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22 rows where devstage_curation = "Undetermined" and experiment.library_selection = "RANDOM PCR"

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tissue_curation 3

experiment.platform 2

experiment.library_strategy 2

experiment.library_layout 2

devstage_curation_coarse 2

technology 1

experiment.library_source 1

experiment.library_selection 1

  • RANDOM PCR · 22 ✖

devstage_curation 1

  • Undetermined · 22 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
34127 34127 SRR31359854 SRX26733717 SRS23223868 SRP545360 PRJNA1186345 The pronephros/cloaca development difference between WT and gdf11 mutants at 24 hpf PRJNA1186345 Other To identify specific genes or signaling pathways or genes with altered expression in pronephric ducts and cloaca in the absence of Gdf11 we analyzed transcriptomic changes using RNA deep sequencing on WT and gdf11 mutant embryos in Tgcdh17 dsRed background at 24 hpf.         LJW KV FKDL210002409 1a   strain:LJW KV FKDL210002409 1a|isolate:zebrafish|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|collection date:2024 02 18|geo loc name:China: Anhui Medical University Hefei|sex:not applicable|tissue:zebrafish|BioSampleModel:Model organism or animal                 zebrafish mRNA sequencing LJW KV FKDL210002409 1a LJW KV FKDL210002409 1a RNA seq     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED ILLUMINA Illumina HiSeq 1000   SRP545360     LJW-KV_FKDL210002409-1a_1.clean.fq.gz LJW-KV_FKDL210002409-1a_2.clean.fq.gz fastq fastq 8667883500.0 28892945.0 LJW KV FKDL210002409 1a 1.clean.fq.gz 0:150 1:150 A:2771307253;C:1399313804;G:1767761135;T:2729383521;N:117787 150 150     2771307253 1399313804 1767761135 2729383521 117787 SRX26733717 SRS23223868 SRA2015444 Anhui Medical University|Basical Medicine Anhui Medical University                       B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2024-11-15 Undetermined Embryo Undetermined Embryo Imprecise
58533 58533 SRR11355387 SRX7957249 SRS6343356 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 3 C2 3   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 320200327 C2 320200327 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_3_1.fq.gz C2_3_2.fq.gz fastq fastq 6857650800.0 45717672.0 C2 3 1.fq.gz 0:150 1:150 A:1826466263;C:1599272942;G:1580689630;T:1851144875;N:77090 150 150     1826466263 1599272942 1580689630 1851144875 77090 SRX7957249 SRS6343356 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93222   0.02854   0.75138   0.50759   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58534 58534 SRR11355388 SRX7957248 SRS6343355 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 2 C2 2   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 220200326 C2 220200326 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_2_1.fq.gz C2_2_2.fq.gz fastq fastq 6859954800.0 45733032.0 C2 2 1.fq.gz 0:150 1:150 A:1836618967;C:1591135182;G:1572318102;T:1859806048;N:76501 150 150     1836618967 1591135182 1572318102 1859806048 76501 SRX7957248 SRS6343355 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93237   0.03248   0.74663   0.5081   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58535 58535 SRR11355389 SRX7957247 SRS6343354 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C2 1 C2 1   strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2 120200325 C2 120200325 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C2_1_1.fq.gz C2_1_2.fq.gz fastq fastq 6618974400.0 44126496.0 C2 1 1.fq.gz 0:150 1:150 A:1774116288;C:1533828286;G:1511526952;T:1799423408;N:79466 150 150     1774116288 1533828286 1511526952 1799423408 79466 SRX7957247 SRS6343354 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.9326   0.02973   0.75426   0.50678   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58536 58536 SRR11355390 SRX7957246 SRS6343353 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 3 C1 3   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 320200324 C1 320200324 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_3_1.fq.gz C1_3_2.fq.gz fastq fastq 6837729600.0 45584864.0 C1 3 1.fq.gz 0:150 1:150 A:1831266308;C:1587032733;G:1565071069;T:1853950421;N:409069 150 150     1831266308 1587032733 1565071069 1853950421 409069 SRX7957246 SRS6343353 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93541   0.03212   0.74681   0.50268   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58537 58537 SRR11355391 SRX7957245 SRS6343352 