metadata: run_metadata: 32 rows where devstage_curation_coarse = "Undetermined" and experiment.library

32 rows where devstage_curation_coarse = "Undetermined" and experiment.library_selection = "RANDOM"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
10391	10391	ERR8516975	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X4_190227_A00421_38_AH7523DRXX_S56_R1_001.fastq.gz 15812X4_190227_A00421_38_AH7523DRXX_S56_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X4 190227 A00421 38 AH7523DRXX S56 R	0:51 1:51	A:1077092958;C:949537387;G:955020348;T:1099432979;N:20556852	51	51	1077092958	949537387	955020348	1099432979	20556852	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.9053	0.9259	0.21658	0.22155	0.69369	0.69179	0.50726	0.50871	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10392	10392	ERR8516976	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X5_190227_A00421_38_AH7523DRXX_S55_R1_001.fastq.gz 15812X5_190227_A00421_38_AH7523DRXX_S55_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X5 190227 A00421 38 AH7523DRXX S55 R	0:51 1:51	A:972081222;C:890179393;G:888655698;T:998443264;N:18934747	51	51	972081222	890179393	888655698	998443264	18934747	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.86107	0.87807	0.22063	0.23029	0.70859	0.70561	0.51656	0.51946	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10393	10393	ERR8516977	ERX8083451	ERS10521298	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling neurite	SAMEA12922152	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922152\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Sibling neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling neurite p	Sibling neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X6_190227_A00421_38_AH7523DRXX_S54_R1_001.fastq.gz 15812X6_190227_A00421_38_AH7523DRXX_S54_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X6 190227 A00421 38 AH7523DRXX S54 R	0:51 1:51	A:728798881;C:962223604;G:958876331;T:735449513;N:17094231	51	51	728798881	962223604	958876331	735449513	17094231	ERX8083451	ERS10521298	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.54616	0.55881	0.13313	0.14036	0.84295	0.84185	0.64193	0.59762	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10394	10394	ERR8516972	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X1_190227_A00421_38_AH7523DRXX_S59_R1_001.fastq.gz 15812X1_190227_A00421_38_AH7523DRXX_S59_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X1 190227 A00421 38 AH7523DRXX S59 R	0:51 1:51	A:837274632;C:1062368015;G:1049892288;T:853310517;N:19213786	51	51	837274632	1062368015	1049892288	853310517	19213786	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.5726	0.57788	0.13781	0.14082	0.80616	0.80452	0.61581	0.60389	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10395	10395	ERR8516973	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X2_190227_A00421_38_AH7523DRXX_S58_R1_001.fastq.gz 15812X2_190227_A00421_38_AH7523DRXX_S58_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X2 190227 A00421 38 AH7523DRXX S58 R	0:51 1:51	A:897813231;C:796012893;G:794839496;T:923696030;N:17221274	51	51	897813231	796012893	794839496	923696030	17221274	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.92095	0.94156	0.18892	0.20024	0.6901	0.68905	0.49377	0.50086	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10396	10396	ERR8516974	ERX8083450	ERS10521297	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Sibling cellular	SAMEA12922151	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922151\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Sibling cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq sibling +/+ and +/ \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Sibling cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Sibling cellular p	Sibling cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq sibling +/+ and +/ \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X3_190227_A00421_38_AH7523DRXX_S57_R1_001.fastq.gz 