RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

190 rows where devstage_curation_coarse = "Adult" and experiment.library_selection = "RT-PCR"

✎ View and edit SQL

This data as json, CSV (advanced)

tissue_curation >10

experiment.platform 3

experiment.library_strategy 2

experiment.library_layout 2

technology 1

experiment.library_source 1

experiment.library_selection 1

  • RT-PCR · 190 ✖

devstage_curation_coarse 1

  • Adult · 190 ✖

devstage_curation 1

Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
282 282 DRR179616 DRX170142 DRS185505 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin xanthophore 03 SAMD00172019   sample name:Zebrafish pigment cell 06|cell type:Xanthophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172019 DRX170142 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>232</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172019       376558775.0 1624500.0 DRR179616 0:231.80 A:107837072;C:79508449;G:79372899;T:109840355;N:0 231       107837072 79508449 79372899 109840355 0 DRX170142 DRS185505 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.86944   0.10951   0.90425   0.59385   311   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
283 283 DRR179615 DRX170141 DRS185504 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 02 SAMD00172018   sample name:Zebrafish pigment cell 05|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172018 DRX170141 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>243</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172018       515115515.0 2124170.0 DRR179615 0:242.50 A:138421982;C:119032803;G:119412227;T:138248503;N:0 242       138421982 119032803 119412227 138248503 0 DRX170141 DRS185504 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88998   0.05858   0.88051   0.50917   284   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
284 284 DRR179614 DRX170140 DRS185503 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin xanthophore 01 SAMD00172017   sample name:Zebrafish pigment cell 04|cell type:Xanthophore|collection date:2015 09 10|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172017 DRX170140 Zebrafish fin xanthophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>247</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172017       371242152.0 1504407.0 DRR179614 0:246.77 A:99341086;C:86126839;G:86264882;T:99509345;N:0 246       99341086 86126839 86264882 99509345 0 DRX170140 DRS185503 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.88672   0.06422   0.85679   0.5066   56   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
285 285 DRR179613 DRX170139 DRS185502 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 2 Fin melanophore 03 SAMD00172016   sample name:Zebrafish pigment cell 03|cell type:Melanophore|collection date:2015 11 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172016 DRX170139 Zebrafish fin melanophore 03 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>248</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172016       342802993.0 1585538.0 DRR179613 0:216.21 A:90833658;C:80789744;G:80463233;T:90716358;N:0 216       90833658 80789744 80463233 90716358 0 DRX170139 DRS185502 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.8312   0.03528   0.88605   0.47299   285   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
286 286 DRR179612 DRX170138 DRS185501 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 02 SAMD00172015   sample name:Zebrafish pigment cell 02|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172015 DRX170138 Zebrafish fin melanophore 02 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>216</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172015       538412675.0 2168231.0 DRR179612 0:248.32 A:147128403;C:121854818;G:121564109;T:147865345;N:0 248       147128403 121854818 121564109 147865345 0 DRX170138 DRS185501 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.89106   0.07081   0.89286   0.5935   283   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
287 287 DRR179611 DRX170137 DRS185500 DRP007318 PRJDB8340 Gene expression analysis of zebrafish fin melanophores and xanthophores. DRP007318 Other Pigment cells melanophores and xanthophores were collected from zebrafish fin. Total RNAs were extracted from each melanophore and xanthophore and cDNA libraries were prepared using SMARTer Ultra Low Input RNA Kit for Sequencing v3 and Ion Xpress Plus gDNA Fragment Library Preparation. The libraries were sequenced using the Ion PGM with Ion PGM OT2 400 kit and Ion PGM Sequencing 400 kit.     Biological replicate 1 Fin melanophore 01 SAMD00172014   sample name:Zebrafish pigment cell 01|cell type:Melanophore|collection date:2015 05 12|dev stage:Adult|genotype:Wild type|tissue:Caudal fin and anal fin                 Ion Torrent PGM sequencing of SAMD00172014 DRX170137 Zebrafish fin melanophore 01 1 1   RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ION_TORRENT Ion Torrent PGM <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>215</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP007318 Ion Torrent PGM sequencing of SAMD00172014       282446840.0 1311431.0 DRR179611 0:215.37 A:74927237;C:66575483;G:66161471;T:74782649;N:0 215       74927237 66575483 66161471 74782649 0 DRX170137 DRS185500 DRA008445 OSAKA_FB|Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University Laboratory Pattern Formation, Graduate School of Frontier Biosciences, Osaka University 1 0.85938   0.0335   0.89248   0.58813   274   B   usable mapping rate ion_torrent ion_torrent full_length other smarter bulk unknown unknown   Japan 2021-05-21 Adult Adult Fin Surface Structure
33373 33373 SRR30168925 SRX25635545 SRS22279934 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax Ti 3d3 Z Hi 3d3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 3|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z Hi 3d3 Z Hi 3d3 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_Hi_3d3_R2.fastq Z_Hi_3d3_R1.fastq fastq fastq 6296371726.0 20848913.0 Z Hi 3d3 R1.fastq 0:151 1:151 A:1704155951;C:1439352121;G:1462544186;T:1690244568;N:74900 151 151     1704155951 1439352121 1462544186 1690244568 74900 SRX25635545 SRS22279934 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.9328 0.93327 0.07548 0.07488 0.71985 0.71928 0.5049 0.50889 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33374 33374 SRR30168926 SRX25635544 SRS22279933 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax Ti 3d2 Z Hi 3d2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 2|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z Hi 3d2 Z Hi 3d2 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_Hi_3d2_R1.fastq Z_Hi_3d2_R2.fastq fastq fastq 6530683862.0 21624781.0 Z Hi 3d2 R1.fastq 0:151 1:151 A:1754695891;C:1502355303;G:1526937743;T:1746614271;N:80654 151 151     1754695891 1502355303 1526937743 1746614271 80654 SRX25635544 SRS22279933 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.93139 0.93214 0.08116 0.08178 0.70981 0.70983 0.48395 0.48661 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33375 33375 SRR30168927 SRX25635543 SRS22279932 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax Ti 3d1 Z Hi 3d1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:inhibition 1|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z Hi 3d1 Z Hi 3d1 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_Hi_3d1_R1.fastq Z_Hi_3d1_R2.fastq fastq fastq 6160626350.0 20399425.0 Z Hi 3d1 R1.fastq 0:151 1:151 A:1667594818;C:1407434381;G:1429290724;T:1656232741;N:73686 151 151     1667594818 1407434381 1429290724 1656232741 73686 SRX25635543 SRS22279932 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.9337 0.93249 0.08009 0.08009 0.71242 0.71338 0.47654 0.47528 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33376 33376 SRR30168928 SRX25635542 SRS22279930 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax C 3d3 Z c 3d3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 3|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z c 3d3 Z c 3d3 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_C_3d3_R2.fastq Z_C_3d3_R1.fastq fastq fastq 5810255010.0 19239255.0 Z C 3d3 R1.fastq 0:151 1:151 A:1564226440;C:1336263606;G:1355696622;T:1553998418;N:69924 151 151     1564226440 1336263606 1355696622 1553998418 69924 SRX25635542 SRS22279930 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.92958 0.92832 0.07821 0.07745 0.70463 0.70569 0.47036 0.47581 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33377 33377 SRR30168929 SRX25635541 SRS22279931 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax C 3d2 Z c 3d2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 2|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z c 3d2 Z c 3d2 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_C_3d2_R2.fastq Z_C_3d2_R1.fastq fastq fastq 6856714606.0 22704353.0 Z C 3d2 R1.fastq 0:151 1:151 A:1850156301;C:1573942247;G:1595025700;T:1837509085;N:81273 151 151     1850156301 1573942247 1595025700 1837509085 81273 SRX25635541 SRS22279931 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.92587 0.92539 0.08056 0.08087 0.70343 0.70423 0.48091 0.47768 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33378 33378 SRR30168930 SRX25635540 SRS22279929 SRP524879 PRJNA1145574 RNA sequencing of tail fin of zebrafish PRJNA1145574 Other gene expression change post inhibition of HSP90       Ax C 3d1 Z c 3d1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3.5 month|collection date:2022 11 20|geo loc name:missing|sex:not determined|tissue:tail fin|treatment:n1 1|BioSampleModel:Model organism or animal                 tail fin regeneration of zebrafish Z c 3d1 Z c 3d1 cDNA barcode     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2500   SRP524879     Z_C_3d1_R1.fastq Z_C_3d1_R2.fastq fastq fastq 5915874074.0 19588987.0 Z C 3d1 R1.fastq 0:151 1:151 A:1601403264;C:1350219159;G:1374928971;T:1589252208;N:70472 151 151     1601403264 1350219159 1374928971 1589252208 70472 SRX25635540 SRS22279929 SRA1942523 Ocean University of China|Department of marine biology Ocean University of China 2 0.92552 0.92878 0.07906 0.07985 0.70264 0.70323 0.48016 0.48019 151 151 B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-08-08 Adult Adult Multi-tissue Multi-system
