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914 rows where devstage_curation_coarse = "Undetermined" and tissue_curation_coarse = "Undetermined"

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experiment.library_selection 8

experiment.platform 5

technology 4

experiment.library_strategy 3

experiment.library_layout 2

tissue_curation_coarse 1

  • Undetermined · 914 ✖

tissue_curation 1

experiment.library_source 1

devstage_curation_coarse 1

  • Undetermined · 914 ✖

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
9918 9918 ERR5059480 ERX4865549 ERS5523939 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05     aAM 6h rep1 JD AD30 PRPN1970901   ENA FIRST PUBLIC:2022 07 05T12:06:33Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:33Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AD30_PRPN197090.tar.gz nanopore 3739882337.0 3148027.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 09 01 2021 19:50:56:183 1 0:1188.01 A:1054501690;C:834193435;G:847423060;T:1003764152;N:0 1188       1054501690 834193435 847423060 1003764152 0 ERX4865549 ERS5523939 ERA3206712 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       B   usable mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9920 9920 ERR4330695 ERX4277529 ERS4811113 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 2h rep1 WT 2h rep1 SAMEA7050483 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7050483|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD B2 PDBN005727|common name:zebrafish|sample name:JD B2 PDBN005727                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-B2_PDBN005727.tar.gz fastq     ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 1                       ERX4277529   ERA2767154 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                             ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9921 9921 ERR4327134 ERX4273968 ERS4808634 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 4h rep2 WT 4h rep2 SAMEA7048000 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7048000|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD AM39 PDBN042841|common name:zebrafish|sample name:JD AM39 PDBN042841                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AM39_PDBN042841.tar.gz nanopore 719646261.0 897768.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 1 0:801.59 A:210217908;C:152963718;G:157393834;T:199070801;N:0 801       210217908 152963718 157393834 199070801 0 ERX4273968 ERS4808634 ERA2764800 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9922 9922 ERR4330696 ERX4277530 ERS4811114 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 4h rep1 WT 4h rep1 JD C3 PDBN006177   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-C3_PDBN006177.tar.gz nanopore 4240799932.0 4331689.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 09 07 2020 13:48:01:100 2 0:979.02 A:1229803846;C:914476674;G:943703560;T:1152815852;N:0 979       1229803846 914476674 943703560 1152815852 0 ERX4277530 ERS4811114 ERA2767154 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       B   usable mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9923 9923 ERR4327135 ERX4273969 ERS4808635 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 6h rep1 WT 6h rep1 JD AC29 PDBN024889   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-AC29_PDBN024889.tar.gz nanopore 1900324756.0 2013035.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 16:36:02:084 2 0:944.01 A:549431032;C:411510218;G:422103800;T:517279706;N:0 944       549431032 411510218 422103800 517279706 0 ERX4273969 ERS4808635 ERA2764800 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   long read ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9924 9924 ERR4326350 ERX4273208 ERS4808398 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   430 LNA 6h rep1 430 LNA 6h rep1 SAMEA7047764 CENTER FOR GENOMIC REGULATION (CRG) ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05|External Id:SAMEA7047764|INSDC center alias:CENTER FOR GENOMIC REGULATION CRG|INSDC center name:CENTER FOR GENOMIC REGULATION CRG|INSDC first public:2022 07 05T12:06:22Z|INSDC last update:2022 07 05T12:06:22Z|INSDC status:public|Submitter Id:JD H8 PDBN059569|common name:zebrafish|sample name:JD H8 PDBN059569                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-H8_PDBN059569.tar.gz nanopore 722817654.0 657296.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 07 07 2020 10:25:22:388 1 0:1099.68 A:206996491;C:157022109;G:155085437;T:203713617;N:0 1099       206996491 157022109 155085437 203713617 0 ERX4273208 ERS4808398 ERA2764399 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9925 9925 ERR4335436 ERX4282181 ERS4818366 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 6h rep2 WT 6h rep2 JD W23 PRPN039928   ENA FIRST PUBLIC:2022 07 05T12:06:24Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:24Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 PromethION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:456 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE PromethION   ERP122761 PromethION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-W23_PRPN039928.tar.gz nanopore 1268761319.0 1385621.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 13 07 2020 18:19:23:457 1 0:915.66 A:366823862;C:275507684;G:284634548;T:341795225;N:0 915       366823862 275507684 284634548 341795225 0 ERX4282181 ERS4818366 ERA2769006 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   under 1.2% mapping rate ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
9926 9926 ERR4321680 ERX4268538 ERS4808125 ERP122761 PRJEB39265 RNA dynamics during zebrafish development ena-STUDY-CENTER FOR GENOMIC REGULATION (CRG)-06-07-2020-15:41:43:771-1183 Other RNA dynamics during early zebrafish development ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05   WT 0h rep1 WT 0h rep1 JD A1 GDDN003032   ENA FIRST PUBLIC:2022 07 05T12:06:22Z|organism:Danio rerio|ENA LAST UPDATE:2022 07 05T12:06:22Z|scientific name:Danio rerio|common name:zebrafish|ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05                 GridION sequencing ena EXPERIMENT CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT SINGLE OXFORD_NANOPORE GridION   ERP122761 GridION sequencing ENA FIRST PUBLIC:2022 07 05|ENA LAST UPDATE:2022 07 05 JD-A1_GDDN003032.tar.gz nanopore 753417826.0 698774.0 ena RUN CENTER FOR GENOMIC REGULATION CRG 06 07 2020 17:45:26:236 1 0:1078.20 A:214525685;C:165042952;G:171160615;T:202688574;N:0 1078       214525685 165042952 171160615 202688574 0 ERX4268538 ERS4808125 ERA2763718 CENTER FOR GENOMIC REGULATION (CRG)|European Nucleotide Archive CENTER FOR GENOMIC REGULATION (CRG)                       T   long read ont ont unknown poly_a unknown bulk unknown unknown   Spain 2022-07-05 Undetermined Undetermined Undetermined Undetermined
10383 10383 ERR8517249 ERX8083723 ERS10517669 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Modifier control hnRNPK 003 SAMEA12918519 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918519|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:hnRNPK 003|common name:zebrafish|sample name:hnRNPK 003                 NextSeq 500 paired end sequencing; Raw reads: hnRNPK 003 webin reads hnRNPK 003   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: hnRNPK 003 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 hnRNPK_003_R1.fastq.gz hnRNPK_003_R2.fastq.gz fastq fastq 2931486932.0 19421721.0 webin reads hnRNPK 003 0:75.51 1:75.43 A:759548162;C:700272829;G:700149526;T:770783019;N:733396 75 75     759548162 700272829 700149526 770783019 733396 ERX8083723 ERS10517669 ERA8937191 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.9621 0.96378 0.06994 0.06876 0.68757 0.68998 0.46746 0.47041 76 75 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10384 10384 ERR8517226 ERX8083700 ERS10517665 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Modifier control hnRNPK 001 SAMEA12918515 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918515|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:hnRNPK 001|common name:zebrafish|sample name:hnRNPK 001                 NextSeq 500 paired end sequencing; Raw reads: hnRNPK 001 webin reads hnRNPK 001   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: hnRNPK 001 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 hnRNPK_001_R1.fastq.gz hnRNPK_001_R2.fastq.gz fastq fastq 2728299749.0 18074835.0 webin reads hnRNPK 001 0:75.51 1:75.43 A:710869412;C:649804308;G:644363972;T:722599378;N:662679 75 75     710869412 649804308 644363972 722599378 662679 ERX8083700 ERS10517665 ERA8936710 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96092 0.96336 0.07296 0.07144 0.68862 0.69209 0.47036 0.47104 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10385 10385 ERR8517194 ERX8083668 ERS10517668 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 RNA control GFP 003 SAMEA12918518 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918518|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:GFP 003|common name:zebrafish|sample name:GFP 003                 NextSeq 500 paired end sequencing; Raw reads: GFP 003 webin reads GFP 003   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: GFP 003 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 GFP_003_R1.fastq.gz GFP_003_R2.fastq.gz fastq fastq 2845571506.0 18850866.0 webin reads GFP 003 0:75.52 1:75.43 A:737412560;C:678774596;G:684567775;T:744108157;N:708418 75 75     737412560 678774596 684567775 744108157 708418 ERX8083668 ERS10517668 ERA8936242 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96279 0.96355 0.06774 0.06607 0.68864 0.69183 0.469 0.46906 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10386 10386 ERR8517159 ERX8083633 ERS10517664 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 RNA control GFP 001 SAMEA12918514 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918514|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:GFP 001|common name:zebrafish|sample name:GFP 001                 NextSeq 500 paired end sequencing; Raw reads: GFP 001 webin reads GFP 001   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: GFP 001 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 GFP_001_R1.fastq.gz GFP_001_R2.fastq.gz fastq fastq 2873485447.0 19035162.0 webin reads GFP 001 0:75.52 1:75.44 A:746120172;C:687054955;G:682142981;T:757435799;N:731540 75 75     746120172 687054955 682142981 757435799 731540 ERX8083633 ERS10517664 ERA8935703 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96176 0.96461 0.07014 0.06932 0.68672 0.68913 0.47006 0.46794 75 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10387 10387 ERR8517115 ERX8083589 ERS10517671 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Modifier rescue 91S hnRNPK 003 SAMEA12918521 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918521|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:91S hnRNPK 003|common name:zebrafish|sample name:91S hnRNPK 003                 NextSeq 500 paired end sequencing; Raw reads: 91S hnRNPK 003 webin reads 91S hnRNPK 003   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: 91S hnRNPK 003 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 91S_hnRNPK_003_R1.fastq.gz 91S_hnRNPK_003_R2.fastq.gz fastq fastq 2853403405.0 18902398.0 webin reads 91S hnRNPK 003 0:75.52 1:75.44 A:739541111;C:681340573;G:681790014;T:750013318;N:718389 75 75     739541111 681340573 681790014 750013318 718389 ERX8083589 ERS10517671 ERA8935191 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96234 0.96429 0.0679 0.06627 0.68984 0.69126 0.46434 0.47087 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10388 10388 ERR8517082 ERX8083556 ERS10517667 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Modifier rescue 91S hnRNPK 001 SAMEA12918517 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918517|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:91S hnRNPK 001|common name:zebrafish|sample name:91S hnRNPK 001                 NextSeq 500 paired end sequencing; Raw reads: 91S hnRNPK 001 webin reads 91S hnRNPK 001   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: 91S hnRNPK 001 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 91S_hnRNPK_001_R1.fastq.gz 91S_hnRNPK_001_R2.fastq.gz fastq fastq 2795603091.0 18519699.0 webin reads 91S hnRNPK 001 0:75.52 1:75.43 A:722724564;C:672552332;G:664566386;T:735058575;N:701234 75 75     722724564 672552332 664566386 735058575 701234 ERX8083556 ERS10517667 ERA8934579 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96307 0.96547 0.06551 0.06458 0.68714 0.68856 0.46817 0.46555 76 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10389 10389 ERR8517039 ERX8083513 ERS10517670 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Toxic condition 91S GFP 003 SAMEA12918520 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918520|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:91S GFP 003|common name:zebrafish|sample name:91S GFP 003                 NextSeq 500 paired end sequencing; Raw reads: 91S GFP 003 webin reads 91S GFP 003   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: 91S GFP 003 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 91S_GFP_003_R1.fastq.gz 91S_GFP_003_R2.fastq.gz fastq fastq 2946600193.0 19521826.0 webin reads 91S GFP 003 0:75.51 1:75.43 A:763284580;C:704439363;G:702989767;T:775149110;N:737373 75 75     763284580 704439363 702989767 775149110 737373 ERX8083513 ERS10517670 ERA8933888 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96151 0.96295 0.06621 0.06481 0.68807 0.69092 0.46928 0.46982 75 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