15812X3_190227_A00421_38_AH7523DRXX_S57_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X3 190227 A00421 38 AH7523DRXX S57 R	0:51 1:51	A:951912827;C:1107150666;G:1086060798;T:973791571;N:20785248	51	51	951912827	1107150666	1086060798	973791571	20785248	ERX8083450	ERS10521297	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.63792	0.62667	0.18547	0.18671	0.78756	0.78549	0.59274	0.55478	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10397	10397	ERR8516969	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X10_190227_A00421_38_AH7523DRXX_S48_R1_001.fastq.gz 15812X10_190227_A00421_38_AH7523DRXX_S48_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X10 190227 A00421 38 AH7523DRXX S48 R	0:51 1:51	A:925784769;C:934445856;G:959155668;T:924080408;N:18878983	51	51	925784769	934445856	959155668	924080408	18878983	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.59503	0.61112	0.1947	0.20225	0.76512	0.76337	0.54584	0.54345	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10398	10398	ERR8516970	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X11_190227_A00421_38_AH7523DRXX_S52_R1_001.fastq.gz 15812X11_190227_A00421_38_AH7523DRXX_S52_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X11 190227 A00421 38 AH7523DRXX S52 R	0:51 1:51	A:991755033;C:864808531;G:892202564;T:992188806;N:18881958	51	51	991755033	864808531	892202564	992188806	18881958	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.86612	0.88689	0.26181	0.2728	0.7094	0.7091	0.53639	0.53906	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10399	10399	ERR8516971	ERX8083449	ERS10521296	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null neurite	SAMEA12922150	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922150\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null neurite\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neurite\|sample name:E MTAB 11431:Null neurite	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null neurite p	Null neurite p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neurite	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X12_190227_A00421_38_AH7523DRXX_S50_R1_001.fastq.gz 15812X12_190227_A00421_38_AH7523DRXX_S50_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X12 190227 A00421 38 AH7523DRXX S50 R	0:51 1:51	A:766707527;C:798667604;G:818782599;T:773280942;N:15938306	51	51	766707527	798667604	818782599	773280942	15938306	ERX8083449	ERS10521296	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.88811	0.92834	0.21869	0.22669	0.72878	0.72604	0.55598	0.57831	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10400	10400	ERR8516966	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X7_190227_A00421_38_AH7523DRXX_S53_R1_001.fastq.gz 15812X7_190227_A00421_38_AH7523DRXX_S53_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X7 190227 A00421 38 AH7523DRXX S53 R	0:51 1:51	A:774360373;C:720215184;G:719479745;T:796239200;N:15182374	51	51	774360373	720215184	719479745	796239200	15182374	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.79643	0.81194	0.25554	0.2603	0.72236	0.72021	0.51775	0.51678	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10401	10401	ERR8516967	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X8_190227_A00421_38_AH7523DRXX_S51_R1_001.fastq.gz 15812X8_190227_A00421_38_AH7523DRXX_S51_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X8 190227 A00421 38 AH7523DRXX S51 R	0:51 1:51	A:739921027;C:667375549;G:663864111;T:764302396;N:14288091	51	51	739921027	667375549	663864111	764302396	14288091	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.90817	0.92909	0.23387	0.24814	0.70088	0.69842	0.51238	0.51267	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