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 2 C1 2   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 220200323 C1 220200323 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_2_2.fq.gz C1_2_1.fq.gz fastq fastq 6860328000.0 45735520.0 C1 2 1.fq.gz 0:150 1:150 A:1838176072;C:1591277709;G:1569605888;T:1861063734;N:204597 150 150     1838176072 1591277709 1569605888 1861063734 204597 SRX7957245 SRS6343352 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93763   0.033   0.74617   0.50287   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58538 58538 SRR11355392 SRX7957244 SRS6343351 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C1 1 C1 1   strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1 120200322 C1 120200322 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C1_1_1.fq.gz C1_1_2.fq.gz fastq fastq 6865547700.0 45770318.0 C1 1 1.fq.gz 0:150 1:150 A:1841774713;C:1591288582;G:1570400871;T:1861867728;N:215806 150 150     1841774713 1591288582 1570400871 1861867728 215806 SRX7957244 SRS6343351 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93567   0.03152   0.74653   0.50239   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58539 58539 SRR11355393 SRX7957243 SRS6343350 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 3 C0 3   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 3|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 320200321 C0 320200321 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_3_1.fq.gz C0_3_2.fq.gz fastq fastq 6824622600.0 45497484.0 C0 3 1.fq.gz 0:150 1:150 A:1833660953;C:1578510104;G:1558095174;T:1854128169;N:228200 150 150     1833660953 1578510104 1558095174 1854128169 228200 SRX7957243 SRS6343350 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93758   0.0323   0.75024   0.50852   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58540 58540 SRR11355394 SRX7957242 SRS6343349 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 2 C0 2   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 2|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 220200320 C0 220200320 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_2_2.fq.gz C0_2_1.fq.gz fastq fastq 6819326400.0 45462176.0 C0 2 1.fq.gz 0:150 1:150 A:1837661215;C:1571877614;G:1550458835;T:1859103408;N:225328 150 150     1837661215 1571877614 1550458835 1859103408 225328 SRX7957242 SRS6343349 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93697   0.0339   0.74793   0.5035   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
58541 58541 SRR11355395 SRX7957241 SRS6343348 SRP253408 PRJNA613558 Transcriptomic assessments RNA sequencing in ovaries following treatments of gravid female zebrafish to an antibiotic mixture PRJNA613558 Other As the use of antimicrobials during pregnancy and the perinatal period may lead to adverse outcomes such as miscarriages and newborn disease the purpose of present study was to evaluate the influence of antibiotic exposure in offspring following treatments of gravid female zebrafish to an antibiotic mixture. For the F0 generation adult zebrafish AB strain at sexual maturity 150 dpf dpf were selected for experimentation 50% male and 50% pregnant female. Given a significant change occurred in eggs production and F1 survival at birth in present study combined with antibiotics bioaccumulated in ovary we suspect that antibiotic exposure might impact the ovary of F0 generation zebrafish and thus affect egg production and survival. Therefore ovaries of the F0 generation were evaluated for transcriptional effects in different antibiotics mixture exposure 0 1 and 100 ug/L using a HTS approach coupled with advanced bioinformatic tools.       C0 1 C0 1   strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:female|tissue:ovary|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|replicate:biological replicate 1|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0 120200319 C0 120200319 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP253408     C0_1_1.fq.gz C0_1_2.fq.gz fastq fastq 7030804800.0 46872032.0 C0 1 1.fq.gz 0:150 1:150 A:1891469955;C:1624531422;G:1603124564;T:1911444454;N:234405 150 150     1891469955 1624531422 1603124564 1911444454 234405 SRX7957241 SRS6343348 SRA1056819 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93519   0.0328   0.74602   0.48272   150   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-03-20 Undetermined Adult Gonad Reproductive System