10390 10390 ERR8516998 ERX8083472 ERS10517666 ERP135370 PRJEB50765 HNRNPK alleviates RNA toxicity by counteracting DNA damage in C9orf72 ALS 69e2093b-755e-4be3-88b8-5b4a761258fe Other A 'GGGGCC' repeat expansion in the first intron of the C9orf72 gene is the most common cause of amyotrophic lateral sclerosis ALS and frontotemporal dementia FTD. The exact mechanism resulting in these neurodegenerative diseases remains elusive but RNA toxicity has been implicated as a gain of function mechanism. Our aim was to use a zebrafish model for C9orf72 RNA toxicity to identify modifiers of the ALS linked phenotype. We discovered that the RNA binding protein heterogeneous nuclear ribonucleoprotein K HNRNPK can reverse the toxicity of both sense and antisense repeat RNA which is dependent on its subcellular localization and on RNA recognition and not on C9 repeat RNA binding. We observed HNRNPK cytoplasmic mislocalization in C9orf72 ALS patient fibroblasts induced pluripotent stem cell iPSC derived motor neurons and postmortem central cortex suggesting a disrupted HNRNPK function in C9orf72 ALS. In C9 ALS/FTD patient tissue we discovered an increased nuclear translocation but reduced expression of Ribonucleotide Reductase Regulatory Subunit M2 RRM2 a downstream target of HNRNPK involved in DNA damage response. Finally we show that increasing the expression of HNRNPK or RRM2 was sufficient to mitigate DNA damage in our C9 RNA toxicity zebrafish model. Overall our study strengthens the relevance of RNA toxicity as a pathogenic mechanism in C9 ALS and demonstrates its link with aberrant DNA damage response opening novel therapeutic strategies for C9 ALS/FTD. ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 PUBMED:29302778;PUBMED:35895140 Toxic condition 91S GFP 001 SAMEA12918516 vib-ku leuven ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22|External Id:SAMEA12918516|INSDC center alias:VIB KU Leuven|INSDC center name:vib ku leuven|INSDC first public:2022 08 22T12:15:26Z|INSDC last update:2022 08 22T12:15:26Z|INSDC status:public|Submitter Id:91S GFP 001|common name:zebrafish|sample name:91S GFP 001                 NextSeq 500 paired end sequencing; Raw reads: 91S GFP 001 webin reads 91S GFP 001   unspecified     RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA NextSeq 500   ERP135370 Raw reads: 91S GFP 001 ENA FIRST PUBLIC:2022 08 22|ENA LAST UPDATE:2022 08 22 91S_GFP_001_R1.fastq.gz 91S_GFP_001_R2.fastq.gz fastq fastq 2821113913.0 18686946.0 webin reads 91S GFP 001 0:75.52 1:75.44 A:726676187;C:676899384;G:676400816;T:740427303;N:710223 75 75     726676187 676899384 676400816 740427303 710223 ERX8083472 ERS10517666 ERA8933211 vib-ku leuven|European Nucleotide Archive vib-ku leuven 2 0.96147 0.96465 0.07106 0.06991 0.68822 0.69556 0.47261 0.47451 75 76 B B biological fallback assumption illumina nextseq unknown poly_a unknown bulk unknown unknown   Belgium 2022-08-22 Undetermined Undetermined Undetermined Undetermined
21547 21547 ERR1374860 ERX1445986 ERS1036031 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281340 SAMEA3728882 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728882|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:28Z|INSDC status:public|Submitter Id:63f8d9b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTTCCAGCGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63f8d9b0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#384 15545073 Illumina sequencing of library 15545073 constructed from sample accession ERS1036031 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTTCCAGCGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#384.cram cram 284058.0 2202.0 SC RUN 18668 1#384 0:54 1:75 A:76261;C:66156;G:64128;T:77513;N:0 54 75     76261 66156 64128 77513 0 ERX1445986 ERS1036031 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.0 0.0007 0.0 0.00069 1.0 1.0     54 75 T T mates < 9% mapping rate illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21548 21548 ERR1374859 ERX1445985 ERS1036030 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281339 SAMEA3728881 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728881|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:28Z|INSDC status:public|Submitter Id:63ef8ae0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTGATTCTCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63ef8ae0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#383 15545072 Illumina sequencing of library 15545072 constructed from sample accession ERS1036030 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTGATTCTCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#383.cram cram 1304835.0 10115.0 SC RUN 18668 1#383 0:54 1:75 A:352669;C:266861;G:245412;T:439893;N:0 54 75     352669 266861 245412 439893 0 ERX1445985 ERS1036030 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.31511 0.42794 0.3151 0.42793 1.0 1.0     54 75 T B mate1 technical by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21549 21549 ERR1374858 ERX1445984 ERS1036029 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281338 SAMEA3728880 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728880|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63e21d60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTCGTGTAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63e21d60 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#382 15545071 Illumina sequencing of library 15545071 constructed from sample accession ERS1036029 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTCGTGTAGA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#382.cram cram 1003104.0 7776.0 SC RUN 18668 1#382 0:54 1:75 A:275526;C:213901;G:190809;T:322868;N:0 54 75     275526 213901 190809 322868 0 ERX1445984 ERS1036029 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.17365 0.18304 0.17364 0.18074 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21550 21550 ERR1374857 ERX1445983 ERS1036028 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281337 SAMEA3728879 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728879|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63d8ce90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTATTAGACG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63d8ce90 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#381 15545070 Illumina sequencing of library 15545070 constructed from sample accession ERS1036028 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTATTAGACG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#381.cram cram 553023.0 4287.0 SC RUN 18668 1#381 0:54 1:75 A:147453;C:125606;G:113473;T:166491;N:0 54 75     147453 125606 113473 166491 0 ERX1445983 ERS1036028 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.07054 0.14591 0.07053 0.1459 1.0 1.0     54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21551 21551 ERR1374856 ERX1445982 ERS1036027 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281336 SAMEA3728878 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728878|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:27Z|INSDC status:public|Submitter Id:63cfa6d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTTAGCTCGGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63cfa6d0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#380 15545069 Illumina sequencing of library 15545069 constructed from sample accession ERS1036027 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTTAGCTCGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#380.cram cram 1052640.0 8160.0 SC RUN 18668 1#380 0:54 1:75 A:272334;C:229709;G:203715;T:346882;N:0 54 75     272334 229709 203715 346882 0 ERX1445982 ERS1036027 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.31077 0.37992 0.31076 0.37991 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21552 21552 ERR1374855 ERX1445981 ERS1036026 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281335 SAMEA3728877 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728877|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:26Z|INSDC status:public|Submitter Id:63c630f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGCGATGTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63c630f0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#379 15545068 Illumina sequencing of library 15545068 constructed from sample accession ERS1036026 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTGCGATGTCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#379.cram cram 1640622.0 12718.0 SC RUN 18668 1#379 0:54 1:75 A:431283;C:344682;G:321969;T:542688;N:0 54 75     431283 344682 321969 542688 0 ERX1445981 ERS1036026 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.29581 0.39023 0.2958 0.39022 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21553 21553 ERR1374854 ERX1445980 ERS1036025 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281334 SAMEA3728876 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728876|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:26Z|INSDC status:public|Submitter Id:63bd0930 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTGCACTTAAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63bd0930 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#378 15545067 Illumina sequencing of library 15545067 constructed from sample accession ERS1036025 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTGCACTTAAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#378.cram cram 906999.0 7031.0 SC RUN 18668 1#378 0:54 1:75 A:245673;C:184416;G:171222;T:305688;N:0 54 75     245673 184416 171222 305688 0 ERX1445980 ERS1036025 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24186 0.3482 0.24185 0.34819 1.0 1.0     54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21554 21554 ERR1374853 ERX1445979 ERS1036024 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281333 SAMEA3728875 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728875|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:25Z|INSDC status:public|Submitter Id:63b3ba60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCTGGGAGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63b3ba60 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#377 15545066 Illumina sequencing of library 15545066 constructed from sample accession ERS1036024 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCTGGGAGAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#377.cram cram 390612.0 3028.0 SC RUN 18668 1#377 0:54 1:75 A:98977;C:98046;G:87213;T:106376;N:0 54 75     98977 98046 87213 106376 0 ERX1445979 ERS1036024 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.00038 0.00048 0.00037 0.00047 1.0 1.0     54 75 T T mates < 9% mapping rate illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21555 21555 ERR1374852 ERX1445978 ERS1036023 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281332 SAMEA3728874 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728874|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:25Z|INSDC status:public|Submitter Id:63aa4480 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCTGATTTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63aa4480 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#376 15545065 Illumina sequencing of