10402	10402	ERR8516968	ERX8083448	ERS10521295	ERP135383	PRJEB50776	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E-MTAB-11431	Other	Zebrafish primary neurons either sfpq sibling/control +/+ +/ or null / were cultured in transwell inserts. At DIV2 for each genotype cellular and neurite tissues were separately isolated RNA extracted and total RNAseq performed.	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19	Protocols: Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Null cellular	SAMEA12922149	Centre for Developmental Neurobiology, King's College London	ENA first public:2022 02 19\|ENA last update:2022 02 19\|External Id:SAMEA12922149\|INSDC center alias:Centre for Developmental Neurobiology King's College London\|INSDC center name:Centre for Developmental Neurobiology King's College London\|INSDC first public:2022 02 19T00:15:43Z\|INSDC last update:2022 02 19T00:15:43Z\|INSDC status:public\|Submitter Id:E MTAB 11431:Null cellular\|broker name:ArrayExpress\|common name:zebrafish\|genotype:sfpq null / \|growth condition:transwell culture\|organism part:neuron\|sample name:E MTAB 11431:Null cellular	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	E MTAB 11431:Null cellular p	Null cellular p	Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	Cellular and neurite tissues cultured in transwell inserts were collected separately. Cellular tissue by swabbing and neurite tissue using a cell scraper Qiagen RNeasy Micro Kit TruSeq Stranded Total RNA Library Prep Gold kit with Ribo Zero Gold depleteion	Experimental Factor: genotype:sfpq null / \|Experimental Factor: organism part:neuron	RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	ERP135383	Illumina NovaSeq 6000 paired end sequencing; Total RNAseq of sfpq sibling +/+ +/ and null / primary zebrafish neuron cellular and neurite tissue	ENA FIRST PUBLIC:2022 02 19\|ENA LAST UPDATE:2022 02 19\|loader:fastq load.py	15812X9_190227_A00421_38_AH7523DRXX_S49_R1_001.fastq.gz 15812X9_190227_A00421_38_AH7523DRXX_S49_R2_001.fastq.gz	fastq fastq			E MTAB 11431:15812X9 190227 A00421 38 AH7523DRXX S49 R	0:51 1:51	A:882831441;C:935213418;G:957033335;T:879085993;N:18444957	51	51	882831441	935213418	957033335	879085993	18444957	ERX8083448	ERS10521295	ERA8932807	Centre for Developmental Neurobiology, King	Centre for Developmental Neurobiology, King	2	0.76218	0.7682	0.18357	0.18521	0.74444	0.74272	0.46714	0.55518	51	51	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	ribozero	bulk	bulk	bulk	United Kingdom	2022-02-19	Undetermined	Undetermined	Brain	Nervous System
48909	48909	SRR7615221	SRX4479802	SRS3604791	SRP155604	PRJNA479418	Lariat intronic RNAs in the cytoplasm of vertebrate cells	PRJNA479418	Other	Introns are non coding DNA sequences interspersed among the coding sequences of genes. Shortly post transcription the intronic sequences are spliced out of the primary RNA transcript as lariat RNAs circular molecules with a short tail. Most of these lariats are destroyed within minutes in the cell nucleus. We report here that many such intronic RNAs are in fact exported to the cytoplasm where they remain as stable circular molecules. These cytoplasmic introns are derived from hundreds of different genes of widely different functions. We find them in cells of human mouse chicken frog and zebrafish. The widespread occurrence of so many stable lariat RNAs in the cytoplasm suggests that they play some as yet unexpected role in cell metabolism.				zebrafish eggs plusRNaseR		strain:AB strain\|dev stage:Germline\|sex:female\|tissue:Egg\|treatment:n1\|rna treatment:rRNA depletion and RNase R\|BioSampleModel:Model organism or animal	RNAseq of Zebrafish egg plus RNaseR	Zf pR	Zf pR	rRNA depletion ribozero fellowed by TruSeq Stranded Total RNA illumina			RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 2000	SRP155604			150112_Zebrafish_egg_plusRNaseR_50bp.fastq	fastq	1453087900.0	29061758.0	150112 Zebrafish egg plusRNaseR 50bp.fastq	0:50	A:316388483;C:426462939;G:363020331;T:347178488;N:37659	50		316388483	426462939	363020331	347178488	37659	SRX4479802	SRS3604791	SRA746415	Carnegie Institution for Science\|Department of Embryology	Carnegie Institution for Science	1	0.83263		0.31979		0.81592		0.51542		50		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	ribozero	bulk	unknown	unknown	United States	2018-07-28	Undetermined	Undetermined	Undetermined	Undetermined