33916 33916 SRR30920839 SRX26323786 SRS22850830 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iv 1   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 PF iv 1 PF iv 1 PF iv 1 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iv_1_1.fq.gz PF_iv_1_2.fq.gz fastq fastq 7070670900.0 23568903.0 PF iv 1 1.fq.gz 0:150 1:150 A:1943964885;C:1626486936;G:1603332965;T:1896802175;N:83939 150 150     1943964885 1626486936 1603332965 1896802175 83939 SRX26323786 SRS22850830 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33917 33917 SRR30920840 SRX26323785 SRS22850828 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iii 3   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 PF iii 3 PF iii 3 PF iii 3 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iii_3_1.fq.gz PF_iii_3_2.fq.gz fastq fastq 6934323600.0 23114412.0 PF iii 3 1.fq.gz 0:150 1:150 A:1813397404;C:1659011482;G:1680744429;T:1781143700;N:26585 150 150     1813397404 1659011482 1680744429 1781143700 26585 SRX26323785 SRS22850828 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33918 33918 SRR30920841 SRX26323784 SRS22850835 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iii 2   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 PF iii 2 PF iii 2 PF iii 2 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iii_2_1.fq.gz PF_iii_2_2.fq.gz fastq fastq 7255113000.0 24183710.0 PF iii 2 1.fq.gz 0:150 1:150 A:1877711956;C:1751268862;G:1779105498;T:1846998314;N:28370 150 150     1877711956 1751268862 1779105498 1846998314 28370 SRX26323784 SRS22850835 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33919 33919 SRR30920842 SRX26323783 SRS22850829 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iii 1   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 PF iii 1 PF iii 1 PF iii 1 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iii_1_1.fq.gz PF_iii_1_2.fq.gz fastq fastq 7367112000.0 24557040.0 PF iii 1 1.fq.gz 0:150 1:150 A:1943591568;C:1745588879;G:1774109048;T:1903793252;N:29253 150 150     1943591568 1745588879 1774109048 1903793252 29253 SRX26323783 SRS22850829 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33920 33920 SRR30920843 SRX26323782 SRS22850827 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF ii 3   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 PF ii 3 PF ii 3 PF ii 3 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_ii_3_1.fq.gz PF_ii_3_2.fq.gz fastq fastq 7076391300.0 23587971.0 PF ii 3 1.fq.gz 0:150 1:150 A:1894076667;C:1654017021;G:1661713202;T:1866530077;N:54333 150 150     1894076667 1654017021 1661713202 1866530077 54333 SRX26323782 SRS22850827 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33921 33921 SRR30920844 SRX26323781 SRS22850824 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF ii 2   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 PF ii 2 PF ii 2 PF ii 2 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_ii_2_1.fq.gz PF_ii_2_2.fq.gz fastq fastq 7019128200.0 23397094.0 PF ii 2 1.fq.gz 0:150 1:150 A:1864708472;C:1652262592;G:1662746794;T:1839356863;N:53479 150 150     1864708472 1652262592 1662746794 1839356863 53479 SRX26323781 SRS22850824 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33922 33922 SRR30920845 SRX26323780 SRS22850826 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF ii 1   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China:Changsha|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 PF ii 1 PF ii 1 PF ii 1 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_ii_1_1.fq.gz PF_ii_1_2.fq.gz fastq fastq 8013867900.0 26712893.0 PF ii 1 1.fq.gz 0:150 1:150 A:2115645121;C:1898389790;G:1909480370;T:2090291064;N:61555 150 150     2115645121 1898389790 1909480370 2090291064 61555 SRX26323780 SRS22850826 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33923 33923 SRR30920846 SRX26323779 SRS22850825 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF i 3   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 PF i 3 PF i 3 PF i 3 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_i_3_1.fq.gz PF_i_3_2.fq.gz fastq fastq 8319390000.0 27731300.0 PF i 3 1.fq.gz 0:150 1:150 A:2161188519;C:1997121516;G:2035390212;T:2125657588;N:32165 150 150     2161188519 1997121516 2035390212 2125657588 32165 SRX26323779 SRS22850825 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33924 33924 SRR30920847 SRX26323778 SRS22850823 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iv 3   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 PF iv 3 PF iv 3 PF iv 3 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iv_3_1.fq.gz PF_iv_3_2.fq.gz fastq fastq 7173257700.0 23910859.0 PF iv 3 1.fq.gz 0:150 1:150 A:1875724697;C:1713434205;G:1745363776;T:1838706880;N:28142 150 150     1875724697 1713434205 1745363776 1838706880 28142 SRX26323778 SRS22850823 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33925 33925 SRR30920848 SRX26323777 SRS22850821 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF iv 2   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 PF iv 2 PF iv 2 PF iv 2 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_iv_2_1.fq.gz PF_iv_2_2.fq.gz fastq fastq 7161631500.0 23872105.0 PF iv 2 1.fq.gz 0:150 1:150 A:1890379638;C:1697508923;G:1718050265;T:1855664701;N:27973 150 150     1890379638 1697508923 1718050265 1855664701 27973 SRX26323777 SRS22850821 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33926 33926 SRR30920849 SRX26323776 SRS22850822 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF i 2   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 PF i 2 PF i 2 PF i 2 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_i_2_1.fq.gz PF_i_2_2.fq.gz fastq fastq 7036742700.0 23455809.0 PF i 2 1.fq.gz 0:150 1:150 A:1861224200;C:1662236616;G:1671149144;T:1842079812;N:52928 150 150     1861224200 1662236616 1671149144 1842079812 52928 SRX26323776 SRS22850822 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
33927 33927 SRR30920850 SRX26323775 SRS22850820 SRP537366 PRJNA1169999 Danio rerio Raw sequence reads PRJNA1169999 Other Transcriptional analysis of zebrafish         PF i 1   strain:not collecte|age:3 mpf|collection date:2023 06|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 PF i 1 PF i 1 PF i 1 the primary follicles of zebrafish     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP537366     PF_i_1_1.fq.gz PF_i_1_2.fq.gz fastq fastq 6977957400.0 23259858.0 PF i 1 1.fq.gz 0:150 1:150 A:1821299728;C:1674791787;G:1691820873;T:1790017865;N:27147 150 150     1821299728 1674791787 1691820873 1790017865 27147 SRX26323775 SRS22850820 SRA1988616 Hunan Normal University|School of Life Sciences Hunan Normal University                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-09 Adult Adult Gonad Reproductive System
