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run_metadata

12 rows where devstage_curation_coarse = "Adult" and experiment.library_strategy = "WXS"

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tissue_curation_coarse 1

tissue_curation 1

technology 1

experiment.platform 1

experiment.library_strategy 1

  • WXS · 12 ✖

experiment.library_source 1

experiment.library_selection 1

experiment.library_layout 1

devstage_curation_coarse 1

  • Adult · 12 ✖

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
34593 34593 SRR32128857 SRX27475161 SRS23899211 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated4   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable10|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable10|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish10|isolation source:zebrafish10|BioSampleModel:Model organism or animal                 sample info library 10 library 10 DNA barcode10     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated4.read1.fastq.gz lighttreated4.read2.fastq.gz fastq fastq 6388100400.0 21293668.0 lighttreated4.read1.fastq.gz 0:150 1:150 A:1711345062;C:1474552325;G:1531680528;T:1670485285;N:37200 150 150     1711345062 1474552325 1531680528 1670485285 37200 SRX27475161 SRS23899211 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34594 34594 SRR32128858 SRX27475160 SRS23899210 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated3   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable9|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable9|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish9|isolation source:zebrafish9|BioSampleModel:Model organism or animal                 sample info library 9 library 9 DNA barcode9     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated3.read1.fastq.gz lighttreated3.read2.fastq.gz fastq fastq 7919383200.0 26397944.0 lighttreated3.read1.fastq.gz 0:150 1:150 A:2135212601;C:1813586654;G:1892878979;T:2077658764;N:46202 150 150     2135212601 1813586654 1892878979 2077658764 46202 SRX27475160 SRS23899210 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34595 34595 SRR32128859 SRX27475159 SRS23899209 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated2   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable8|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable8|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish8|isolation source:zebrafish8|BioSampleModel:Model organism or animal                 sample info library 8 library 8 DNA barcode8     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated2.read1.fastq.gz lighttreated2.read2.fastq.gz fastq fastq 7060994100.0 23536647.0 lighttreated2.read1.fastq.gz 0:150 1:150 A:1921099545;C:1595276449;G:1668657714;T:1875918159;N:42233 150 150     1921099545 1595276449 1668657714 1875918159 42233 SRX27475159 SRS23899209 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34596 34596 SRR32128860 SRX27475158 SRS23899208 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated1   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable7|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable7|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish7|isolation source:zebrafish7|BioSampleModel:Model organism or animal                 sample info library 7 library 7 DNA barcode7     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated1.read1.fastq.gz lighttreated1.read2.fastq.gz fastq fastq 6908625300.0 23028751.0 lighttreated1.read1.fastq.gz 0:150 1:150 A:1872190225;C:1565342714;G:1644929113;T:1826124355;N:38893 150 150     1872190225 1565342714 1644929113 1826124355 38893 SRX27475158 SRS23899208 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34597 34597 SRR32128861 SRX27475157 SRS23899207 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated6   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable6|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable6|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish6|isolation source:zebrafish6|BioSampleModel:Model organism or animal                 sample info library 6 library 6 DNA barcode6     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated6.read1.fastq.gz darktreated6.read2.fastq.gz fastq fastq 8601630900.0 28672103.0 darktreated6.read1.fastq.gz 0:150 1:150 A:2318530970;C:1973292572;G:2040962638;T:2268796005;N:48715 150 150     2318530970 1973292572 2040962638 2268796005 48715 SRX27475157 SRS23899207 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34598 34598 SRR32128862 SRX27475156 SRS23899206 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated5   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable5|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable5|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish5|isolation source:zebrafish5|BioSampleModel:Model organism or animal                 sample info library 5 library 5 DNA barcode5     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated5.read1.fastq.gz darktreated5.read2.fastq.gz fastq fastq 8265255300.0 27550851.0 darktreated5.read1.fastq.gz 0:150 1:150 A:2224219375;C:1898065838;G:1969603341;T:2173318912;N:47834 150 150     2224219375 1898065838 1969603341 2173318912 47834 SRX27475156 SRS23899206 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34599 34599 SRR32128863 SRX27475155 SRS23899205 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated4   