48910	48910	SRR7615223	SRX4479800	SRS3604789	SRP155604	PRJNA479418	Lariat intronic RNAs in the cytoplasm of vertebrate cells	PRJNA479418	Other	Introns are non coding DNA sequences interspersed among the coding sequences of genes. Shortly post transcription the intronic sequences are spliced out of the primary RNA transcript as lariat RNAs circular molecules with a short tail. Most of these lariats are destroyed within minutes in the cell nucleus. We report here that many such intronic RNAs are in fact exported to the cytoplasm where they remain as stable circular molecules. These cytoplasmic introns are derived from hundreds of different genes of widely different functions. We find them in cells of human mouse chicken frog and zebrafish. The widespread occurrence of so many stable lariat RNAs in the cytoplasm suggests that they play some as yet unexpected role in cell metabolism.				zebrafish eggs minusRNaseR		strain:AB strain\|dev stage:Germline\|sex:female\|tissue:Egg\|treatment:n1\|rna treatment:rRNA depletion\|BioSampleModel:Model organism or animal	RNAseq of Zebrafish egg minus RNaseR	Zf mR	Zf mR	rRNA depletion ribozero fellowed by TruSeq Stranded Total RNA illumina			RNA-Seq	TRANSCRIPTOMIC	RANDOM	SINGLE	ILLUMINA	Illumina HiSeq 2000	SRP155604			150112_Zebrafish_egg_minusRNaseR_50bp.fastq	fastq	2440809700.0	48816194.0	150112 Zebrafish egg minusRNaseR 50bp.fastq	0:50	A:588729472;C:623954878;G:556893764;T:671166713;N:64873	50		588729472	623954878	556893764	671166713	64873	SRX4479800	SRS3604789	SRA746415	Carnegie Institution for Science\|Department of Embryology	Carnegie Institution for Science	1	0.92096		0.07705		0.72861		0.50081		50		B		usable mapping rate	illumina	hiseq_era	unknown	random_priming	ribozero	bulk	unknown	unknown	United States	2018-07-28	Undetermined	Undetermined	Undetermined	Undetermined
68109	68109	SRR17600926	SRX13769748	SRS11649751	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		WT+E.coli1	WT+E.coli1	GF WT E1		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:WT+E.coli1\|ID:10\|BioSampleModel:Model organism or animal	Danio rerio	GF WT E1	GF WT E1	WT+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_WT_E1_Clean_Data1.fq.gz GF_WT_E1_Clean_Data2.fq.gz	fastq fastq	5722208611.0	20607920.0	GF WT E1 Clean Data1.fq.gz	0:138.84 1:138.83	A:1540223471;C:1318102846;G:1330098519;T:1533783551;N:224	138	138	1540223471	1318102846	1330098519	1533783551	224	SRX13769748	SRS11649751	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94934	0.95004	0.10193	0.10143	0.67375	0.67298	0.47471	0.47424	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68110	68110	SRR17600927	SRX13769747	SRS11649750	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		luxS+E.coli3	luxS+E.coli3	GF KO E3		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:luxS+E.coli3\|ID:9\|BioSampleModel:Model organism or animal	Danio rerio	GF KO E3	GF KO E3	KO+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_KO_E3_Clean_Data1.fq.gz GF_KO_E3_Clean_Data2.fq.gz	fastq fastq	5889250016.0	21144775.0	GF KO E3 Clean Data1.fq.gz	0:139.26 1:139.26	A:1620329671;C:1324010520;G:1330595847;T:1614313735;N:243	139	139	1620329671	1324010520	1330595847	1614313735	243	SRX13769747	SRS11649750	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94698	0.94852	0.11876	0.11831	0.67495	0.67517	0.47639	0.48061	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68111	68111	SRR17600928	SRX13769746	SRS11649749	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		luxS+E.coli2	luxS+E.coli2	GF KO E2		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:luxS+E.coli2\|ID:8\|BioSampleModel:Model organism or animal	Danio rerio	GF KO E2	GF KO E2	KO+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_KO_E2_Clean_Data1.fq.gz GF_KO_E2_Clean_Data2.fq.gz	fastq fastq	6504274425.0	23249789.0	GF KO E2 Clean Data1.fq.gz	0:139.88 1:139.87	