34100 34100 SRR31179089 SRX26561802 SRS23067260 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         L21 L1EIC0700904 T L2.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:9|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain L21 L21 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700904-T_L2.R1.raw.fastq.gz L1EIC0700904-T_L2.R2.raw.fastq.gz fastq fastq 6755197306.0 22368203.0 L1EIC0700904 T L2.R1.raw.fastq.gz 0:151 1:151 A:1778527472;C:1586407415;G:1611223994;T:1770639781;N:8398644 151 151     1778527472 1586407415 1611223994 1770639781 8398644 SRX26561802 SRS23067260 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34101 34101 SRR31179090 SRX26561801 SRS23067261 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         L11 L1EIC0700903 T L1.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:7|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain L11 L11 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700903-T_L1.R1.raw.fastq.gz L1EIC0700903-T_L1.R2.raw.fastq.gz fastq fastq 7262619518.0 24048409.0 L1EIC0700903 T L1.R1.raw.fastq.gz 0:151 1:151 A:1897564712;C:1719515913;G:1744510723;T:1891980402;N:9047768 151 151     1897564712 1719515913 1744510723 1891980402 9047768 SRX26561801 SRS23067261 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34102 34102 SRR31179091 SRX26561800 SRS23067257 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         C31 L1EIC0700902 T C3.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:5|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain C31 C31 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700902-T_C3.R1.raw.fastq.gz L1EIC0700902-T_C3.R2.raw.fastq.gz fastq fastq 6986250560.0 23133280.0 L1EIC0700902 T C3.R1.raw.fastq.gz 0:151 1:151 A:1814714141;C:1667167814;G:1686637674;T:1809014055;N:8716876 151 151     1814714141 1667167814 1686637674 1809014055 8716876 SRX26561800 SRS23067257 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34103 34103 SRR31179092 SRX26561799 SRS23067259 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         C21 L1EIC0700901 T C2.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:3|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain C21 C21 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700901-T_C2.R1.raw.fastq.gz L1EIC0700901-T_C2.R2.raw.fastq.gz fastq fastq 7084353146.0 23458123.0 L1EIC0700901 T C2.R1.raw.fastq.gz 0:151 1:151 A:1860686893;C:1670094870;G:1691858523;T:1852823738;N:8889122 151 151     1860686893 1670094870 1691858523 1852823738 8889122 SRX26561799 SRS23067259 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34104 34104 SRR31179093 SRX26561798 SRS23067255 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         S31 L1EIC0700908 T S3.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:17|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain S31 S31 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700908-T_S3.R1.raw.fastq.gz L1EIC0700908-T_S3.R2.raw.fastq.gz fastq fastq 6992611888.0 23154344.0 L1EIC0700908 T S3.R1.raw.fastq.gz 0:151 1:151 A:1891265867;C:1594515809;G:1615494569;T:1882648469;N:8687174 151 151     1891265867 1594515809 1615494569 1882648469 8687174 SRX26561798 SRS23067255 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34105 34105 SRR31179094 SRX26561797 SRS23067258 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         S21 L1EIC0700907 T S2.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:15|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain S21 S21 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700907-T_S2.R1.raw.fastq.gz L1EIC0700907-T_S2.R2.raw.fastq.gz fastq fastq 6223201958.0 20606629.0 L1EIC0700907 T S2.R1.raw.fastq.gz 0:151 1:151 A:1635455481;C:1467707544;G:1484789988;T:1627505187;N:7743758 151 151     1635455481 1467707544 1484789988 1627505187 7743758 SRX26561797 SRS23067258 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34106 34106 SRR31179095 SRX26561796 SRS23067256 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         S11 L1EIC0700906 T S1.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:13|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain S11 S11 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700906-T_S1.R1.raw.fastq.gz L1EIC0700906-T_S1.R2.raw.fastq.gz fastq fastq 6882679660.0 22790330.0 L1EIC0700906 T S1.R1.raw.fastq.gz 0:151 1:151 A:1805328115;C:1625761692;G:1646060059;T:1796837143;N:8692651 151 151     1805328115 1625761692 1646060059 1796837143 8692651 SRX26561796 SRS23067256 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34107 34107 SRR31179096 SRX26561795 SRS23067254 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         L31 L1EIC0700905 T L3.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:11|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain L31 L31 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700905-T_L3.R1.raw.fastq.gz L1EIC0700905-T_L3.R2.raw.fastq.gz fastq fastq 6901039146.0 22851123.0 L1EIC0700905 T L3.R1.raw.fastq.gz 0:151 1:151 A:1796093025;C:1641065561;G:1664159837;T:1791078184;N:8642539 151 151     1796093025 1641065561 1664159837 1791078184 8642539 SRX26561795 SRS23067254 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34108 34108 SRR31179097 SRX26561794 SRS23067253 SRP542312 PRJNA1180208 RNA Sequencing of NPs in zebrafish brain PRJNA1180208 Other         C11 L1EIC0700900 T C1.R1   strain:AB|age:Adult|collection date:not applicable|geo loc name:Hong Kong|sex:not applicable|tissue:Brain|Tmp:1|BioSampleModel:Model organism or animal                 RNA Seq of zebrafish brain C11 C11 Adult zebrafish brain     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 3000   SRP542312     L1EIC0700900-T_C1.R1.raw.fastq.gz L1EIC0700900-T_C1.R2.raw.fastq.gz fastq fastq 10565913034.0 34986467.0 L1EIC0700900 T C1.R1.raw.fastq.gz 0:151 1:151 A:2737543425;C:2523674862;G:2563177427;T:2728317948;N:13199372 151 151     2737543425 2523674862 2563177427 2728317948 13199372 SRX26561794 SRS23067253 SRA2001903 City University of Hong Kong|School of Energy and Environmental City University of Hong Kong                       B B biological fallback assumption illumina hiseq_era unknown other unknown bulk unknown unknown   China 2024-10-31 Adult Adult Brain Nervous System
34409 34409 SRR31747815 SRX27109876 SRS23567839 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         AFB2   strain:not collected|isolate:liver AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172628 LRA172628 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     AFB2_R1.fastq.gz AFB2_R2.fastq.gz fastq fastq 7190069454.0 23808177.0 AFB2 R1.fastq.gz 0:151 1:151 A:2078244342;C:1510893083;G:1547178609;T:2053626767;N:126653 151 151     2078244342 1510893083 1547178609 2053626767 126653 SRX27109876 SRS23567839 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34410 34410 SRR31747816 SRX27109875 SRS23567837 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         AFB1   strain:not collected|isolate:liver AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172627 LRA172627 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     AFB1_R1.fastq.gz AFB1_R2.fastq.gz fastq fastq 7463779000.0 24714500.0 AFB1 R1.fastq.gz 0:151 1:151 A:2176506326;C:1554667596;G:1582400568;T:2150036004;N:168506 151 151     2176506326 1554667596 1582400568 2150036004 168506 SRX27109875 SRS23567837 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34411 34411 SRR31747817 SRX27109874 SRS23567838 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         EPO4   strain:not collected|isolate:liver EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172635 LRA172635 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     EPO4_R1.fastq.gz EPO4_R2.fastq.gz fastq fastq 8273309328.0 27395064.0 EPO4 R1.fastq.gz 0:151 1:151 A:2390853071;C:1742121394;G:1771230346;T:2368915323;N:189194 151 151     2390853071 1742121394 1771230346 2368915323 189194 SRX27109874 SRS23567838 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34412 34412 SRR31747818 SRX27109873 SRS23567836 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         EPO3   strain:not collected|isolate:liver EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172634 LRA172634 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     EPO3_R1.fastq.gz EPO3_R2.fastq.gz fastq fastq 7097420082.0 23501391.0 EPO3 R1.fastq.gz 0:151 1:151 A:2092952383;C:1451623472;G:1477150205;T:2075535584;N:158438 151 151     2092952383 1451623472 1477150205 2075535584 158438 SRX27109873 SRS23567836 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34413 34413 SRR31747819 SRX27109872 SRS23567834 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         EPO2   strain:not collected|isolate:liver EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172633 LRA172633 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     EPO2_R1.fastq.gz EPO2_R2.fastq.gz fastq fastq 7332924514.0 24281207.0 EPO2 R1.fastq.gz 0:151 1:151 A:2162671338;C:1496551996;G:1515648771;T:2157891639;N:160770 151 151     2162671338 1496551996 1515648771 2157891639 160770 SRX27109872 SRS23567834 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34414 34414 SRR31747820 SRX27109871 SRS23567835 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         EPO1   strain:not collected|isolate:liver EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172632 LRA172632 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     EPO1_R1.fastq.gz EPO1_R2.fastq.gz fastq fastq 8287626544.0 27442472.0 EPO1 R1.fastq.gz 0:151 1:151 A:2435156330;C:1694808350;G:1717315788;T:2440143946;N:202130 151 151     2435156330 1694808350 1717315788 2440143946 202130 SRX27109871 SRS23567835 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34415 34415 SRR31747821 SRX27109870 SRS23567833 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         CK5   strain:not collected|isolate:liver CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172626 LRA172626 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     CK5_R1.fastq.gz CK5_R2.fastq.gz fastq fastq 7157140280.0 23699140.0 CK5 R1.fastq.gz 