control   C5 1   dev stage:120 hpf liver sample control|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver C5 1 C5 1 Zebrafish liver sample control     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     C5_1.fq.gz C5_2.fq.gz fastq fastq 9503751300.0 31679171.0 C5 1.fq.gz 0:150 1:150 A:2498365682;C:2221848024;G:2265606694;T:2517861109;N:69791 150 150     2498365682 2221848024 2265606694 2517861109 69791 SRX14434913 SRS12255279 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.93657 0.93483 0.02408 0.0238 0.82739 0.83236 0.47026 0.46738 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
68997 68997 SRR18297398 SRX14434912 SRS12255278 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf     Alcohol treated zebrafish liver samples   J1 1   dev stage:120 hpf treated zebrafish liver samples|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver J1 1 J1 1 Alcohol treated zebrafish liver samples     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     J1_1.fq.gz J1_2.fq.gz fastq fastq 7642427700.0 25474759.0 J1 1.fq.gz 0:150 1:150 A:2016068276;C:1782002629;G:1813618344;T:2030680560;N:57891 150 150     2016068276 1782002629 1813618344 2030680560 57891 SRX14434912 SRS12255278 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.92256 0.92242 0.02832 0.02783 0.81509 0.8199 0.44651 0.45154 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
68998 68998 SRR18297399 SRX14434911 SRS12255277 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf         C4 1   dev stage:120 hpf liver sample control|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver C4 1 C4 1 Zebrafish liver sample control     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     C4_1.fq.gz C4_2.fq.gz fastq fastq 9160807800.0 30536026.0 C4 1.fq.gz 0:150 1:150 A:2382503488;C:2176652188;G:2211337070;T:2390247699;N:67355 150 150     2382503488 2176652188 2211337070 2390247699 67355 SRX14434911 SRS12255277 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.91252 0.91151 0.02021 0.02016 0.8341 0.83767 0.45623 0.4575 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
68999 68999 SRR18297400 SRX14434910 SRS12255276 SRP363531 PRJNA814446 Danio rerio Raw sequence reads PRJNA814446 Whole Genome Sequencing To study the effect of alcohol treatment on zebrafish liver 120 hpf     Zebrafish liver sample control   C2 1   dev stage:120 hpf liver sample control|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal                 RNA seq of zebrafish liver C2 1 C2 1 Zebrafish liver sample control     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP363531     C2_1.fq.gz C2_2.fq.gz fastq fastq 10828705800.0 36095686.0 C2 1.fq.gz 0:150 1:150 A:2815973271;C:2569625906;G:2605881479;T:2837143114;N:82030 150 150     2815973271 2569625906 2605881479 2837143114 82030 SRX14434910 SRS12255276 SRA1383595 Inner Mongolia University For Nationalities|College of animal science and technology Inner Mongolia University For Nationalities 2 0.92403 0.92285 0.02121 0.02101 0.82284 0.82706 0.47687 0.46476 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-03-11 Larval Larval Liver Liver and Biliary System
70225 70225 SRR19627917 SRX15678474 SRS13376477 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         9 FAC hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:3 0.1% O2 with FAC supplementation|BioSampleModel:Model organism or animal                 FAC hypoxia 3 FAC hypoxia 3 FAC hypoxia 3 supplemrntation with FAC and hypoxia for 5d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     FAC_hypoxia-3.R1.fastq.gz FAC_hypoxia-3.R2.fastq.gz fastq fastq 6380199000.0 21267330.0 FAC hypoxia 3.R1.fastq.gz 0:150 1:150 A:1671433136;C:1499373647;G:1576679120;T:1632651556;N:61541 150 150     1671433136 1499373647 1576679120 1632651556 61541 SRX15678474 SRS13376477 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95363 0.95459 0.05881 0.05873 0.76631 0.76577 0.53835 0.52835 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70226 70226 SRR19627918 SRX15678473 SRS13376476 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         8 FAC hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:2 0.1% O2 with FAC supplementation|BioSampleModel:Model organism or animal                 FAC hypoxia 2 FAC hypoxia 2 FAC hypoxia 2 supplemrntation with FAC and hypoxia for 4d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     FAC_hypoxia-2.R1.fastq.gz FAC_hypoxia-2.R2.fastq.gz fastq fastq 6101829600.0 20339432.0 FAC hypoxia 2.R1.fastq.gz 0:150 1:150 A:1574893595;C:1454868394;G:1547239872;T:1524768201;N:59538 150 150     1574893595 1454868394 1547239872 1524768201 59538 SRX15678473 SRS13376476 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95634 0.95739 0.05342 0.05362 0.76881 0.76749 0.53034 0.53011 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70227 70227 SRR19627919 SRX15678472 SRS13376475 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         7 FAC hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:1 0.1% O2 with FAC supplementation|BioSampleModel:Model organism or animal                 FAC hypoxia 1 FAC hypoxia 1 FAC hypoxia 1 supplemrntation with FAC and hypoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     FAC_hypoxia-1.R1.fastq.gz FAC_hypoxia-1.R2.fastq.gz fastq fastq 6414187800.0 21380626.0 FAC hypoxia 1.R1.fastq.gz 0:150 1:150 