A:1766001900;C:1480404718;G:1494298349;T:1763569217;N:241	139	139	1766001900	1480404718	1494298349	1763569217	241	SRX13769746	SRS11649749	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94738	0.94849	0.10481	0.10434	0.67022	0.66918	0.46937	0.46181	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68112	68112	SRR17600929	SRX13769745	SRS11649748	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		luxS+E.coli1	luxS+E.coli1	GF KO E1		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:luxS+E.coli1\|ID:7\|BioSampleModel:Model organism or animal	Danio rerio	GF KO E1	GF KO E1	KO+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_KO_E1_Clean_Data1.fq.gz GF_KO_E1_Clean_Data2.fq.gz	fastq fastq	6723052797.0	24155410.0	GF KO E1 Clean Data1.fq.gz	0:139.16 1:139.16	A:1841129365;C:1517886618;G:1529873607;T:1834162936;N:271	139	139	1841129365	1517886618	1529873607	1834162936	271	SRX13769745	SRS11649748	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94667	0.94708	0.11716	0.11601	0.67521	0.67414	0.47792	0.47067	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68113	68113	SRR17600930	SRX13769744	SRS11649747	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		E.coli3	E.coli3	GF E3		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:E.coli3\|ID:6\|BioSampleModel:Model organism or animal	Danio rerio	GF E3	GF E3	E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_E3_Clean_Data1.fq.gz GF_E3_Clean_Data2.fq.gz	fastq fastq	4907699666.0	17532965.0	GF E3 Clean Data1.fq.gz	0:139.96 1:139.95	A:1313371994;C:1137331297;G:1142894993;T:1314101187;N:195	139	139	1313371994	1137331297	1142894993	1314101187	195	SRX13769744	SRS11649747	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.95257	0.95317	0.08924	0.08818	0.65906	0.65782	0.49004	0.49077	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68114	68114	SRR17600931	SRX13769743	SRS11649746	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		E.coli2	E.coli2	GF E2		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:E.coli2\|ID:5\|BioSampleModel:Model organism or animal	Danio rerio	GF E2	GF E2	E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_E2_Clean_Data1.fq.gz GF_E2_Clean_Data2.fq.gz	fastq fastq	5297962158.0	18917352.0	GF E2 Clean Data1.fq.gz	0:140.03 1:140.03	A:1418683575;C:1225022840;G:1234832199;T:1419423335;N:209	140	140	1418683575	1225022840	1234832199	1419423335	209	SRX13769743	SRS11649746	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.9504	0.95145	0.08893	0.08853	0.65884	0.65758	0.47798	0.48072	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68115	68115	SRR17600932	SRX13769742	SRS11649745	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		E.coli1	E.coli1	GF E1		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:E.coli1\|ID:4\|BioSampleModel:Model organism or animal	Danio rerio	GF E1	GF E1	E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_E1_Clean_Data1.fq.gz GF_E1_Clean_Data2.fq.gz	fastq fastq	5071249140.0	18130619.0	GF E1 Clean Data1.fq.gz	0:139.86 1:139.85	A:1349570050;C:1179084754;G:1191487646;T:1351106481;N:209	139	139	1349570050	1179084754	1191487646	1351106481	209	SRX13769742	SRS11649745	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94788	0.95007	0.08632	0.08584	0.66312	0.66186	0.48354	0.47951	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68116	68116	SRR17600933	SRX13769741	SRS11649744	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		CON3	CON3	GF3		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:germ free\|ID:3\|BioSampleModel:Model organism or animal	Danio rerio	GF3	GF3	con			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF3_Clean_Data1.fq.gz GF3_Clean_Data2.fq.gz	fastq fastq	6819708063.0	24463230.0	GF3 Clean Data1.fq.gz	0:139.39 1:139.39	A:1807598117;C:1598304151;G:1610340377;T:1803465151;N:267	139	139	1807598117	1598304151	1610340377	1803465151	267	SRX13769741	SRS11649744	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.95386	0.95433	0.09938	0.09846	0.6759	0.67517	0.49818	0.49068	