0:151 1:151 A:2092635667;C:1492801085;G:1512780390;T:2058759456;N:163682 151 151     2092635667 1492801085 1512780390 2058759456 163682 SRX27109870 SRS23567833 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34416 34416 SRR31747822 SRX27109869 SRS23567832 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         CK4   strain:not collected|isolate:liver CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172625 LRA172625 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     CK4_R1.fastq.gz CK4_R2.fastq.gz fastq fastq 5903236582.0 19547141.0 CK4 R1.fastq.gz 0:151 1:151 A:1649245280;C:1297061493;G:1327173777;T:1629624071;N:131961 151 151     1649245280 1297061493 1327173777 1629624071 131961 SRX27109869 SRS23567832 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34417 34417 SRR31747823 SRX27109868 SRS23567831 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         COM5   strain:not collected|isolate:liver COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172641 LRA172641 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     COM5_R1.fastq.gz COM5_R2.fastq.gz fastq fastq 7598066924.0 25159162.0 COM5 R1.fastq.gz 0:151 1:151 A:2223131767;C:1578956803;G:1603115446;T:2192694602;N:168306 151 151     2223131767 1578956803 1603115446 2192694602 168306 SRX27109868 SRS23567831 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34418 34418 SRR31747824 SRX27109867 SRS23567830 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         COM4   strain:not collected|isolate:liver COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172640 LRA172640 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     COM4_R1.fastq.gz COM4_R2.fastq.gz fastq fastq 7633749130.0 25277315.0 COM4 R1.fastq.gz 0:151 1:151 A:2223410712;C:1603699864;G:1630586500;T:2175879626;N:172428 151 151     2223410712 1603699864 1630586500 2175879626 172428 SRX27109867 SRS23567830 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34419 34419 SRR31747825 SRX27109866 SRS23567829 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         COM3   strain:not collected|isolate:liver COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172639 LRA172639 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     COM3_R1.fastq.gz COM3_R2.fastq.gz fastq fastq 7474959946.0 24751523.0 COM3 R1.fastq.gz 0:151 1:151 A:2145268206;C:1597121014;G:1632808908;T:2099584265;N:177553 151 151     2145268206 1597121014 1632808908 2099584265 177553 SRX27109866 SRS23567829 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34420 34420 SRR31747826 SRX27109865 SRS23567827 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         COM2   strain:not collected|isolate:liver COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172638 LRA172638 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     COM2_R1.fastq.gz COM2_R2.fastq.gz fastq fastq 8791460090.0 29110795.0 COM2 R1.fastq.gz 0:151 1:151 A:2541630685;C:1869577126;G:1894336180;T:2485706665;N:209434 151 151     2541630685 1869577126 1894336180 2485706665 209434 SRX27109865 SRS23567827 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34421 34421 SRR31747827 SRX27109864 SRS23567828 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         AFB4   strain:not collected|isolate:liver AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172630 LRA172630 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     AFB4_R1.fastq.gz AFB4_R2.fastq.gz fastq fastq 7267902102.0 24065901.0 AFB4 R1.fastq.gz 0:151 1:151 A:2123758982;C:1506909715;G:1535054542;T:2102016033;N:162830 151 151     2123758982 1506909715 1535054542 2102016033 162830 SRX27109864 SRS23567828 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34422 34422 SRR31747828 SRX27109863 SRS23567826 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         AFB3   strain:not collected|isolate:liver AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172629 LRA172629 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     AFB3_R1.fastq.gz AFB3_R2.fastq.gz fastq fastq 6300108070.0 20861285.0 AFB3 R1.fastq.gz 0:151 1:151 A:1796927680;C:1350016175;G:1379242261;T:1773425050;N:496904 151 151     1796927680 1350016175 1379242261 1773425050 496904 SRX27109863 SRS23567826 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34423 34423 SRR31747829 SRX27109862 SRS23567825 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         CK2   strain:not collected|isolate:liver CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172623 LRA172623 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     CK2_R1.fastq.gz CK2_R2.fastq.gz fastq fastq 6706705770.0 22207635.0 CK2 R1.fastq.gz 0:151 1:151 A:1918005955;C:1429871875;G:1469836872;T:1888840563;N:150505 151 151     1918005955 1429871875 1469836872 1888840563 150505 SRX27109862 SRS23567825 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34424 34424 SRR31747830 SRX27109861 SRS23567824 SRP552011 PRJNA1199330 Transcriptomic analysis of zebrafish liver PRJNA1199330 Other The liver of adult female zebrafish was analyzed.Subsequently RNA seq results were used to explore the key mechanisms of liver damage caused by single and combined exposure to EPO and AFB1.         CK1   strain:not collected|isolate:liver CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:liver|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172622 LRA172622 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552011     CK1_R1.fastq.gz CK1_R2.fastq.gz fastq fastq 6319435768.0 20925284.0 CK1 R1.fastq.gz 0:151 1:151 A:1793805737;C:1361852588;G:1396171190;T:1767105304;N:500949 151 151     1793805737 1361852588 1396171190 1767105304 500949 SRX27109861 SRS23567824 SRA2036115 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Liver Liver and Biliary System
34425 34425 SRR31754963 SRX27116846 SRS23574567 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary AFB2   strain:not collected|isolate:ovary AFB2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172648 LRA172648 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     AFB2_R2.fastq.gz AFB2_R1.fastq.gz fastq fastq 8264268656.0 27365128.0 AFB2 R1.fastq.gz 0:151 1:151 A:2181967333;C:1933268479;G:1966876338;T:2182007880;N:148626 151 151     2181967333 1933268479 1966876338 2182007880 148626 SRX27116846 SRS23574567 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34426 34426 SRR31754964 SRX27116845 SRS23574566 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary AFB1   strain:not collected|isolate:ovary AFB1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172647 LRA172647 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     AFB1_R1.fastq.gz AFB1_R2.fastq.gz fastq fastq 8208094240.0 27179120.0 AFB1 R1.fastq.gz 0:151 1:151 A:2198424448;C:1899278946;G:1926174417;T:2184068899;N:147530 151 151     2198424448 1899278946 1926174417 2184068899 147530 SRX27116845 SRS23574566 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34427 34427 SRR31754965 SRX27116844 SRS23574565 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary EPO4   strain:not collected|isolate:ovary EPO4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172655 LRA172655 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     EPO4_R1.fastq.gz EPO4_R2.fastq.gz fastq fastq 6421073868.0 21261834.0 EPO4 R1.fastq.gz 0:151 1:151 A:1714628675;C:1485463411;G:1507815048;T:1712492241;N:674493 151 151     1714628675 1485463411 1507815048 1712492241 674493 SRX27116844 SRS23574565 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34428 34428 SRR31754966 SRX27116843 SRS23574564 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary EPO3   strain:not collected|isolate:ovary EPO3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172654 LRA172654 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     EPO3_R1.fastq.gz EPO3_R2.fastq.gz fastq fastq 12384393350.0 41007925.0 EPO3 R1.fastq.gz 0:151 1:151 A:3299390090;C:2870219776;G:2921073783;T:3292432295;N:1277406 151 151     3299390090 2870219776 2921073783 3292432295 1277406 SRX27116843 SRS23574564 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34429 34429 SRR31754967 SRX27116842 SRS23574563 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary EPO2   strain:not collected|isolate:ovary EPO2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172653 LRA172653 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     EPO2_R1.fastq.gz EPO2_R2.fastq.gz fastq fastq 7227706204.0 23932802.0 EPO2 R1.fastq.gz 0:151 1:151 A:1914315748;C:1683061506;G:1712969230;T:1916781383;N:578337 151 151     1914315748 1683061506 1712969230 1916781383 578337 SRX27116842 SRS23574563 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34430 34430 SRR31754968 SRX27116841 SRS23574562 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary EPO1   strain:not collected|isolate:ovary EPO1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172652 LRA172652 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     EPO1_R1.fastq.gz EPO1_R2.fastq.gz fastq fastq 7074519422.0 23425561.0 EPO1 R1.fastq.gz 0:151 1:151 A:1851567042;C:1663164001;G:1696118474;T:1863062969;N:606936 