library 15545065 constructed from sample accession ERS1036023 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCTGATTTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#376.cram cram 1790907.0 13883.0 SC RUN 18668 1#376 0:54 1:75 A:508300;C:371765;G:340642;T:570200;N:0 54 75     508300 371765 340642 570200 0 ERX1445978 ERS1036023 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.22446 0.28647 0.22445 0.28626 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21556 21556 ERR1374851 ERX1445977 ERS1036022 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281331 SAMEA3728873 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728873|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:24Z|INSDC status:public|Submitter Id:63a11cc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCGTGCTTTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63a11cc0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#375 15545064 Illumina sequencing of library 15545064 constructed from sample accession ERS1036022 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCGTGCTTTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#375.cram cram 1313349.0 10181.0 SC RUN 18668 1#375 0:54 1:75 A:354351;C:262296;G:244012;T:452690;N:0 54 75     354351 262296 244012 452690 0 ERX1445977 ERS1036022 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.37529 0.46316 0.37528 0.45581 1.0 0.99993   0.01754 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21557 21557 ERR1374850 ERX1445976 ERS1036021 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281330 SAMEA3728872 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728872|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:24Z|INSDC status:public|Submitter Id:6397cdf0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCGGCCCAAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6397cdf0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#374 15545063 Illumina sequencing of library 15545063 constructed from sample accession ERS1036021 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCGGCCCAAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#374.cram cram 9495561.0 73609.0 SC RUN 18668 1#374 0:54 1:75 A:2538234;C:2126986;G:1889072;T:2941269;N:0 54 75     2538234 2126986 1889072 2941269 0 ERX1445976 ERS1036021 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.12462 0.15044 0.12459 0.15041 0.99997 0.99997 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21558 21558 ERR1374849 ERX1445975 ERS1036020 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281329 SAMEA3728871 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728871|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:23Z|INSDC status:public|Submitter Id:638e5810 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCCCGTTTAA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:638e5810 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#373 15545062 Illumina sequencing of library 15545062 constructed from sample accession ERS1036020 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCCCGTTTAA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#373.cram cram 1347663.0 10447.0 SC RUN 18668 1#373 0:54 1:75 A:364080;C:281280;G:262702;T:439601;N:0 54 75     364080 281280 262702 439601 0 ERX1445975 ERS1036020 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.29672 0.29248 0.2966 0.29223 0.99997 0.99997 0.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21559 21559 ERR1374848 ERX1445974 ERS1036019 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281328 SAMEA3728870 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728870|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:23Z|INSDC status:public|Submitter Id:63846d00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTCATCCAATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63846d00 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#372 15545061 Illumina sequencing of library 15545061 constructed from sample accession ERS1036019 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTCATCCAATA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#372.cram cram 1457442.0 11298.0 SC RUN 18668 1#372 0:54 1:75 A:392913;C:312562;G:282308;T:469659;N:0 54 75     392913 312562 282308 469659 0 ERX1445974 ERS1036019 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.16521 0.1733 0.1652 0.17329 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21560 21560 ERR1374847 ERX1445973 ERS1036018 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281327 SAMEA3728869 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728869|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:22Z|INSDC status:public|Submitter Id:6379e5b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTATCGTCAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6379e5b0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#371 15545060 Illumina sequencing of library 15545060 constructed from sample accession ERS1036018 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTATCGTCAAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#371.cram cram 528900.0 4100.0 SC RUN 18668 1#371 0:54 1:75 A:135092;C:121387;G:114485;T:157936;N:0 54 75     135092 121387 114485 157936 0 ERX1445973 ERS1036018 ERA610021 European Nucleotide Archive Wellcome Sanger Institute                       B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21561 21561 ERR1374846 ERX1445972 ERS1036017 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281326 SAMEA3728868 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728868|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:22Z|INSDC status:public|Submitter Id:63706fd0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTAAGGAAGTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63706fd0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#370 15545059 Illumina sequencing of library 15545059 constructed from sample accession ERS1036017 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTAAGGAAGTA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#370.cram cram 891648.0 6912.0 SC RUN 18668 1#370 0:54 1:75 A:224658;C:209577;G:190876;T:266537;N:0 54 75     224658 209577 190876 266537 0 ERX1445972 ERS1036017 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.06502 0.08158 0.06501 0.06692 1.0 0.99995   1.0 54 75 T T mates < 9% mapping rate illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21562 21562 ERR1374845 ERX1445971 ERS1036016 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281325 SAMEA3728867 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728867|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:21Z|INSDC status:public|Submitter Id:63672100 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TTAACAAGTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63672100 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#369 15545058 Illumina sequencing of library 15545058 constructed from sample accession ERS1036016 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TTAACAAGTAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#369.cram cram 1606695.0 12455.0 SC RUN 18668 1#369 0:54 1:75 A:422391;C:343604;G:312477;T:528223;N:0 54 75     422391 343604 312477 528223 0 ERX1445971 ERS1036016 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.16991 0.23867 0.1699 0.23866 1.0 1.0     54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21563 21563 ERR1374844 ERX1445970 ERS1036015 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281324 SAMEA3728866 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728866|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:21Z|INSDC status:public|Submitter Id:635dd230 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTTGAACTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:635dd230 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#368 15545057 Illumina sequencing of library 15545057 constructed from sample accession ERS1036015 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTTGAACTCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#368.cram cram 1928292.0 14948.0 SC RUN 18668 1#368 0:54 1:75 A:521180;C:393086;G:370859;T:643167;N:0 54 75     521180 393086 370859 643167 0 ERX1445970 ERS1036015 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.27112 0.35395 0.27111 0.35331 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21564 21564 ERR1374843 ERX1445969 ERS1036014 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281323 SAMEA3728865 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728865|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:20Z|INSDC status:public|Submitter Id:63548360 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTTACCCGTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63548360 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#367 15545056 Illumina sequencing of library 15545056 constructed from sample accession ERS1036014 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTTACCCGTA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#367.cram cram 1013940.0 7860.0 SC RUN 18668 1#367 0:54 1:75 A:271289;C:212352;G:203745;T:326554;N:0 54 75     271289 212352 203745 326554 0 ERX1445969 ERS1036014 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24792 0.25875 0.24791 0.25841 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21565 21565 ERR1374842 ERX1445968 ERS1036013 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281322 SAMEA3728864 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728864|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:20Z|INSDC status:public|Submitter Id:634b3490 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTGCATAGTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:634b3490 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#366 15545055 Illumina sequencing of library 15545055 constructed from sample accession ERS1036013 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTGCATAGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#366.cram cram 1844313.0 14297.0 SC RUN 18668 1#366 0:54 1:75 A:496299;C:374567;G:338084;T:635363;N:0 54 75     496299 374567 338084 635363 0 ERX1445968 ERS1036013 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.35247 0.39799 0.35246 0.39665 1.0 0.99993   0.06666 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21566 21566 ERR1374841 ERX1445967 ERS1036012 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281321 SAMEA3728863 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728863|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:6341e5c0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTCTATTCAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6341e5c0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#365 15545054 Illumina sequencing of library 15545054 constructed from sample accession ERS1036012 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTCTATTCAC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#365.cram cram 1835283.0 14227.0 SC RUN 18668 1#365 0:54 1:75 A:493273;C:380459;G:370077;T:591474;N:0 54 75     493273 380459 370077 591474 0 ERX1445967 ERS1036012 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.23628 0.28935 0.23627 0.27695 1.0 0.99995   0.93181 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21567 21567 ERR1374840 ERX1445966 ERS1036011 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281320 SAMEA3728862 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728862|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:633896f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTAGCTTACC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:633896f0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#364 15545053 Illumina sequencing of library 15545053 constructed from sample accession ERS1036011 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTAGCTTACC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#364.cram cram 1688223.0 13087.0 SC RUN 18668 1#364 0:54 1:75 A:450385;C:348993;G:330742;T:558103;N:0 54 75     450385 348993 330742 558103 0 ERX1445966 ERS1036011 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.28027 0.3579 0.28026 0.34887 1.0 0.99997   1.