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68117	68117	SRR17600934	SRX13769740	SRS11649743	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		WT+E.coli3	WT+E.coli3	GF WT E3		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:WT+E.coli3\|ID:12\|BioSampleModel:Model organism or animal	Danio rerio	GF WT E3	GF WT E3	WT+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_WT_E3_Clean_Data1.fq.gz GF_WT_E3_Clean_Data2.fq.gz	fastq fastq	6793678785.0	24320155.0	GF WT E3 Clean Data1.fq.gz	0:139.67 1:139.67	A:1830160129;C:1563893212;G:1574235384;T:1825389791;N:269	139	139	1830160129	1563893212	1574235384	1825389791	269	SRX13769740	SRS11649743	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.95157	0.95265	0.10564	0.10461	0.67233	0.67205	0.48987	0.48557	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68118	68118	SRR17600935	SRX13769739	SRS11649742	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		WT+E.coli2	WT+E.coli2	GF WT E2		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:WT+E.coli2\|ID:11\|BioSampleModel:Model organism or animal	Danio rerio	GF WT E2	GF WT E2	WT+E.coli			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF_WT_E2_Clean_Data1.fq.gz GF_WT_E2_Clean_Data2.fq.gz	fastq fastq	6659933953.0	23885221.0	GF WT E2 Clean Data1.fq.gz	0:139.42 1:139.41	A:1814190188;C:1513460121;G:1524770881;T:1807512517;N:246	139	139	1814190188	1513460121	1524770881	1807512517	246	SRX13769739	SRS11649742	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.94902	0.95042	0.10269	0.10195	0.67377	0.67332	0.48466	0.48375	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68119	68119	SRR17600936	SRX13769738	SRS11649741	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		CON2	CON2	GF2		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:germ free\|ID:2\|BioSampleModel:Model organism or animal	Danio rerio	GF2	GF2	con			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF2_Clean_Data2.fq.gz GF2_Clean_Data1.fq.gz	fastq fastq	6890754909.0	24743699.0	GF2 Clean Data1.fq.gz	0:139.24 1:139.24	A:1835444319;C:1603941435;G:1619476893;T:1831892000;N:262	139	139	1835444319	1603941435	1619476893	1831892000	262	SRX13769738	SRS11649741	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.95084	0.95124	0.09039	0.08916	0.66746	0.66663	0.48741	0.48096	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
68120	68120	SRR17600937	SRX13769737	SRS11649740	SRP354867	PRJNA796827	Transcriptome sequencing of LGG fed zebrafish	PRJNA796827	Other	We aimed to reveal the relationship between biofilm and intestinal immunity.		CON1	CON1	GF1		strain:not applicable\|isolate:not applicable\|dev stage:not applicable\|sex:pooled male and female\|tissue:Danio rerio\|collection date:2020 06 20\|treatment:germ free\|ID:1\|BioSampleModel:Model organism or animal	Danio rerio	GF1	GF1	con			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina NovaSeq 6000	SRP354867			GF1_Clean_Data2.fq.gz GF1_Clean_Data1.fq.gz	fastq fastq	7112715446.0	25432945.0	GF1 Clean Data1.fq.gz	0:139.84 1:139.83	A:1910488450;C:1639359800;G:1654695811;T:1908171095;N:290	139	139	1910488450	1639359800	1654695811	1908171095	290	SRX13769737	SRS11649740	SRA1356218	zhejiang university\|School of Animal Sciences	zhejiang university	2	0.95046	0.9513	0.0921	0.09027	0.66929	0.66912	0.47172	0.47162	141	141	B	B	biological fallback assumption	illumina	novaseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2022-01-13	Undetermined	Undetermined	Whole Organism	All anatomical structures
74405	74405	SRR23816189	SRX19638186	SRS17007061	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C3		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C3	C3	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C3.raw_1.fastq.gz C3.raw_2.fastq.gz	fastq fastq	11050626900.0	36835423.0	C3.raw 1.fastq.gz	0:150 1:150	A:2865145780;C:2642886672;G:2675064008;T:2866540089;N:990351	150	150	2865145780	2642886672	2675064008	2866540089	990351	SRX19638186	SRS17007061	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.9531	0.95272	0.06997	0.07085	0.6634	0.66393	0.48771	0.49045	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System