151 151     1851567042 1663164001 1696118474 1863062969 606936 SRX27116841 SRS23574562 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34431 34431 SRR31754969 SRX27116840 SRS23574561 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary CK5   strain:not collected|isolate:ovary CK4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172646 LRA172646 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     CK5_R1.fastq.gz CK5_R2.fastq.gz fastq fastq 7906135010.0 26179255.0 CK5 R1.fastq.gz 0:151 1:151 A:2103989212;C:1837685916;G:1866984480;T:2097334455;N:140947 151 151     2103989212 1837685916 1866984480 2097334455 140947 SRX27116840 SRS23574561 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34432 34432 SRR31754970 SRX27116839 SRS23574560 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary CK4   strain:not collected|isolate:ovary CK3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172645 LRA172645 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     CK4_R1.fastq.gz CK4_R2.fastq.gz fastq fastq 8147481934.0 26978417.0 CK4 R1.fastq.gz 0:151 1:151 A:2155683788;C:1900855108;G:1935489119;T:2155309457;N:144462 151 151     2155683788 1900855108 1935489119 2155309457 144462 SRX27116839 SRS23574560 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34433 34433 SRR31754971 SRX27116838 SRS23574559 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary COM5   strain:not collected|isolate:ovary COM4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172661 LRA172661 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     COM5_R1.fastq.gz COM5_R2.fastq.gz fastq fastq 6513305272.0 21567236.0 COM5 R1.fastq.gz 0:151 1:151 A:1761626217;C:1492342436;G:1510749983;T:1747915094;N:671542 151 151     1761626217 1492342436 1510749983 1747915094 671542 SRX27116838 SRS23574559 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34434 34434 SRR31754972 SRX27116837 SRS23574558 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary COM4   strain:not collected|isolate:ovary COM3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172660 LRA172660 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     COM4_R1.fastq.gz COM4_R2.fastq.gz fastq fastq 10523636054.0 34846477.0 COM4 R1.fastq.gz 0:151 1:151 A:2816366030;C:2434669480;G:2460731324;T:2810787243;N:1081977 151 151     2816366030 2434669480 2460731324 2810787243 1081977 SRX27116837 SRS23574558 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34435 34435 SRR31754973 SRX27116836 SRS23574557 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary COM3   strain:not collected|isolate:ovary COM2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172659 LRA172659 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     COM3_R1.fastq.gz COM3_R2.fastq.gz fastq fastq 5957202170.0 19725835.0 COM3 R1.fastq.gz 0:151 1:151 A:1578192296;C:1388274373;G:1405276551;T:1584848422;N:610528 151 151     1578192296 1388274373 1405276551 1584848422 610528 SRX27116836 SRS23574557 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-17 Adult Adult Gonad Reproductive System
34436 34436 SRR31754974 SRX27116835 SRS23574556 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary COM1   strain:not collected|isolate:ovary COM1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172657 LRA172657 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     COM1_R1.fastq.gz COM1_R2.fastq.gz fastq fastq 7215727676.0 23893138.0 COM1 R1.fastq.gz 0:151 1:151 A:1914653765;C:1678769921;G:1704180177;T:1917546023;N:577790 151 151     1914653765 1678769921 1704180177 1917546023 577790 SRX27116835 SRS23574556 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34437 34437 SRR31754975 SRX27116834 SRS23574555 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary AFB4   strain:not collected|isolate:ovary AFB4|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172650 LRA172650 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     AFB4_R1.fastq.gz AFB4_R2.fastq.gz fastq fastq 6275308434.0 20779167.0 AFB4 R1.fastq.gz 0:151 1:151 A:1653186447;C:1467741662;G:1493041609;T:1660678204;N:660512 151 151     1653186447 1467741662 1493041609 1660678204 660512 SRX27116834 SRS23574555 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34438 34438 SRR31754976 SRX27116833 SRS23574554 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary AFB3   strain:not collected|isolate:ovary AFB3|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172649 LRA172649 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     AFB3_R1.fastq.gz AFB3_R2.fastq.gz fastq fastq 6935349970.0 22964735.0 AFB3 R1.fastq.gz 0:151 1:151 A:1846423278;C:1610631481;G:1638136488;T:1840027935;N:130788 151 151     1846423278 1610631481 1638136488 1840027935 130788 SRX27116833 SRS23574554 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34439 34439 SRR31754977 SRX27116832 SRS23574553 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary CK3   strain:not collected|isolate:ovary CK2|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172644 LRA172644 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     CK3_R1.fastq.gz CK3_R2.fastq.gz fastq fastq 9516414714.0 31511307.0 CK3 R1.fastq.gz 0:151 1:151 A:2552809373;C:2199179689;G:2229773357;T:2534472563;N:179732 151 151     2552809373 2199179689 2229773357 2534472563 179732 SRX27116832 SRS23574553 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
34440 34440 SRR31754978 SRX27116831 SRS23574552 SRP552202 PRJNA1199694 Zebrafish ovarian RNA seq PRJNA1199694 Other Adult female zebrafish ovaries were taken for subsequent analyses.In this study we used RNA seq results to uncover the key pathways involved in ovarian damage caused by single and combined exposure to EPO and AFB1.         ovary CK2   strain:not collected|isolate:ovary CK1|breed:bred in tanks|cultivar:not collected|ecotype:wild type AB|age:7 mpf|dev stage:Adult zebrafish|collection date:2023 12 03|geo loc name:China: Zhejiang|sex:female|tissue:ovary|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 transcriptomic sequencing LRA172643 LRA172643 The mRNA with polyA tail was enriched by OligodT magnetic beads to construct a library     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina NovaSeq 6000   SRP552202     CK2_R1.fastq.gz CK2_R2.fastq.gz fastq fastq 5845696220.0 19356610.0 CK2 R1.fastq.gz 0:151 1:151 A:1536028365;C:1371120321;G:1397988722;T:1540426903;N:131909 151 151     1536028365 1371120321 1397988722 1540426903 131909 SRX27116831 SRS23574552 SRA2036776 shandong university|School of Public Health shandong university                       B B biological fallback assumption illumina novaseq_era unknown poly_a unknown bulk unknown unknown   China 2024-12-18 Adult Adult Gonad Reproductive System
38289 38289 SRR1731761 SRX828260 SRS807370 SRP051449 PRJNA266270 Danio rerio Transcriptome or Gene expression PRJNA266270 Other To identify molecular signals that initiate liver regeneration post 1/3 PH         sham operated liver transcriptome post 1/3 PH   breed:AB line|cultivar:AB line|strain:AB line|age:10 month|sex:female|tissue:liver|BioSampleModel:Model organism or animal                 sham operated liver transcriptome post 1/3 PH sham operated 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>72</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP051449     sham-operated_R1.fastq.gz sham-operated_R2.fastq.gz fastq fastq 2339904960.0 16249340.0 sham operated 0:72 1:72 A:639730953;C:549099184;G:603489762;T:545135156;N:2449905 72 72     639730953 549099184 603489762 545135156 2449905 SRX828260 SRS807370 SRA223828 Institute of Hydrobiology, Chinese Academy of Scie|The Key Laboratory of Aquatic Biodiversity and Con Chinese Academy of Sciences 2 0.9353 0.91074 0.02617 0.0253 0.86334 0.86387 0.35902 0.36066 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2016-02-05 Adult Adult Liver Liver and Biliary System
38368 38368 SRR1794626 SRX869998 SRS840790 SRP053395 PRJNA275005 Danio rerio Transcriptome or Gene expression PRJNA275005 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH     24h liver   24h   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h|BioSampleModel:Model organism or animal                 dataset of 24h seq3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053395     24h_run1_R2.fastq.gz 24h_run1_R1.fastq.gz fastq fastq 2289928608.0 15902282.0 24h run1 0:72 1:72 A:626915024;C:536371415;G:589478213;T:534770153;N:2393803 72 72     626915024 536371415 589478213 534770153 2393803 SRX869998 SRS840790 SRA237004 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92769 0.90986 0.02558 0.02455 0.8493 0.84829 0.43228 0.43547 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-04-27 Adult Adult Liver Liver and Biliary System