60445 60445 SRR12272862 SRX8777892 SRS7048444 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C2 C2 C2 2 4   replicate:biological replicate 2|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2C220200712 C2C220200712 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C2_C2_2_4.fq fastq 542610936.0 21965958.0 C2 C2 2 4.fq.gz 0:24.70 A:95221617;C:122628624;G:167025611;T:157730855;N:4229 24       95221617 122628624 167025611 157730855 4229 SRX8777892 SRS7048444 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.8119   0.10745   0.85717   0.51338   22   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60446 60446 SRR12272863 SRX8777891 SRS7048443 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C2 C2 C2 1 4   replicate:biological replicate 1|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2C220200711 C2C220200711 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C2_C2_1_4.fq fastq 542847476.0 22614181.0 C2 C2 1 4.fq.gz 0:24.00 A:99999101;C:125407906;G:162383758;T:155055099;N:1612 24       99999101 125407906 162383758 155055099 1612 SRX8777891 SRS7048443 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.84327   0.10491   0.83256   0.52046   19   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60447 60447 SRR12272864 SRX8777890 SRS7048442 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C1 C1 C1 2 4   replicate:biological replicate 2|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1C120200712 C1C120200712 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C1_C1_2_4.fq fastq 570918284.0 22577002.0 C1 C1 2 4.fq.gz 0:25.29 A:100121235;C:130480588;G:178656113;T:161652765;N:7583 25       100121235 130480588 178656113 161652765 7583 SRX8777890 SRS7048442 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.85096   0.12542   0.82873   0.51535   22   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60448 60448 SRR12272865 SRX8777889 SRS7048441 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C1 C1 C1 1 4   replicate:biological replicate 1|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1C120200711 C1C120200711 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C1_C1_1_4.fq fastq 545089417.0 22812164.0 C1 C1 1 4.fq.gz 0:23.89 A:99851844;C:125314095;G:166401335;T:153521167;N:976 23       99851844 125314095 166401335 153521167 976 SRX8777889 SRS7048441 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.84602   0.11725   0.83159   0.51353   19   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60449 60449 SRR12272866 SRX8777888 SRS7048440 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C0 C0 C0 2 4   replicate:biological replicate 2|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0C020200712 C0C020200712 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C0_C0_2_4.fq fastq 527443144.0 23174740.0 C0 C0 2 4.fq.gz 0:22.76 A:102368401;C:120843229;G:151690193;T:152540806;N:515 22       102368401 120843229 151690193 152540806 515 SRX8777888 SRS7048440 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.83063   0.08114   0.85169   0.50894   16   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60450 60450 SRR12272867 SRX8777887 SRS7048439 SRP272672 PRJNA647444 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemiRNA PRJNA647444 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C0 C0 C0 1 4   replicate:biological replicate 1|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0C020200711 C0C020200711 RNA seq of zebrafish in different conditions     miRNA-Seq TRANSCRIPTOMIC RANDOM PCR SINGLE BGISEQ BGISEQ-500   SRP272672   loader:fastq load.py C0_C0_1_4.fq fastq 511759408.0 22673361.0 C0 C0 1 4.fq.gz 0:22.57 A:100879182;C:120237907;G:142799495;T:147842595;N:229 22       100879182 120237907 142799495 147842595 229 SRX8777887 SRS7048439 SRA1101037 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.83904   0.0823   0.84741   0.49929   22   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-08-05 Undetermined Embryo Whole Organism All anatomical structures
60496 60496 SRR12328853 SRX8829078 SRS7048444 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C2 C2 C2 2 4   replicate:biological replicate 2|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2C220200712 C2C220200712 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C2_C2_2_4_1.fq.gz C2_C2_2_4_2.fq.gz fastq fastq 6974294600.0 69742946.0 C2 C2 2 4 1.fq.gz 0:100 1:100 A:2057162032;C:1418016219;G:1425580374;T:2073535975;N:0 100 100     2057162032 1418016219 1425580374 2073535975 0 SRX8829078 SRS7048444 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93171   0.17455   0.71626   0.54961   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures
60497 60497 SRR12328854 SRX8829077 SRS7048443 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C2 C2 C2 1 4   replicate:biological replicate 1|strain:AB|isolate:C2|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:100ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C2C220200711 C2C220200711 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C2_C2_1_4_2.fq.gz C2_C2_1_4_1.fq.gz fastq fastq 6942905200.0 69429052.0 C2 C2 1 4 1.fq.gz 0:100 1:100 A:2025129308;C:1433430820;G:1434784226;T:2049560846;N:0 100 100     2025129308 1433430820 1434784226 2049560846 0 SRX8829077 SRS7048443 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93211   0.16662   0.71001   0.53674   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures
60498 60498 SRR12328855 SRX8829076 SRS7048442 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C1 C1 C1 2 4   replicate:biological replicate 2|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1C120200712 C1C120200712 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C1_C1_2_4_1.fq.gz C1_C1_2_4_2.fq.gz fastq fastq 6973657600.0 69736576.0 C1 C1 2 4 1.fq.gz 0:100 1:100 A:2050440259;C:1423350359;G:1423015668;T:2076851314;N:0 100 100     2050440259 1423350359 1423015668 2076851314 0 SRX8829076 SRS7048442 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.92911   0.1877   0.72025   0.58085   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures
60499 60499 SRR12328856 SRX8829075 SRS7048441 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C1 C1 C1 1 4   replicate:biological replicate 1|strain:AB|isolate:C1|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:1ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C1C120200711 C1C120200711 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C1_C1_1_4_1.fq.gz C1_C1_1_4_2.fq.gz fastq fastq 6746729200.0 67467292.0 C1 C1 1 4 1.fq.gz 0:100 1:100 A:2004203843;C:1356765594;G:1357760526;T:2027999237;N:0 100 100     2004203843 1356765594 1357760526 2027999237 0 SRX8829075 SRS7048441 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.92733   0.19903   0.72228   0.59259   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures
60500 60500 SRR12328857 SRX8829074 SRS7048440 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C0 C0 C0 2 4   replicate:biological replicate 2|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0C020200712 C0C020200712 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C0_C0_2_4_1.fq.gz C0_C0_2_4_2.fq.gz fastq fastq 6924724800.0 69247248.0 C0 C0 2 4 1.fq.gz 0:100 1:100 A:1974618038;C:1471821932;G:1482725702;T:1995559128;N:0 100 100     1974618038 1471821932 1482725702 1995559128 0 SRX8829074 SRS7048440 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93473   0.14676   0.69649   0.50413   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures
60501 60501 SRR12328858 SRX8829073 SRS7048439 SRP273655 PRJNA648800 mRNA and miRNA Seq in offspring post parental exposure to an antibiotic mixturemRNA PRJNA648800 Other Zebrafish embryos were exposed to environmentally relevant levels 1 and 100 ug/L of antibiotic mixtures 15 of the most commonly detected antibiotics for 150 days until sexual maturation. miRNA mRNA network analysis in offspring post parental exposure to an antibiotic mixture.       C0 C0 C0 1 4   replicate:biological replicate 1|strain:AB|isolate:C0|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:not applicable|sex:pooled male and female|tissue:the whole|collection date:2019 11 01|geo loc name:China: Shenzhen Guangdong|phenotype:0ug/L|BioSampleModel:Model organism or animal                 RNA seq of zebrafish C0C020200711 C0C020200711 RNA seq of zebrafish in different conditions     RNA-Seq TRANSCRIPTOMIC RANDOM PCR PAIRED BGISEQ BGISEQ-500   SRP273655     C0_C0_1_4_1.fq.gz C0_C0_1_4_2.fq.gz fastq fastq 6899505600.0 68995056.0 C0 C0 1 4 1.fq.gz 0:100 1:100 A:1957459931;C:1477351919;G:1482435319;T:1982258431;N:0 100 100     1957459931 1477351919 1482435319 1982258431 0 SRX8829073 SRS7048439 SRA1103962 Southern University of Science and Technology|School of Environmental Science and Engineering Southern University of Science and Technology 1 0.93567   0.14057   0.6883   0.48707   100   B   usable mapping rate bgi bgi unknown random_priming unknown bulk unknown unknown   China 2020-07-27 Undetermined Embryo Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;