A:1641953069;C:1546854359;G:1629263103;T:1596055004;N:62265 150 150     1641953069 1546854359 1629263103 1596055004 62265 SRX15678472 SRS13376475 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95903 0.9597 0.0736 0.0737 0.7723 0.77045 0.54827 0.55406 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70228 70228 SRR19627920 SRX15678471 SRS13376474 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         6 WT hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:3 0.1% O2|BioSampleModel:Model organism or animal                 WT hypoxia 3 WT hypoxia 3 WT hypoxia 3 hypoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_hypoxia-3.R1.fastq.gz WT_hypoxia-3.R2.fastq.gz fastq fastq 6841301400.0 22804338.0 WT hypoxia 3.R1.fastq.gz 0:150 1:150 A:1750979097;C:1640750395;G:1756510566;T:1692995648;N:65694 150 150     1750979097 1640750395 1756510566 1692995648 65694 SRX15678471 SRS13376474 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95521 0.95574 0.05844 0.05863 0.76889 0.76745 0.52412 0.5208 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70229 70229 SRR19627921 SRX15678470 SRS13376473 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         5 WT hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:2 0.1% O2|BioSampleModel:Model organism or animal                 WT hypoxia 2 WT hypoxia 2 WT hypoxia 2 hypoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_hypoxia-2.R1.fastq.gz WT_hypoxia-2.R2.fastq.gz fastq fastq 7296870000.0 24322900.0 WT hypoxia 2.R1.fastq.gz 0:150 1:150 A:1872215969;C:1749380281;G:1856930287;T:1818277482;N:65981 150 150     1872215969 1749380281 1856930287 1818277482 65981 SRX15678470 SRS13376473 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95541 0.95711 0.05508 0.05529 0.77528 0.77498 0.52698 0.52686 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70230 70230 SRR19627922 SRX15678469 SRS13376472 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         4 WT hypoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:1 0.1% O2|BioSampleModel:Model organism or animal                 WT hypoxia 1 WT hypoxia 1 WT hypoxia 1 hypoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_hypoxia-1.R1.fastq.gz WT_hypoxia-1.R2.fastq.gz fastq fastq 6122333700.0 20407779.0 WT hypoxia 1.R1.fastq.gz 0:150 1:150 A:1596743120;C:1445830065;G:1529572290;T:1550128482;N:59743 150 150     1596743120 1445830065 1529572290 1550128482 59743 SRX15678469 SRS13376472 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.9487 0.94932 0.06381 0.0636 0.75883 0.75856 0.52097 0.52495 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70231 70231 SRR19627923 SRX15678468 SRS13376471 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         3 WT normoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:3 21% O2|BioSampleModel:Model organism or animal                 WT normoxia 3 WT normoxia 3 WT normoxia 3 normoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_normoxia-3.R1.fastq.gz WT_normoxia-3.R2.fastq.gz fastq fastq 6129969300.0 20433231.0 WT normoxia 3.R1.fastq.gz 0:150 1:150 A:1603815001;C:1446155900;G:1518644535;T:1561242175;N:111689 150 150     1603815001 1446155900 1518644535 1561242175 111689 SRX15678468 SRS13376471 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.9511 0.94975 0.06489 0.06398 0.75653 0.75832 0.5219 0.51649 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70232 70232 SRR19627924 SRX15678467 SRS13376470 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         2 WT normoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:2 21% O2|BioSampleModel:Model organism or animal                 WT normoxia 2 WT normoxia 2 WT normoxia 2 normoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_normoxia-2.R1.fastq.gz WT_normoxia-2.R2.fastq.gz fastq fastq 6477041700.0 21590139.0 WT normoxia 2.R1.fastq.gz 0:150 1:150 A:1689277340;C:1533072440;G:1600344997;T:1654227811;N:119112 150 150     1689277340 1533072440 1600344997 1654227811 119112 SRX15678467 SRS13376470 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.95025 0.9486 0.06318 0.06262 0.75816 0.75933 0.49794 0.50063 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System
70233 70233 SRR19627925 SRX15678466 SRS13376469 SRP379658 PRJNA848069 Transcriptome analysis of ZFL cells PRJNA848069 Other the transcriptome analysis of ZFL zebrafish liver cells under hypoxia stress         1 WT normoxia   isolate:liver cell|dev stage:mature|sex:pooled male and female|tissue:liver|cell line:ZFL|sample type:cell culture|treatment:1 21% O2|BioSampleModel:Model organism or animal                 WT normoxia 1 WT normoxia 1 WT normoxia 1 normoxia for 3d     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA Illumina NovaSeq 6000   SRP379658     WT_normoxia-1.R1.fastq.gz WT_normoxia-1.R2.fastq.gz fastq fastq 7612447200.0 25374824.0 WT normoxia 1.R1.fastq.gz 0:150 1:150 A:1995483560;C:1776838669;G:1907898454;T:1932088660;N:137857 150 150     1995483560 1776838669 1907898454 1932088660 137857 SRX15678466 SRS13376469 SRA1435736 SHANGHAI OCEAN UNIVERSITY|College of Fisheries and Life Science SHANGHAI OCEAN UNIVERSITY 2 0.94638 0.94688 0.06242 0.06151 0.76506 0.76524 0.53233 0.53157 150 150 B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2022-06-11 Undetermined Undetermined Liver Liver and Biliary System

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;