38369 38369 SRR1794625 SRX869996 SRS840789 SRP053395 PRJNA275005 Danio rerio Transcriptome or Gene expression PRJNA275005 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH     6h liver   6h   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h|BioSampleModel:Model organism or animal                 dataset of 6h seq2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053395         2014108128.0 13986862.0 6h run1 0:72 1:72 A:542840697;C:473739345;G:521450086;T:473979205;N:2098795 72 72     542840697 473739345 521450086 473979205 2098795 SRX869996 SRS840789 SRA237004 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92694 0.90124 0.02907 0.0277 0.85178 0.85044 0.41862 0.40751 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38370 38370 SRR1794624 SRX869994 SRS840787 SRP053395 PRJNA275005 Danio rerio Transcriptome or Gene expression PRJNA275005 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/3 PH     sham liver   sham   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h|BioSampleModel:Model organism or animal                 dataset of sham seq1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053395     sham_run1_R2.fastq.gz sham_run1_R1.fastq.gz fastq fastq 2339904960.0 16249340.0 sham run1 0:72 1:72 A:639730953;C:549099184;G:603489762;T:545135156;N:2449905 72 72     639730953 549099184 603489762 545135156 2449905 SRX869994 SRS840787 SRA237004 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.9353 0.91073 0.02617 0.02532 0.8635 0.86375 0.35879 0.36066 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-09-01 Adult Adult Liver Liver and Biliary System
38371 38371 SRR1797772 SRX872343 SRS842660 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     168h liver   168h3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h3|BioSampleModel:Model organism or animal                 dataset of 168h3 168h3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     168h3_R2.fastq.gz 168h3_R1.fastq.gz fastq fastq 1829810880.0 12707020.0 168h3 run1 0:72 1:72 A:507414236;C:419304531;G:483140650;T:415843108;N:4108355 72 72     507414236 419304531 483140650 415843108 4108355 SRX872343 SRS842660 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93139 0.91693 0.02938 0.02891 0.85786 0.85896 0.39495 0.39212 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-12 Adult Adult Liver Liver and Biliary System
38372 38372 SRR1797771 SRX872342 SRS842658 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     168h liver   168h2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h2|BioSampleModel:Model organism or animal                 dataset of 168h2 168h2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     168h2_R2.fastq.gz 168h2_R1.fastq.gz fastq fastq 1372976928.0 9534562.0 168h2 run1 0:72 1:72 A:387077556;C:311282950;G:355929958;T:317312161;N:1374303 72 72     387077556 311282950 355929958 317312161 1374303 SRX872342 SRS842658 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92667 0.9069 0.03341 0.03285 0.85498 0.85492 0.4097 0.41426 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38373 38373 SRR1797770 SRX872341 SRS842657 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     168h liver   168h1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 168h1|BioSampleModel:Model organism or animal                 dataset of 168h1 168h1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641         2340104400.0 16250725.0 168h1 run1 0:72 1:72 A:667910990;C:526343343;G:603352668;T:540093539;N:2403860 72 72     667910990 526343343 603352668 540093539 2403860 SRX872341 SRS842657 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92746 0.90675 0.03592 0.03513 0.85476 0.85439 0.42337 0.42165 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-12 Adult Adult Liver Liver and Biliary System
38374 38374 SRR1797769 SRX872340 SRS842656 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     120h liver   120h3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h3|BioSampleModel:Model organism or animal                 dataset of 120h3 120h3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     120h3_R2.fastq.gz 120h3_R1.fastq.gz fastq fastq 2124608256.0 14754224.0 120h3 run1 0:72 1:72 A:589644602;C:493725581;G:545952985;T:492854671;N:2430417 72 72     589644602 493725581 545952985 492854671 2430417 SRX872340 SRS842656 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.91869 0.89606 0.03516 0.03395 0.81251 0.81355 0.48462 0.48678 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-12 Adult Adult Liver Liver and Biliary System
38375 38375 SRR1797766 SRX872339 SRS842654 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     120h liver   120h2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h2|BioSampleModel:Model organism or animal                 dataset of 120h2 120h2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     120h2_R2.fastq.gz 120h2_R1.fastq.gz fastq fastq 3623274144.0 25161626.0 120h2 run1 0:72 1:72 A:989104008;C:844487837;G:939298291;T:842275169;N:8108839 72 72     989104008 844487837 939298291 842275169 8108839 SRX872339 SRS842654 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92813 0.91285 0.03423 0.03358 0.8229 0.82465 0.47773 0.46762 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-12 Adult Adult Liver Liver and Biliary System
38376 38376 SRR1797767 SRX872338 SRS842655 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     120h liver   120h1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 120h1|BioSampleModel:Model organism or animal                 dataset of 120h1 120h1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     120h1_R1.fastq.gz 120h1_R2.fastq.gz fastq fastq 2166956496.0 15048309.0 120h1 run1 0:72 1:72 A:598794680;C:504653997;G:556024260;T:505305435;N:2178124 72 72     598794680 504653997 556024260 505305435 2178124 SRX872338 SRS842655 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92625 0.89458 0.03686 0.03577 0.83313 0.83319 0.3839 0.38104 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38377 38377 SRR1797747 SRX872337 SRS842650 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     72h liver   72h3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h3|BioSampleModel:Model organism or animal                 dataset of 72h3 72h3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     72h3_R2.fastq.gz 72h3_R1.fastq.gz fastq fastq 2933514432.0 20371628.0 72h3 run1 0:72 1:72 A:797742153;C:682061705;G:766687384;T:683472770;N:3550420 72 72     797742153 682061705 766687384 683472770 3550420 SRX872337 SRS842650 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92802 0.91291 0.04028 0.03941 0.80823 0.8058 0.38547 0.38408 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38378 38378 SRR1797748 SRX872335 SRS842652 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     72h liver   72h2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h2|BioSampleModel:Model organism or animal                 dataset of 72h2 72h2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     72h2_R1.fastq.gz 72h2_R2.fastq.gz fastq fastq 2557417104.0 17759841.0 72h2 run1 0:72 1:72 A:696915838;C:596106147;G:665835965;T:595973685;N:2585469 72 72     696915838 596106147 665835965 595973685 2585469 SRX872335 SRS842652 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93065 0.91586 0.03416 0.03379 0.8141 0.81499 0.42586 0.43195 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38379 38379 SRR1797757 SRX872334 SRS842653 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     72h liver   72h1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 72h1|BioSampleModel:Model organism or animal                 dataset of 72h1 72h1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     72h1_R2.fastq.gz 72h1_R1.fastq.gz fastq fastq 1736716752.0 12060533.0 72h1 run1 0:72 1:72 A:475022900;C:405075078;G:460472558;T:394162576;N:1983640 72 72     475022900 405075078 460472558 394162576 1983640 SRX872334 SRS842653 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92183 0.90613 0.0358 0.03522 0.8115 0.81101 0.42319 0.42579 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38380 38380 SRR1797745 SRX872333 SRS842648 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     24h liver   24h3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h3|BioSampleModel:Model organism or animal                 dataset of 24h3 24h3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641         1569651120.0 10900355.0 24h3 run1 0:72 1:72 A:423126744;C:367185056;G:396200408;T:381254240;N:1884672 72 72     423126744 367185056 396200408 381254240 1884672 SRX872333 SRS842648 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93264 0.91619 0.03833 0.03737 0.81688 0.81572 0.43721 0.43409 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38381 38381 SRR1797746 SRX872331 SRS842649 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     24h liver   24h2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h2|BioSampleModel:Model organism or animal                 dataset of 24h2 24h2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     24h2_R2.fastq.gz 24h2_R1.fastq.gz fastq fastq 1422217008.0 9876507.0 24h2 run1 0:72 1:72 A:390236570;C:330456473;G:374590722;T:323786549;N:3146694 72 72     390236570 330456473 374590722 323786549 3146694 SRX872331 SRS842649 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.92821 0.91652 0.03889 0.03857 