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21568 21568 ERR1374839 ERX1445965 ERS1036010 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281319 SAMEA3728861 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728861|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:19Z|INSDC status:public|Submitter Id:632f4820 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGTAAGAATCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:632f4820 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#363 15545052 Illumina sequencing of library 15545052 constructed from sample accession ERS1036010 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGTAAGAATCA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#363.cram cram 4013319.0 31111.0 SC RUN 18668 1#363 0:54 1:75 A:1047562;C:843784;G:749096;T:1372877;N:0 54 75     1047562 843784 749096 1372877 0 ERX1445965 ERS1036010 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.26474 0.30978 0.26473 0.30683 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21569 21569 ERR1374838 ERX1445964 ERS1036009 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281318 SAMEA3728860 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728860|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:18Z|INSDC status:public|Submitter Id:6325f950 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGTTGTGGCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6325f950 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#362 15545051 Illumina sequencing of library 15545051 constructed from sample accession ERS1036009 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGTTGTGGCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#362.cram cram 8268255.0 64095.0 SC RUN 18668 1#362 0:54 1:75 A:2174138;C:1756790;G:1553021;T:2784306;N:0 54 75     2174138 1756790 1553021 2784306 0 ERX1445964 ERS1036009 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.33246 0.46406 0.33243 0.46312 0.99997 0.99981 0.0 0.27906 54 75 T B mate1 technical by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21570 21570 ERR1374837 ERX1445963 ERS1036008 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281317 SAMEA3728859 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728859|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:18Z|INSDC status:public|Submitter Id:631caa80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGGTATCAGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:631caa80 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#361 15545050 Illumina sequencing of library 15545050 constructed from sample accession ERS1036008 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGGTATCAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#361.cram cram 1545807.0 11983.0 SC RUN 18668 1#361 0:54 1:75 A:388157;C:353499;G:299492;T:504659;N:0 54 75     388157 353499 299492 504659 0 ERX1445963 ERS1036008 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.32705 0.36263 0.32704 0.36251 1.0 0.99997   1.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21571 21571 ERR1374836 ERX1445962 ERS1036007 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281316 SAMEA3728858 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728858|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:17Z|INSDC status:public|Submitter Id:63122330 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGGCCTTTAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:63122330 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#360 15545049 Illumina sequencing of library 15545049 constructed from sample accession ERS1036007 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGGCCTTTAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#360.cram cram 796962.0 6178.0 SC RUN 18668 1#360 0:54 1:75 A:205421;C:183412;G:167684;T:240445;N:0 54 75     205421 183412 167684 240445 0 ERX1445962 ERS1036007 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.16008 0.21906 0.16007 0.21905 1.0 1.0     54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21572 21572 ERR1374835 ERX1445961 ERS1036006 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281315 SAMEA3728857 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728857|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:17Z|INSDC status:public|Submitter Id:6308d460 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGGCAAGTTCG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6308d460 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#359 15545048 Illumina sequencing of library 15545048 constructed from sample accession ERS1036006 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGGCAAGTTCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#359.cram cram 1457700.0 11300.0 SC RUN 18668 1#359 0:54 1:75 A:381691;C:306041;G:273166;T:496802;N:0 54 75     381691 306041 273166 496802 0 ERX1445961 ERS1036006 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.35568 0.40861 0.35567 0.40802 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21573 21573 ERR1374834 ERX1445960 ERS1036005 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281314 SAMEA3728856 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728856|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:16Z|INSDC status:public|Submitter Id:62ff8590 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCGCTCGGAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ff8590 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#358 15545047 Illumina sequencing of library 15545047 constructed from sample accession ERS1036005 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGCGCTCGGAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#358.cram cram 1580766.0 12254.0 SC RUN 18668 1#358 0:54 1:75 A:407154;C:319618;G:294050;T:559944;N:0 54 75     407154 319618 294050 559944 0 ERX1445960 ERS1036005 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.33503 0.48661 0.33502 0.48649 1.0 0.99997   0.0 54 75 T B mate1 technical by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21574 21574 ERR1374833 ERX1445959 ERS1036004 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281313 SAMEA3728855 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728855|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:15Z|INSDC status:public|Submitter Id:62f60fb0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGCCCAGCATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62f60fb0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#357 15545046 Illumina sequencing of library 15545046 constructed from sample accession ERS1036004 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGCCCAGCATA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#357.cram cram 1647717.0 12773.0 SC RUN 18668 1#357 0:54 1:75 A:421018;C:364506;G:348242;T:513951;N:0 54 75     421018 364506 348242 513951 0 ERX1445959 ERS1036004 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.18264 0.21622 0.18263 0.19406 1.0 0.99991   0.81603 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21575 21575 ERR1374832 ERX1445958 ERS1036003 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281312 SAMEA3728854 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728854|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:15Z|INSDC status:public|Submitter Id:62ecc0e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGATTGATGGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ecc0e0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#356 15545045 Illumina sequencing of library 15545045 constructed from sample accession ERS1036003 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGATTGATGGA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#356.cram cram 1476921.0 11449.0 SC RUN 18668 1#356 0:54 1:75 A:388623;C:329404;G:278185;T:480709;N:0 54 75     388623 329404 278185 480709 0 ERX1445958 ERS1036003 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.28736 0.29022 0.28735 0.28988 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21576 21576 ERR1374831 ERX1445957 ERS1036002 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281311 SAMEA3728853 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728853|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62e39920 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGAGGGCTCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62e39920 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#355 15545044 Illumina sequencing of library 15545044 constructed from sample accession ERS1036002 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGAGGGCTCGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#355.cram cram 1297869.0 10061.0 SC RUN 18668 1#355 0:54 1:75 A:321675;C:309187;G:286434;T:380573;N:0 54 75     321675 309187 286434 380573 0 ERX1445957 ERS1036002 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.17335 0.1815 0.17334 0.18018 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21577 21577 ERR1374830 ERX1445956 ERS1036001 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281310 SAMEA3728852 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728852|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62da4a50 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGACGCGATTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62da4a50 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#354 15545043 Illumina sequencing of library 15545043 constructed from sample accession ERS1036001 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGACGCGATTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#354.cram cram 2254404.0 17476.0 SC RUN 18668 1#354 0:54 1:75 A:593689;C:473532;G:416369;T:770814;N:0 54 75     593689 473532 416369 770814 0 ERX1445956 ERS1036001 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.44622 0.486 0.44621 0.48599 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21578 21578 ERR1374829 ERX1445955 ERS1036000 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281309 SAMEA3728851 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728851|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:14Z|INSDC status:public|Submitter Id:62d0d470 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TGACAACGCTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62d0d470 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#353 15545042 Illumina sequencing of library 15545042 constructed from sample accession ERS1036000 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TGACAACGCTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#353.cram cram 2040651.0 15819.0 SC RUN 18668 1#353 0:54 1:75 A:536652;C:412332;G:375717;T:715950;N:0 54 75     536652 412332 375717 715950 0 ERX1445955 ERS1036000 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.34926 0.44657 0.34904 0.42924 0.99997 0.99989 1.0 0.97448 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21579 21579 ERR1374828 ERX1445954 ERS1035999 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281308 SAMEA3728850 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728850|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:13Z|INSDC status:public|Submitter Id:62c75e90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTTAATTGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62c75e90 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#352 15545041 Illumina sequencing of library 15545041 constructed from sample accession ERS1035999 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTTAATTGAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#352.cram cram 2707452.0 20988.0 SC RUN 18668 1#352 0:54 1:75 A:718804;C:585757;G:511662;T:891229;N:0 54 75     718804 585757 511662 891229 0 ERX1445954 ERS1035999 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.26416 0.33244 0.26415 0.32476 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21580 21580 ERR1374827 ERX1445953 ERS1035998 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281307 SAMEA3728849 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728849|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:13Z|INSDC status:public|Submitter Id:62be0fc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTTAAAGATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62be0fc0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#351 15545040 Illumina sequencing of library 15545040 constructed from sample accession ERS1035998 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTTAAAGATT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#351.cram cram 3549951.0 27519.0 SC RUN 18668 1#351 0:54 1:75 A:969722;C:703575;G:618005;T:1258649;N:0 54 75     969722 703575 618005 1258649 0 ERX1445953 ERS1035998 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24619 0.3418 0.24606 0.34007 0.99993 0.99995 0.66666 0.0 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21581 