74406	74406	SRR23816190	SRX19638185	SRS17007060	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C2		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C2	C2	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C2.raw_1.fastq.gz C2.raw_2.fastq.gz	fastq fastq	9161220600.0	30537402.0	C2.raw 1.fastq.gz	0:150 1:150	A:2362480503;C:2178221545;G:2247509752;T:2372225007;N:783793	150	150	2362480503	2178221545	2247509752	2372225007	783793	SRX19638185	SRS17007060	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.95704	0.95351	0.06583	0.06694	0.66951	0.67034	0.50451	0.50466	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System
74407	74407	SRR23816191	SRX19638184	SRS17007059	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C1		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C1	C1	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C1.raw_1.fastq.gz C1.raw_2.fastq.gz	fastq fastq	6557456400.0	21858188.0	C1.raw 1.fastq.gz	0:150 1:150	A:1700751272;C:1563561339;G:1593294702;T:1699335261;N:513826	150	150	1700751272	1563561339	1593294702	1699335261	513826	SRX19638184	SRS17007059	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.9468	0.95291	0.0719	0.07405	0.6706	0.66914	0.46316	0.47396	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System
74408	74408	SRR23816192	SRX19638183	SRS17007058	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C H3		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C H3	C H3	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C_H3.raw_1.fastq.gz C_H3.raw_2.fastq.gz	fastq fastq	9295081800.0	30983606.0	C H3.raw 1.fastq.gz	0:150 1:150	A:2420308728;C:2209690139;G:2245386913;T:2418963797;N:732223	150	150	2420308728	2209690139	2245386913	2418963797	732223	SRX19638183	SRS17007058	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.94656	0.9521	0.07155	0.07386	0.66383	0.66391	0.48502	0.48282	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System
74409	74409	SRR23816193	SRX19638182	SRS17007057	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C H2		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C H2	C H2	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C_H2.raw_1.fastq.gz C_H2.raw_2.fastq.gz	fastq fastq	10811531700.0	36038439.0	C H2.raw 1.fastq.gz	0:150 1:150	A:2802038157;C:2586697803;G:2620325966;T:2801538702;N:931072	150	150	2802038157	2586697803	2620325966	2801538702	931072	SRX19638182	SRS17007057	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.95404	0.95031	0.06755	0.06783	0.66703	0.66766	0.48371	0.48209	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System
74410	74410	SRR23816194	SRX19638181	SRS17007056	SRP426733	PRJNA940583	A study of the transcriptome of zebrafish brain tissue	PRJNA940583	Other	Neurobiology of the zebrafish				C H1		collection date:2022 01\|geo loc name:China:Beijing\|lat lon:39.56 N 116.20 E\|age:missing\|breed:missing\|cultivar:missing\|dev stage:missing\|ecotype:missing\|isolate:missing\|sex:missing\|strain:missing\|tissue:missing\|BioSampleModel:Model organism or animal	brain of the zebrafish	C H1	C H1	Materials and methods			RNA-Seq	TRANSCRIPTOMIC	RANDOM	PAIRED	ILLUMINA	Illumina HiSeq 2500	SRP426733			C_H1.raw_1.fastq.gz C_H1.raw_2.fastq.gz	fastq fastq	7084951800.0	23616506.0	C H1.raw 1.fastq.gz	0:150 1:150	A:1848926248;C:1674901289;G:1707752429;T:1852765799;N:606035	150	150	1848926248	1674901289	1707752429	1852765799	606035	SRX19638181	SRS17007056	SRA1601531	Chinese Academy of Agricultural Sciences\|Institute of Quality Standard and Testing Technolo	Chinese Academy of Agricultural Sciences	2	0.95273	0.94995	0.07309	0.07329	0.66576	0.66616	0.48159	0.47398	150	150	B	B	biological fallback assumption	illumina	hiseq_era	unknown	random_priming	unknown	bulk	unknown	unknown	China	2023-03-11	Undetermined	Undetermined	Brain	Nervous System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;