0.80967 0.81081 0.46985 0.47021 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38382 38382 SRR1797739 SRX872330 SRS842642 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     24h liver   24h1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 24h1|BioSampleModel:Model organism or animal                 dataset of 24h1 24h1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     24h1_R2.fastq.gz 24h1_R1.fastq.gz fastq fastq 2626902432.0 18242378.0 24h1 run1 0:72 1:72 A:714587119;C:615398392;G:680070460;T:614156384;N:2690077 72 72     714587119 615398392 680070460 614156384 2690077 SRX872330 SRS842642 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.9304 0.91251 0.03891 0.03782 0.81544 0.81497 0.44392 0.44136 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38383 38383 SRR1797742 SRX872329 SRS842643 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     6h liver   6h3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h3|BioSampleModel:Model organism or animal                 dataset of 6h3 6h3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     6h3_R2.fastq.gz 6h3_R1.fastq.gz fastq fastq 1938177648.0 13459567.0 6h3 run1 0:72 1:72 A:523126356;C:454912954;G:495840791;T:462357650;N:1939897 72 72     523126356 454912954 495840791 462357650 1939897 SRX872329 SRS842643 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93257 0.90684 0.03621 0.03457 0.83869 0.83863 0.33982 0.34227 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38384 38384 SRR1797743 SRX872328 SRS842644 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     6h liver   6h2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h2|BioSampleModel:Model organism or animal                 dataset of 6h2 6h2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     6h2_R2.fastq.gz 6h2_R1.fastq.gz fastq fastq 2319432192.0 16107168.0 6h2 run1 0:72 1:72 A:625884355;C:540703450;G:592119356;T:557909621;N:2815410 72 72     625884355 540703450 592119356 557909621 2815410 SRX872328 SRS842644 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93408 0.91082 0.0354 0.03434 0.83796 0.83749 0.31743 0.30223 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38385 38385 SRR1797744 SRX872326 SRS842646 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     6h liver   6h1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 6h1|BioSampleModel:Model organism or animal                 dataset of 6h1 6h1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     6h1_R1.fastq.gz 6h1_R2.fastq.gz fastq fastq 1185504192.0 8232668.0 6h1 run1 0:72 1:72 A:323711674;C:275906178;G:301056404;T:283638538;N:1191398 72 72     323711674 275906178 301056404 283638538 1191398 SRX872326 SRS842646 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.935 0.90283 0.03624 0.03492 0.85957 0.86011 0.3455 0.33748 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38386 38386 SRR1797731 SRX872325 SRS842639 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     sham liver   sham3   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h3|BioSampleModel:Model organism or animal                 dataset of sham3 sham3 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     sham3_R1.fastq.gz sham3_R2.fastq.gz fastq fastq 1303090560.0 9049240.0 sham3 0:72 1:72 A:359825691;C:304363785;G:341568854;T:296025320;N:1306910 72 72     359825691 304363785 341568854 296025320 1306910 SRX872325 SRS842639 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93381 0.90458 0.02771 0.02603 0.87411 0.87361 0.29605 0.29329 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
38387 38387 SRR1797734 SRX872324 SRS842640 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     sham liver   sham2   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h2|BioSampleModel:Model organism or animal                 dataset of sham2 sham2 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     sham2_R2.fastq.gz sham2_R1.fastq.gz fastq fastq 1191890880.0 8277020.0 sham2 0:72 1:72 A:326599941;C:278538295;G:311022201;T:274492630;N:1237813 72 72     326599941 278538295 311022201 274492630 1237813 SRX872324 SRS842640 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93879 0.91451 0.02936 0.02817 0.88333 0.88357 0.27449 0.27692 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-02-11 Adult Adult Liver Liver and Biliary System
38388 38388 SRR1797733 SRX872323 SRS842641 SRP053641 PRJNA275178 Danio rerio Transcriptome or Gene expression PRJNA275178 Other To investigate the transcriptional regulation in zebrafish liver during the process of regeneration post 1/9 PH     sham liver   sham1   strain:AB line|age:10 month|dev stage:adult|sex:female|tissue:liver|isolation source:regenerating livers collected at 0h1|BioSampleModel:Model organism or animal                 dataset of sham1 sham1 1 1     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina Genome Analyzer IIx <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>144</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>73</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP053641     sham1_R1.fastq.gz sham1_R2.fastq.gz fastq fastq 1459401408.0 10134732.0 sham1 0:72 1:72 A:400303022;C:340413227;G:380056042;T:336967745;N:1661372 72 72     400303022 340413227 380056042 336967745 1661372 SRX872323 SRS842641 SRA237656 Institute of Hydrobiology, Chinese Academy of Scie|Environmental genomics group Institute of Hydrobiology, Chinese Academy of Sciences 2 0.93216 0.90538 0.03151 0.03038 0.88781 0.88787 0.28115 0.27603 72 72 B B biological fallback assumption illumina early_illumina unknown other unknown bulk unknown unknown   China 2015-12-01 Adult Adult Liver Liver and Biliary System
47611 47611 SRR6671794 SRX3648486 SRS2913085 SRP132190 PRJNA432942 Zebrafish genes regulated in response to Mucor circinelloides infection PRJNA432942 Other Determination of the genes that can be important for the defense of the host to infection for Mucorales fungi using zebrafish and the fungus Mucor circinelloides as host and pathogen model respectively. Total RNA was sequenced RNA seq from abdominal organs of infected fish.         PBS2   strain:AB|dev stage:Adult|sex:not determined|tissue:Abdomen|treatment:Control innoculated with PBS|BioSampleModel:Model organism or animal                 RNA seq of Darnio rerio: uninffected PBS2 PBS2 Total RNA isolated from uninfected abdominal tissue was used to generate the library using truseq kit     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina HiSeq 2500   SRP132190     PBS2_GCCAAT_L001_R1_001_BH8U70ADXX.filt.fastq.gz fastq 792892359.0 15546909.0 PBS2 GCCAAT L001 R1 001 BH8U70ADXX.filt.fastq.gz 0:51 A:207417646;C:188867370;G:187996499;T:208448675;N:162169 51       207417646 188867370 187996499 208448675 162169 SRX3648486 SRS2913085 SRA655550 University of Murcia|Genetics and Microbiology University of Murcia 1 0.92826   0.02642   0.72815   0.45776   51   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Spain 2018-09-28 Adult Adult Trunk Surface Structure
47612 47612 SRR6671795 SRX3648485 SRS2913084 SRP132190 PRJNA432942 Zebrafish genes regulated in response to Mucor circinelloides infection PRJNA432942 Other Determination of the genes that can be important for the defense of the host to infection for Mucorales fungi using zebrafish and the fungus Mucor circinelloides as host and pathogen model respectively. Total RNA was sequenced RNA seq from abdominal organs of infected fish.         RDRZ   strain:AB|dev stage:Adult|sex:not determined|tissue:Abdomen|treatment:Infected with Mucor circinelloides spores|BioSampleModel:Model organism or animal                 RNA seq of Darnio rerio: infected with Mucor circinelloides RDRZ RDRZ Total RNA isolated from abdominal tissue infected with Mucor circinelloides was used to generate the library using truseq kit     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina HiSeq 2500   SRP132190     RDRZ_TGACCA_L001_R1_001_BH8U70ADXX.filt.fastq.gz fastq 741005418.0 14529518.0 RDRZ TGACCA L001 R1 001 BH8U70ADXX.filt.fastq.gz 0:51 A:192330774;C:178252917;G:175501754;T:194766886;N:153087 51       192330774 178252917 175501754 194766886 153087 SRX3648485 SRS2913084 SRA655550 University of Murcia|Genetics and Microbiology University of Murcia 1 0.91685   0.03703   0.70873   0.49947   51   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Spain 2018-09-28 Adult Adult Trunk Surface Structure
52238 52238 SRR9044114 SRX5820656 SRS4749302 SRP197695 PRJNA542436 Regulation of hematopoiesis and endothelium function by endocytic trafficking PRJNA542436 Other Endocytic trafficking in endothelium         CT1   strain:AB|isolate:ctrl MO fluorescence activated cell sorting 1|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal                 RNA seq of endothelial cells1 ct1 20191 ct1 20191 ctrl MO 1     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP197695     CT1.gz fastq 3222866250.0 21485775.0 CT1.gz 0:150 1:0 A:845914701;C:771891741;G:774348916;T:830705072;N:5820 150 0     845914701 771891741 774348916 830705072 5820 SRX5820656 SRS4749302 SRA885405 Chinese academy of sciences|institute of zoology Chinese academy of sciences 1 0.95232   0.09195   0.7837   0.45885   150   B   usable mapping rate illumina novaseq_era unknown other unknown bulk unknown unknown   China 2020-01-17 Adult Adult Endothelium Cardiovascular System