21581 ERR1374826 ERX1445952 ERS1035997 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281306 SAMEA3728848 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728848|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:12Z|INSDC status:public|Submitter Id:62b4c0f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTGAGTGCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62b4c0f0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#350 15545039 Illumina sequencing of library 15545039 constructed from sample accession ERS1035997 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTGAGTGCCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#350.cram cram 3638445.0 28205.0 SC RUN 18668 1#350 0:54 1:75 A:941688;C:783894;G:796467;T:1116396;N:0 54 75     941688 783894 796467 1116396 0 ERX1445952 ERS1035997 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2456 0.29806 0.24559 0.29801 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21582 21582 ERR1374825 ERX1445951 ERS1035996 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281305 SAMEA3728847 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728847|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:12Z|INSDC status:public|Submitter Id:62ab4b10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCGTCATAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62ab4b10 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#349 15545038 Illumina sequencing of library 15545038 constructed from sample accession ERS1035996 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCGTCATAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#349.cram cram 2497182.0 19358.0 SC RUN 18668 1#349 0:54 1:75 A:674017;C:505786;G:488086;T:829293;N:0 54 75     674017 505786 488086 829293 0 ERX1445951 ERS1035996 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.28176 0.34387 0.28175 0.34273 1.0 0.99993   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21583 21583 ERR1374824 ERX1445950 ERS1035995 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281304 SAMEA3728846 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728846|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:11Z|INSDC status:public|Submitter Id:62a1fc40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCGGGTGAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62a1fc40 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#348 15545037 Illumina sequencing of library 15545037 constructed from sample accession ERS1035995 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCGGGTGAC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#348.cram cram 803928.0 6232.0 SC RUN 18668 1#348 0:54 1:75 A:202262;C:188022;G:170949;T:242695;N:0 54 75     202262 188022 170949 242695 0 ERX1445950 ERS1035995 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.20466 0.22909 0.20465 0.22908 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21584 21584 ERR1374823 ERX1445949 ERS1035994 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281303 SAMEA3728845 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728845|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:11Z|INSDC status:public|Submitter Id:62988660 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTCAGAACTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62988660 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#347 15545036 Illumina sequencing of library 15545036 constructed from sample accession ERS1035994 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTCAGAACTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#347.cram cram 827019.0 6411.0 SC RUN 18668 1#347 0:54 1:75 A:216088;C:173079;G:160104;T:277748;N:0 54 75     216088 173079 160104 277748 0 ERX1445949 ERS1035994 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.30412 0.30791 0.30411 0.30748 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21585 21585 ERR1374822 ERX1445948 ERS1035993 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281302 SAMEA3728844 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728844|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:10Z|INSDC status:public|Submitter Id:628d14b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCTATCCTCAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:628d14b0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#346 15545035 Illumina sequencing of library 15545035 constructed from sample accession ERS1035993 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCTATCCTCAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#346.cram cram 1070958.0 8302.0 SC RUN 18668 1#346 0:54 1:75 A:282497;C:218462;G:212616;T:357383;N:0 54 75     282497 218462 212616 357383 0 ERX1445948 ERS1035993 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.34006 0.38903 0.34005 0.38902 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21586 21586 ERR1374821 ERX1445947 ERS1035992 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281301 SAMEA3728843 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728843|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:10Z|INSDC status:public|Submitter Id:628154e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTGTGAATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:628154e0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#345 15545034 Illumina sequencing of library 15545034 constructed from sample accession ERS1035992 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTGTGAATT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#345.cram cram 1072377.0 8313.0 SC RUN 18668 1#345 0:54 1:75 A:285076;C:231408;G:204910;T:350983;N:0 54 75     285076 231408 204910 350983 0 ERX1445947 ERS1035992 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.18283 0.26294 0.18282 0.26293 1.0 1.0     54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21587 21587 ERR1374820 ERX1445946 ERS1035991 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281300 SAMEA3728842 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728842|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:62780610 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTGTCGGAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62780610 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#344 15545033 Illumina sequencing of library 15545033 constructed from sample accession ERS1035991 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTGTCGGAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#344.cram cram 1061799.0 8231.0 SC RUN 18668 1#344 0:54 1:75 A:267222;C:245833;G:218391;T:330353;N:0 54 75     267222 245833 218391 330353 0 ERX1445946 ERS1035991 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.1511 0.23435 0.15109 0.23363 1.0 0.99997   0.0 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21588 21588 ERR1374819 ERX1445945 ERS1035990 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281299 SAMEA3728841 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728841|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:626eb740 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGTCACTGGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:626eb740 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#343 15545032 Illumina sequencing of library 15545032 constructed from sample accession ERS1035990 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGTCACTGGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#343.cram cram 1646298.0 12762.0 SC RUN 18668 1#343 0:54 1:75 A:430350;C:332673;G:316895;T:566380;N:0 54 75     430350 332673 316895 566380 0 ERX1445945 ERS1035990 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.3725 0.47576 0.3724 0.47071 0.99997 0.99993 0.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21589 21589 ERR1374818 ERX1445944 ERS1035989 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281298 SAMEA3728840 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728840|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:09Z|INSDC status:public|Submitter Id:62656870 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGGCCGGTCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62656870 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#342 15545031 Illumina sequencing of library 15545031 constructed from sample accession ERS1035989 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGGCCGGTCA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#342.cram cram 1661004.0 12876.0 SC RUN 18668 1#342 0:54 1:75 A:428622;C:353724;G:324244;T:554414;N:0 54 75     428622 353724 324244 554414 0 ERX1445944 ERS1035989 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.36823 0.43249 0.36822 0.41731 1.0 0.99991   0.86 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21590 21590 ERR1374817 ERX1445943 ERS1035988 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281297 SAMEA3728839 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728839|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:08Z|INSDC status:public|Submitter Id:625c19a0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCGGCATGATC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:625c19a0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#341 15545030 Illumina sequencing of library 15545030 constructed from sample accession ERS1035988 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCGGCATGATC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#341.cram cram 1188090.0 9210.0 SC RUN 18668 1#341 0:54 1:75 A:307367;C:255866;G:246298;T:378559;N:0 54 75     307367 255866 246298 378559 0 ERX1445943 ERS1035988 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.19368 0.23944 0.19367 0.23914 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21591 21591 ERR1374816 ERX1445942 ERS1035987 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281296 SAMEA3728838 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728838|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:08Z|INSDC status:public|Submitter Id:6252cad0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCTCGGGGTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6252cad0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#340 15545029 Illumina sequencing of library 15545029 constructed from sample accession ERS1035987 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCCTCGGGGTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#340.cram cram 2499762.0 19378.0 SC RUN 18668 1#340 0:54 1:75 A:675873;C:500350;G:456606;T:866933;N:0 54 75     675873 500350 456606 866933 0 ERX1445942 ERS1035987 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.31456 0.4068 0.3142 0.39891 0.99993 0.99991 0.83333 0.75471 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21592 21592 ERR1374815 ERX1445941 ERS1035986 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281295 SAMEA3728837 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728837|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:07Z|INSDC status:public|Submitter Id:62497c00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCCATGTGTGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62497c00 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#339 15545028 Illumina sequencing of library 15545028 constructed from sample accession ERS1035986 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCCATGTGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#339.cram cram 2328192.0 18048.0 SC RUN 18668 1#339 0:54 1:75 A:615062;C:497318;G:456096;T:759716;N:0 54 75     615062 497318 456096 759716 0 ERX1445941 ERS1035986 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.34263 0.37639 0.34262 0.3756 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21593 21593 ERR1374814 ERX1445940 ERS1035985 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281294 SAMEA3728836 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728836|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:07Z|INSDC status:public|Submitter Id:623fb800 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCATTGACTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:623fb800 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#338 15545027 Illumina sequencing of library 15545027 constructed from sample accession ERS1035985 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCATTGACTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#338.cram cram 2188743.0 16967.0 SC RUN 18668 1#338 0:54 1:75 A:607933;C:410250;G:366012;T:804548;N:0 54 75     607933 410250 366012 804548 0 