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable4|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable4|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish4|isolation source:zebrafish4|BioSampleModel:Model organism or animal                 sample info library 4 library 4 DNA barcode4     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated4.read1.fastq.gz darktreated4.read2.fastq.gz fastq fastq 8061663600.0 26872212.0 darktreated4.read1.fastq.gz 0:150 1:150 A:2171664867;C:1853256385;G:1909447014;T:2127248788;N:46546 150 150     2171664867 1853256385 1909447014 2127248788 46546 SRX27475155 SRS23899205 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34600 34600 SRR32128864 SRX27475154 SRS23899204 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated3   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable3|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable3|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish3|isolation source:zebrafish3|BioSampleModel:Model organism or animal                 sample info library 3 library 3 DNA barcode3     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated3.read1.fastq.gz darktreated3.read2.fastq.gz fastq fastq 8287650300.0 27625501.0 darktreated3.read1.fastq.gz 0:150 1:150 A:2231337901;C:1902488349;G:1971440974;T:2182335741;N:47335 150 150     2231337901 1902488349 1971440974 2182335741 47335 SRX27475154 SRS23899204 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34601 34601 SRR32128865 SRX27475153 SRS23899203 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated6   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable12|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable12|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish12|isolation source:zebrafish12|BioSampleModel:Model organism or animal                 sample info library 12 library 12 DNA barcode12     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated6.read1.fastq.gz lighttreated6.read2.fastq.gz fastq fastq 7610579400.0 25368598.0 lighttreated6.read1.fastq.gz 0:150 1:150 A:2063115765;C:1733106391;G:1795336188;T:2018975316;N:45740 150 150     2063115765 1733106391 1795336188 2018975316 45740 SRX27475153 SRS23899203 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34602 34602 SRR32128866 SRX27475152 SRS23899202 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         lighttreated5   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable11|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable11|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish11|isolation source:zebrafish11|BioSampleModel:Model organism or animal                 sample info library 11 library 11 DNA barcode11     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     lighttreated5.read1.fastq.gz lighttreated5.read2.fastq.gz fastq fastq 6677234100.0 22257447.0 lighttreated5.read1.fastq.gz 0:150 1:150 A:1812295746;C:1506030273;G:1585674870;T:1773195250;N:37961 150 150     1812295746 1506030273 1585674870 1773195250 37961 SRX27475152 SRS23899202 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34603 34603 SRR32128867 SRX27475151 SRS23899201 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated2   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable2|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable2|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish2|isolation source:zebrafish2|BioSampleModel:Model organism or animal                 sample info library 2 library 2 DNA barcode2     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated2.read1.fastq.gz darktreated2.read2.fastq.gz fastq fastq 8723972700.0 29079909.0 darktreated2.read1.fastq.gz 0:150 1:150 A:2341340036;C:2009282478;G:2082163796;T:2291135873;N:50517 150 150     2341340036 2009282478 2082163796 2291135873 50517 SRX27475151 SRS23899201 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined
34604 34604 SRR32128868 SRX27475150 SRS23899200 SRP559934 PRJNA1215774 3 mpf dark reared zebrafish eye RNA sequencing PRJNA1215774 Other Outdoor time and light intensity are important emerging factors affecting myopia; however the underlying mechanisms remain unknown. To clarify the possible molecular mechanisms underlying myopia caused by dark environment 3 mpf zebrafish eye RNA sequencing was performed.         darktreated1   strain:not applicable|isolate:Sun Yat sen University|breed:not applicable1|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable1|collection date:2021 04 16|geo loc name:China: GuangZhou|sex:not applicable|tissue:zebrafish1|isolation source:zebrafish1|BioSampleModel:Model organism or animal                 sample info library 1 library 1 DNA barcode1     WXS TRANSCRIPTOMIC PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP559934     darktreated1.read1.fastq.gz darktreated1.read2.fastq.gz fastq fastq 7940928300.0 26469761.0 darktreated1.read1.fastq.gz 0:150 1:150 A:2133717650;C:1824526059;G:1895330033;T:2087310578;N:43980 150 150     2133717650 1824526059 1895330033 2087310578 43980 SRX27475150 SRS23899200 SRA2060897 zhujiang hospital|ophthalmology zhujiang hospital                       B B biological fallback assumption illumina novaseq_era unknown random_priming unknown bulk unknown unknown   China 2025-01-25 Undetermined Adult Undetermined Undetermined

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;