52239 52239 SRR9044115 SRX5820655 SRS4749299 SRP197695 PRJNA542436 Regulation of hematopoiesis and endothelium function by endocytic trafficking PRJNA542436 Other Endocytic trafficking in endothelium         CT2   strain:AB|isolate:ctrl MO fluorescence activated cell sorting 2|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal                 RNA seq of endothelial cells2 ct1 20192 ct1 20192 ctrl MO 2     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP197695     CT2.gz fastq 3992117700.0 26614118.0 CT2.gz 0:150 1:0 A:1040923084;C:961956867;G:964333886;T:1024896832;N:7031 150 0     1040923084 961956867 964333886 1024896832 7031 SRX5820655 SRS4749299 SRA885405 Chinese academy of sciences|institute of zoology Chinese academy of sciences 1 0.95545   0.087   0.78488   0.46466   150   B   usable mapping rate illumina novaseq_era unknown other unknown bulk unknown unknown   China 2019-05-11 Adult Adult Endothelium Cardiovascular System
52240 52240 SRR9044116 SRX5820654 SRS4749301 SRP197695 PRJNA542436 Regulation of hematopoiesis and endothelium function by endocytic trafficking PRJNA542436 Other Endocytic trafficking in endothelium         SCMO1   strain:AB|isolate:5c MO fluorescence activated cell sorting 3|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal                 RNA seq of endothelial cells3 5c 20191 5c 20191 5c MO 1     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP197695     SCMO1.gz fastq 2137379550.0 14249197.0 SCMO1.gz 0:150 1:0 A:558129907;C:517045618;G:515434728;T:546767387;N:1910 150 0     558129907 517045618 515434728 546767387 1910 SRX5820654 SRS4749301 SRA885405 Chinese academy of sciences|institute of zoology Chinese academy of sciences 1 0.94546   0.08686   0.78709   0.56163   150   B   usable mapping rate illumina novaseq_era unknown other unknown bulk unknown unknown   China 2020-01-17 Adult Adult Endothelium Cardiovascular System
52241 52241 SRR9044117 SRX5820653 SRS4749300 SRP197695 PRJNA542436 Regulation of hematopoiesis and endothelium function by endocytic trafficking PRJNA542436 Other Endocytic trafficking in endothelium         SCMO2   strain:AB|isolate:5c MO fluorescence activated cell sorting 4|cultivar:not applicable|ecotype:not applicable|age:1 year|sex:male and female|tissue:fli1a+ endothelium|BioSampleModel:Model organism or animal                 RNA seq of endothelial cells4 5c 20192 5c 20192 5c MO 2     RNA-Seq TRANSCRIPTOMIC RT-PCR SINGLE ILLUMINA Illumina NovaSeq 6000   SRP197695     SCMO2.gz fastq 3909804300.0 26065362.0 SCMO2.gz 0:150 1:0 A:1033271905;C:928576644;G:928527559;T:1019420939;N:7253 150 0     1033271905 928576644 928527559 1019420939 7253 SRX5820653 SRS4749300 SRA885405 Chinese academy of sciences|institute of zoology Chinese academy of sciences 1 0.94475   0.096   0.7867   0.55845   150   B   usable mapping rate illumina novaseq_era unknown other unknown bulk unknown unknown   China 2020-01-17 Adult Adult Endothelium Cardiovascular System
52281 52281 SRR9077085 SRX5852372 SRS4776365 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       body2 mock s11   breed:zebrafish|dev stage:adult|sex:NA|tissue:body6|BioSampleModel:Model organism or animal                 body2 mock WC TC 060 WC TC 060 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_060_S11.R2.fastq.gz WC_TC_060_S11.R1.fastq.gz fastq fastq 6570204104.0 43225027.0 WC TC 060 S11.R1.fastq.gz 0:101 1:51 A:1688920476;C:1591936403;G:1547543861;T:1736945913;N:4857451 101 51     1688920476 1591936403 1547543861 1736945913 4857451 SRX5852372 SRS4776365 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96893 0.96531 0.06012 0.06428 0.74002 0.74308 0.44405 0.45056 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Trunk Surface Structure
52282 52282 SRR9077086 SRX5852371 SRS4776364 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       body2 control s12   breed:zebrafish|dev stage:adult|sex:NA|tissue:body7|BioSampleModel:Model organism or animal                 body2 control WC TC 061 WC TC 061 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_061_S12.R1.fastq.gz WC_TC_061_S12.R2.fastq.gz fastq fastq 5298115192.0 34856021.0 WC TC 061 S12.R1.fastq.gz 0:101 1:51 A:1365002199;C:1284749208;G:1236476294;T:1407970678;N:3916813 101 51     1365002199 1284749208 1236476294 1407970678 3916813 SRX5852371 SRS4776364 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96855 0.96437 0.06631 0.06978 0.72819 0.73158 0.43805 0.4516 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Trunk Surface Structure
52283 52283 SRR9077087 SRX5852370 SRS4776363 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       body2 kd s13   breed:zebrafish|dev stage:adult|sex:NA|tissue:body8|BioSampleModel:Model organism or animal                 body2 kd WC TC 062 WC TC 062 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_062_S13.R1.fastq.gz WC_TC_062_S13.R2.fastq.gz fastq fastq 6381036304.0 41980502.0 WC TC 062 S13.R1.fastq.gz 0:101 1:51 A:1647560028;C:1537878827;G:1499984084;T:1690940053;N:4673312 101 51     1647560028 1537878827 1499984084 1690940053 4673312 SRX5852370 SRS4776363 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96684 0.96194 0.06383 0.06747 0.73608 0.74052 0.45347 0.4621 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Trunk Surface Structure
52284 52284 SRR9077088 SRX5852369 SRS4776362 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       body2 kd+wt s14   breed:zebrafish|dev stage:adult|sex:NA|tissue:body9|BioSampleModel:Model organism or animal                 body2 kd+wt WC TC 063 WC TC 063 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_063_S14.R1.fastq.gz WC_TC_063_S14.R2.fastq.gz fastq fastq 5465511120.0 35957310.0 WC TC 063 S14.R1.fastq.gz 0:101 1:51 A:1414511882;C:1316966059;G:1276815442;T:1453177754;N:4039983 101 51     1414511882 1316966059 1276815442 1453177754 4039983 SRX5852369 SRS4776362 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96743 0.96269 0.06264 0.06717 0.73768 0.74002 0.43946 0.44951 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Trunk Surface Structure
52285 52285 SRR9077089 SRX5852368 SRS4776361 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       head1 mock s1   breed:zebrafish|dev stage:adult|sex:NA|tissue:head1|BioSampleModel:Model organism or animal                 head1 mock WC TC 041 WC TC 041 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_041_S8.R1.fastq.gz WC_TC_041_S8.R2.fastq.gz fastq fastq 5480620528.0 36056714.0 WC TC 041 S8.R1.fastq.gz 0:101 1:51 A:1456079218;C:1286879398;G:1250199115;T:1487095432;N:367365 101 51     1456079218 1286879398 1250199115 1487095432 367365 SRX5852368 SRS4776361 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96102 0.95396 0.09057 0.09452 0.70285 0.70573 0.474 0.47396 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Head Nervous System
52286 52286 SRR9077090 SRX5852367 SRS4776360 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       head1 control s2   breed:zebrafish|dev stage:adult|sex:NA|tissue:head2|BioSampleModel:Model organism or animal                 head1 control WC TC 042 WC TC 042 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_042_S9.R1.fastq.gz WC_TC_042_S9.R2.fastq.gz fastq fastq 5011160472.0 32968161.0 WC TC 042 S9.R1.fastq.gz 0:101 1:51 A:1328768028;C:1179737412;G:1141948263;T:1360371072;N:335697 101 51     1328768028 1179737412 1141948263 1360371072 335697 SRX5852367 SRS4776360 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.96134 0.95488 0.09183 0.09597 0.70203 0.70398 0.4719 0.46265 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Head Nervous System
52287 52287 SRR9077091 SRX5852366 SRS4776359 SRP198708 PRJNA543385 mRNA sequence of zebrafish head and body PRJNA543385 Other RNA was isolated from zebrafish head and body separately and followed with standardised Illumina sequencing       head1 kd s3   breed:zebrafish|dev stage:adult|sex:NA|tissue:head3|BioSampleModel:Model organism or animal                 head1 kd WC TC 043 WC TC 043 TRUEseq standardised protocol     RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED ILLUMINA Illumina HiSeq 2000   SRP198708     WC_TC_043_S10.R1.fastq.gz WC_TC_043_S10.R2.fastq.gz fastq fastq 5709609744.0 37563222.0 WC TC 043 S10.R1.fastq.gz 0:101 1:51 A:1517831332;C:1339538042;G:1299421324;T:1552434811;N:384235 101 51     1517831332 1339538042 1299421324 1552434811 384235 SRX5852366 SRS4776359 SRA887738 Southern University of Science and Technology|Department of Biology Southern University of Science and Technology 2 0.95768 0.95177 0.10352 0.10892 0.69209 0.69556 0.4693 0.47272 101 51 B B biological fallback assumption illumina hiseq_era unknown other trueseq bulk unknown unknown   China 2019-10-08 Adult Adult Head Nervous System

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;