ERX1445940 ERS1035985 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.52744 0.54641 0.52743 0.54376 1.0 0.99991   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21594 21594 ERR1374813 ERX1445939 ERS1035984 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281293 SAMEA3728835 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728835|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:06Z|INSDC status:public|Submitter Id:62366930 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCATGCTCCAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:62366930 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#337 15545026 Illumina sequencing of library 15545026 constructed from sample accession ERS1035984 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCATGCTCCAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#337.cram cram 2284203.0 17707.0 SC RUN 18668 1#337 0:54 1:75 A:607410;C:461907;G:437333;T:777553;N:0 54 75     607410 461907 437333 777553 0 ERX1445939 ERS1035984 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.3818 0.42953 0.38179 0.41626 1.0 0.99993   0.97814 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21595 21595 ERR1374812 ERX1445938 ERS1035983 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281292 SAMEA3728834 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728834|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:06Z|INSDC status:public|Submitter Id:622d1a60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCAGTATTTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:622d1a60 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#336 15545025 Illumina sequencing of library 15545025 constructed from sample accession ERS1035983 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCAGTATTTAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#336.cram cram 480525.0 3725.0 SC RUN 18668 1#336 0:54 1:75 A:131041;C:100381;G:92592;T:156511;N:0 54 75     131041 100381 92592 156511 0 ERX1445938 ERS1035983 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2082 0.26632 0.20819 0.26631 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21596 21596 ERR1374811 ERX1445937 ERS1035982 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281291 SAMEA3728833 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728833|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:6223cb90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACTTCAAGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6223cb90 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#335 15545024 Illumina sequencing of library 15545024 constructed from sample accession ERS1035982 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACTTCAAGA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#335.cram cram 1010586.0 7834.0 SC RUN 18668 1#335 0:54 1:75 A:260059;C:214294;G:196843;T:339390;N:0 54 75     260059 214294 196843 339390 0 ERX1445937 ERS1035982 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.30599 0.31128 0.30598 0.31078 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21597 21597 ERR1374810 ERX1445936 ERS1035981 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281290 SAMEA3728832 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728832|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:621a7cc0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACCTGTCGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:621a7cc0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#334 15545023 Illumina sequencing of library 15545023 constructed from sample accession ERS1035981 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACCTGTCGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#334.cram cram 722013.0 5597.0 SC RUN 18668 1#334 0:54 1:75 A:192364;C:154253;G:148364;T:227032;N:0 54 75     192364 154253 148364 227032 0 ERX1445936 ERS1035981 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.20643 0.24202 0.20622 0.24008 0.99997 0.99995 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21598 21598 ERR1374809 ERX1445935 ERS1035980 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281289 SAMEA3728831 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728831|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:05Z|INSDC status:public|Submitter Id:621106e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACCGGCTAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:621106e0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#333 15545022 Illumina sequencing of library 15545022 constructed from sample accession ERS1035980 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACCGGCTAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#333.cram cram 1964154.0 15226.0 SC RUN 18668 1#333 0:54 1:75 A:516192;C:401282;G:377422;T:669258;N:0 54 75     516192 401282 377422 669258 0 ERX1445935 ERS1035980 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2841 0.38168 0.28386 0.38084 0.99997 0.99997 0.0 0.0 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21599 21599 ERR1374808 ERX1445934 ERS1035979 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281288 SAMEA3728830 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728830|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:04Z|INSDC status:public|Submitter Id:6204f8f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCACATCTTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6204f8f0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#332 15545021 Illumina sequencing of library 15545021 constructed from sample accession ERS1035979 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCACATCTTCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#332.cram cram 3375156.0 26164.0 SC RUN 18668 1#332 0:54 1:75 A:921248;C:670747;G:688142;T:1095019;N:0 54 75     921248 670747 688142 1095019 0 ERX1445934 ERS1035979 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.21397 0.27154 0.21396 0.27109 1.0 0.99993   0.125 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21600 21600 ERR1374807 ERX1445933 ERS1035978 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281287 SAMEA3728829 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728829|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:04Z|INSDC status:public|Submitter Id:61fbaa20 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TCAATTGTGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61fbaa20 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#331 15545020 Illumina sequencing of library 15545020 constructed from sample accession ERS1035978 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TCAATTGTGCA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#331.cram cram 2819166.0 21854.0 SC RUN 18668 1#331 0:54 1:75 A:755540;C:568711;G:518826;T:976089;N:0 54 75     755540 568711 518826 976089 0 ERX1445933 ERS1035978 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.38278 0.42597 0.379 0.414 0.99991 0.99981 0.01315 0.5 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21601 21601 ERR1374806 ERX1445932 ERS1035977 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281286 SAMEA3728828 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728828|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61f23440 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATTGGCACTT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61f23440 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#330 15545019 Illumina sequencing of library 15545019 constructed from sample accession ERS1035977 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATTGGCACTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#330.cram cram 2357862.0 18278.0 SC RUN 18668 1#330 0:54 1:75 A:640714;C:464081;G:430399;T:822668;N:0 54 75     640714 464081 430399 822668 0 ERX1445932 ERS1035977 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.3993 0.46728 0.39923 0.46647 0.99997 0.99995 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21602 21602 ERR1374805 ERX1445931 ERS1035976 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281285 SAMEA3728827 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728827|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61e8be60 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATTATGCTTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61e8be60 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#329 15545018 Illumina sequencing of library 15545018 constructed from sample accession ERS1035976 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATTATGCTTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#329.cram cram 1651587.0 12803.0 SC RUN 18668 1#329 0:54 1:75 A:451712;C:326458;G:303137;T:570280;N:0 54 75     451712 326458 303137 570280 0 ERX1445931 ERS1035976 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.25978 0.36822 0.25968 0.36757 0.99997 0.99997 1.0 0.0 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21603 21603 ERR1374804 ERX1445930 ERS1035975 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281284 SAMEA3728826 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728826|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:03Z|INSDC status:public|Submitter Id:61df6f90 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATGAACAACT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61df6f90 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#328 15545017 Illumina sequencing of library 15545017 constructed from sample accession ERS1035975 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATGAACAACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#328.cram cram 1860696.0 14424.0 SC RUN 18668 1#328 0:54 1:75 A:478959;C:390421;G:353241;T:638075;N:0 54 75     478959 390421 353241 638075 0 ERX1445930 ERS1035975 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.22364 0.29493 0.22363 0.29419 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21604 21604 ERR1374803 ERX1445929 ERS1035974 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281283 SAMEA3728825 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728825|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:49:02Z|INSDC status:public|Submitter Id:61d620c0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TATAGATACGG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61d620c0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#327 15545016 Illumina sequencing of library 15545016 constructed from sample accession ERS1035974 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TATAGATACGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#327.cram cram 2557425.0 19825.0 SC RUN 18668 1#327 0:54 1:75 A:652419;C:549992;G:476513;T:878501;N:0 54 75     652419 549992 476513 878501 0 ERX1445929 ERS1035974 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.32414 0.35749 0.32413 0.35741 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21605 21605 ERR1374802 ERX1445928 ERS1035973 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281282 SAMEA3728824 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728824|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:02Z|INSDC status:public|Submitter Id:61ccd1f0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGTTCCTATT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61ccd1f0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#326 15545015 Illumina sequencing of library 15545015 constructed from sample accession ERS1035973 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGTTCCTATT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#326.cram cram 5223339.0 40491.0 SC RUN 18668 1#326 0:54 1:75 A:1438700;C:1030088;G:928639;T:1825912;N:0 54 75     1438700 1030088 928639 1825912 0 ERX1445928 ERS1035973 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.40078 0.45793 0.40053 0.45441 0.99995 0.99989 0.0 0.90265 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21606 21606 ERR1374801 ERX1445927 ERS1035972 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281281 SAMEA3728823 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728823|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:01Z|INSDC status:public|Submitter Id:61c35c10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGCCTTCTGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61c35c10 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#325 15545014 Illumina sequencing of library 15545014 constructed from sample accession ERS1035972 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGCCTTCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#325.cram cram 2968548.0 23012.0 SC RUN 18668 1#325 0:54 1:75 A:786528;C:620592;G:583862;T:977566;N:0 54 75     786528 620592 583862 977566 0 ERX1445927 ERS1035972 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.30578 0.36776 0.30562 0.3673 0.99995 0.99997 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21607 21607 ERR1374800 ERX1445926 ERS1035971 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281280 SAMEA3728822 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728822|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:01Z|INSDC status:public|Submitter Id:61ba0d40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGCCGCTTTG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61ba0d40 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#324 15545013 Illumina sequencing of library 15545013 constructed from sample accession ERS1035971 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGCCGCTTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#324.cram cram 562956.0 4364.0 SC RUN 18668 1#324 0:54 1:75 A:150387;C:118286;G:109669;T:184614;N:0 54 75     150387 118286 109669 184614 0 ERX1445926 ERS1035971 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.33909 0.28899 0.33908 0.28636 1.0 0.99995   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21608 21608 ERR1374799 ERX1445925 ERS1035970 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281279 SAMEA3728821 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728821|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:00Z|INSDC status:public|Submitter Id:61b0be70 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAGATTTAACT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61b0be70 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#323 15545012 Illumina sequencing of library 15545012 constructed from sample accession ERS1035970 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAGATTTAACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#323.cram cram 1402359.0 10871.0 SC RUN 18668 1#323 0:54 1:75 A:379901;C:288769;G:264894;T:468795;N:0 54 75     379901 288769 264894 468795 0 ERX1445925 ERS1035970 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.20511 0.2728 0.205 0.27243 0.99997 0.99997 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21609 21609 ERR1374798 ERX1445924 ERS1035969 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281278 SAMEA3728820 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728820|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:49:00Z|INSDC status:public|Submitter Id:61a74890 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACTACCAGGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61a74890 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#322 15545011 Illumina sequencing of library 15545011 constructed from sample accession ERS1035969 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACTACCAGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#322.cram cram 1333731.0 10339.0 SC RUN 18668 1#322 0:54 1:75 A:337092;C:284245;G:275518;T:436876;N:0 54 75     337092 284245 275518 436876 0 ERX1445924 ERS1035969 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24116 0.3051 0.24115 0.30497 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21610 21610 ERR1374797 ERX1445923 ERS1035968 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281277 SAMEA3728819 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728819|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:59Z|INSDC status:public|Submitter Id:619dd2b0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACGTTGCCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:619dd2b0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#321 15545010 Illumina sequencing of library 15545010 constructed from sample accession ERS1035968 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACGTTGCCAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#321.cram cram 1445445.0 11205.0 SC RUN 18668 1#321 0:54 1:75 A:374269;C:298459;G:274437;T:498280;N:0 54 75     374269 298459 274437 498280 0 ERX1445923 ERS1035968 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.38436 0.4496 0.38435 0.44755 1.0 0.99993   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21611 21611 ERR1374796 ERX1445922 ERS1035967 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281276 SAMEA3728818 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728818|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:59Z|INSDC status:public|Submitter Id:619483e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TACCGAGTCTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:619483e0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#320 15545009 Illumina sequencing of library 15545009 constructed from sample accession ERS1035967 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TACCGAGTCTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#320.cram cram 1888431.0 14639.0 SC RUN 18668 1#320 0:54 1:75 A:490856;C:386609;G:362675;T:648291;N:0 54 75     490856 386609 362675 648291 0 ERX1445922 ERS1035967 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.36908 0.45207 0.36907 0.45062 1.0 0.99995   0.375 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21612 21612 ERR1374795 ERX1445921 ERS1035966 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281275 SAMEA3728817 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728817|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:618b0e00 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATTTTCCCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:618b0e00 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#319 15545008 Illumina sequencing of library 15545008 constructed from sample accession ERS1035966 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATTTTCCCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#319.cram cram 2233248.0 17312.0 SC RUN 18668 1#319 0:54 1:75 A:629373;C:434567;G:430085;T:739223;N:0 54 75     629373 434567 430085 739223 0 ERX1445921 ERS1035966 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.26765 0.30998 0.26757 0.30966 0.99997 0.99995 0.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21613 21613 ERR1374794 ERX1445920 ERS1035965 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281274 SAMEA3728816 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728816|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:6181bf30 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATGTGGTCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6181bf30 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#318 15545007 Illumina sequencing of library 15545007 constructed from sample accession ERS1035965 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATGTGGTCA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#318.cram cram 2472801.0 19169.0 SC RUN 18668 1#318 0:54 1:75 A:641073;C:541906;G:463396;T:826426;N:0 54 75     641073 541906 463396 826426 0 ERX1445920 ERS1035965 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.34172 0.35186 0.34171 0.35139 1.0 0.99997   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21614 21614 ERR1374793 ERX1445919 ERS1035964 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281273 SAMEA3728815 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728815|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:58Z|INSDC status:public|Submitter Id:61784950 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAATAATTACA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61784950 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#317 15545006 Illumina sequencing of library 15545006 constructed from sample accession ERS1035964 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAATAATTACA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#317.cram cram 5019390.0 38910.0 SC RUN 18668 1#317 0:54 1:75 A:1356210;C:1017960;G:900281;T:1744939;N:0 54 75     1356210 1017960 900281 1744939 0 ERX1445919 ERS1035964 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.28383 0.31352 0.28382 0.31021 1.0 0.99997   1.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21615 21615 ERR1374792 ERX1445918 ERS1035963 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281272 SAMEA3728814 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728814|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:57Z|INSDC status:public|Submitter Id:616efa80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAGGTTAGAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:616efa80 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#316 15545005 Illumina sequencing of library 15545005 constructed from sample accession ERS1035963 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAGGTTAGAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#316.cram cram 3935403.0 30507.0 SC RUN 18668 1#316 0:54 1:75 A:1036371;C:840041;G:768728;T:1290263;N:0 54 75     1036371 840041 768728 1290263 0 ERX1445918 ERS1035963 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.18228 0.24261 0.18224 0.24165 0.99997 0.99991 1.0 0.13043 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21616 21616 ERR1374791 ERX1445917 ERS1035962 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281271 SAMEA3728813 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728813|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:57Z|INSDC status:public|Submitter Id:616584a0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAATACCATC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:616584a0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#315 15545004 Illumina sequencing of library 15545004 constructed from sample accession ERS1035962 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAATACCATC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#315.cram cram 3980037.0 30853.0 SC RUN 18668 1#315 0:54 1:75 A:1072227;C:761798;G:740223;T:1405789;N:0 54 75     1072227 761798 740223 1405789 0 ERX1445917 ERS1035962 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.19278 0.3107 0.19269 0.30832 0.99995 0.99995 1.0 0.85185 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21617 21617 ERR1374790 ERX1445916 ERS1035961 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281270 SAMEA3728812 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728812|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:56Z|INSDC status:public|Submitter Id:615c35d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence TAAAGTCATGC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:615c35d0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#314 15545003 Illumina sequencing of library 15545003 constructed from sample accession ERS1035961 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence TAAAGTCATGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#314.cram cram 4752489.0 36841.0 SC RUN 18668 1#314 0:54 1:75 A:1274157;C:961464;G:890805;T:1626063;N:0 54 75     1274157 961464 890805 1626063 0 ERX1445916 ERS1035961 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2673 0.34758 0.26729 0.32733 1.0 0.99983   0.46739 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21618 21618 ERR1374789 ERX1445915 ERS1035960 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281269 SAMEA3728811 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728811|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:56Z|INSDC status:public|Submitter Id:6152bff0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTTTCATAAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6152bff0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#313 15545002 Illumina sequencing of library 15545002 constructed from sample accession ERS1035960 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTTTCATAAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#313.cram cram 2999250.0 23250.0 SC RUN 18668 1#313 0:54 1:75 A:788141;C:633372;G:552719;T:1025018;N:0 54 75     788141 633372 552719 1025018 0 ERX1445915 ERS1035960 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.38742 0.42111 0.38741 0.4211 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21619 21619 ERR1374788 ERX1445914 ERS1035959 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281268 SAMEA3728810 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728810|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:55Z|INSDC status:public|Submitter Id:61497120 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTTGTATGTC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61497120 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#312 15545001 Illumina sequencing of library 15545001 constructed from sample accession ERS1035959 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTTGTATGTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#312.cram cram 1283421.0 9949.0 SC RUN 18668 1#312 0:54 1:75 A:349855;C:274932;G:249255;T:409379;N:0 54 75     349855 274932 249255 409379 0 ERX1445914 ERS1035959 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2614 0.33378 0.26094 0.32532 0.99997 0.99993 0.0 0.76271 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21620 21620 ERR1374787 ERX1445913 ERS1035958 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281267 SAMEA3728809 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728809|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:55Z|INSDC status:public|Submitter Id:613ffb40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTGTGTAGCT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:613ffb40 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#311 15545000 Illumina sequencing of library 15545000 constructed from sample accession ERS1035958 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTGTGTAGCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#311.cram cram 648612.0 5028.0 SC RUN 18668 1#311 0:54 1:75 A:162874;C:158142;G:139300;T:188296;N:0 54 75     162874 158142 139300 188296 0 ERX1445913 ERS1035958 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.11688 0.12832 0.11687 0.12831 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21621 21621 ERR1374786 ERX1445912 ERS1035957 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281266 SAMEA3728808 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728808|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:06Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:61368560 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTGACGAATA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61368560 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#310 15544999 Illumina sequencing of library 15544999 constructed from sample accession ERS1035957 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTGACGAATA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#310.cram cram 2499633.0 19377.0 SC RUN 18668 1#310 0:54 1:75 A:643386;C:547055;G:481118;T:828074;N:0 54 75     643386 547055 481118 828074 0 ERX1445912 ERS1035957 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.23451 0.24928 0.23439 0.24765 0.99995 0.99993 0.5 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21622 21622 ERR1374785 ERX1445911 ERS1035956 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281265 SAMEA3728807 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728807|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:612d3690 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTTAGATTGCA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:612d3690 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#309 15544998 Illumina sequencing of library 15544998 constructed from sample accession ERS1035956 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTTAGATTGCA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#309.cram cram 1439124.0 11156.0 SC RUN 18668 1#309 0:54 1:75 A:374367;C:312581;G:280472;T:471704;N:0 54 75     374367 312581 280472 471704 0 ERX1445911 ERS1035956 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24464 0.2853 0.24453 0.28407 0.99997 0.99997 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21623 21623 ERR1374784 ERX1445910 ERS1035955 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281264 SAMEA3728806 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728806|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:54Z|INSDC status:public|Submitter Id:61234b80 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGTTACTTCC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:61234b80 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#308 15544997 Illumina sequencing of library 15544997 constructed from sample accession ERS1035955 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGTTACTTCC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#308.cram cram 2583354.0 20026.0 SC RUN 18668 1#308 0:54 1:75 A:707979;C:517605;G:485253;T:872517;N:0 54 75     707979 517605 485253 872517 0 ERX1445910 ERS1035955 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.33131 0.40173 0.3313 0.38929 1.0 0.99993   0.89784 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21624 21624 ERR1374783 ERX1445909 ERS1035954 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281263 SAMEA3728805 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728805|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:53Z|INSDC status:public|Submitter Id:6119fcb0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGAGGTATGT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6119fcb0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#307 15544996 Illumina sequencing of library 15544996 constructed from sample accession ERS1035954 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGAGGTATGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#307.cram cram 2186163.0 16947.0 SC RUN 18668 1#307 0:54 1:75 A:542435;C:523253;G:473929;T:646546;N:0 54 75     542435 523253 473929 646546 0 ERX1445909 ERS1035954 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.1948 0.20473 0.19451 0.20465 0.99993 0.99997 0.5 1.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21625 21625 ERR1374782 ERX1445908 ERS1035953 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281262 SAMEA3728804 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728804|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:53Z|INSDC status:public|Submitter Id:611086d0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTGACAGCTAC is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:611086d0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#306 15544995 Illumina sequencing of library 15544995 constructed from sample accession ERS1035953 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTGACAGCTAC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#306.cram cram 2326773.0 18037.0 SC RUN 18668 1#306 0:54 1:75 A:599863;C:495277;G:479237;T:752396;N:0 54 75     599863 495277 479237 752396 0 ERX1445908 ERS1035953 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.24014 0.25494 0.24013 0.24335 1.0 0.99993   0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21626 21626 ERR1374781 ERX1445907 ERS1035952 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281261 SAMEA3728803 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728803|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:6106e9e0 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCTTTGATTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:6106e9e0 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#305 15544994 Illumina sequencing of library 15544994 constructed from sample accession ERS1035952 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCTTTGATTA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#305.cram cram 4793769.0 37161.0 SC RUN 18668 1#305 0:54 1:75 A:1318173;C:970407;G:861687;T:1643502;N:0 54 75     1318173 970407 861687 1643502 0 ERX1445907 ERS1035952 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.27744 0.38766 0.2774 0.38235 0.99997 0.99979 1.0 0.01324 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21627 21627 ERR1374780 ERX1445906 ERS1035951 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281260 SAMEA3728802 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728802|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:60fd9b10 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCAGGTTCAG is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60fd9b10 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#304 15544993 Illumina sequencing of library 15544993 constructed from sample accession ERS1035951 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCAGGTTCAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#304.cram cram 2696358.0 20902.0 SC RUN 18668 1#304 0:54 1:75 A:702537;C:601477;G:538319;T:854025;N:0 54 75     702537 601477 538319 854025 0 ERX1445906 ERS1035951 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.2466 0.30901 0.24653 0.30866 0.99997 0.99995 1.0 0.0 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21628 21628 ERR1374779 ERX1445905 ERS1035950 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281259 SAMEA3728801 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728801|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:05Z|INSDC last update:2016 01 19T16:48:52Z|INSDC status:public|Submitter Id:60f44c40 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTCACCATGGA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60f44c40 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#303 15544992 Illumina sequencing of library 15544992 constructed from sample accession ERS1035950 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTCACCATGGA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#303.cram cram 1360047.0 10543.0 SC RUN 18668 1#303 0:54 1:75 A:344956;C:299761;G:277607;T:437723;N:0 54 75     344956 299761 277607 437723 0 ERX1445905 ERS1035950 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.19903 0.2592 0.19902 0.25919 1.0 1.0     54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21629 21629 ERR1374778 ERX1445904 ERS1035949 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281258 SAMEA3728800 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728800|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:51Z|INSDC status:public|Submitter Id:60eafd70 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAGTCGATAT is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60eafd70 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#302 15544991 Illumina sequencing of library 15544991 constructed from sample accession ERS1035949 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAGTCGATAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#302.cram cram 3251445.0 25205.0 SC RUN 18668 1#302 0:54 1:75 A:845741;C:700258;G:637199;T:1068247;N:0 54 75     845741 700258 637199 1068247 0 ERX1445904 ERS1035949 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.26977 0.31719 0.26972 0.31333 0.99997 0.99995 1.0 0.98717 54 75 B B biological fallback assumption illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined
21630 21630 ERR1374777 ERX1445903 ERS1035948 ERP011007 PRJEB9859 Transcriptome profiling of single zebrafish cells Transcriptome_profiling_of_single_zebrafish_cells-sc-2991 Transcriptome Analysis Paired end sequence data from the Illumina HiSeq was prepared from individual wild type zebrafish cells. Generated to study the transcriptome of single cells.       Single cell TC6281257 SAMEA3728799 Wellcome Sanger Institute ArrayExpress Species:Danio rerio|ENA first public:2016 04 26|ENA last update:2016 01 19|External Id:SAMEA3728799|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 04 26T14:06:04Z|INSDC last update:2016 01 19T16:48:51Z|INSDC status:public|Submitter Id:60e18790 a4bf 11e5 bdd9 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from single cells. An 11 base indexing sequence GTAGATCGCTA is bases 11 to 21 of read 1 followed by CG and polyT.|sample name:60e18790 a4bf 11e5 bdd9 68b59976a382                 Illumina MiSeq paired end sequencing SC EXP 18668 1#301 15544990 Illumina sequencing of library 15544990 constructed from sample accession ERS1035948 for study accession ERP011007. This is part of an Illumina multiplexed sequencing run 18668 1. This submission includes reads tagged with the sequence GTAGATCGCTA. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina MiSeq   ERP011007 Illumina MiSeq paired end sequencing ENA FIRST PUBLIC:2016 04 26|ENA LAST UPDATE:2018 11 16 18668_1#301.cram cram 2827293.0 21917.0 SC RUN 18668 1#301 0:54 1:75 A:727124;C:621741;G:571198;T:907230;N:0 54 75     727124 621741 571198 907230 0 ERX1445903 ERS1035948 ERA610021 European Nucleotide Archive Wellcome Sanger Institute 2 0.17368 0.23345 0.17367 0.22822 1.0 0.99993   0.9759 54 75 B B mate1-mate2 similar by mapping diff illumina miseq 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-01-19 Undetermined Undetermined Undetermined Undetermined

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;