RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

run_metadata

2,904 rows where devstage_curation = "Undetermined" and devstage_curation_coarse = "Embryo"

✎ View and edit SQL

This data as json, CSV (advanced)

tissue_curation >10

experiment.library_selection >10

technology 9

experiment.library_strategy 6

experiment.platform 3

experiment.library_source 2

experiment.library_layout 2

devstage_curation_coarse 1

  • Embryo · 2,904 ✖

devstage_curation 1

  • Undetermined · 2,904 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
62 62 DRR032762 DRX029568 DRS049967 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr prime5 6 3 SAMD00028159   sample name:Dr prime5 6 3|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028159 DRX029568 Dr prime5 6 3 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028159       3903332800.0 39033328.0 DRR032762 0:100 1:0 A:1050045822;C:908538410;G:900588661;T:1044116537;N:43370 100 0     1050045822 908538410 900588661 1044116537 43370 DRX029568 DRS049967 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92761   0.07976   0.69126   0.46568   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
63 63 DRR032761 DRX029567 DRS049966 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr prime5 6 2 SAMD00028158   sample name:Dr prime5 6 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028158 DRX029567 Dr prime5 6 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028158       3678549700.0 36785497.0 DRR032761 0:100 1:0 A:986526644;C:857762765;G:853417738;T:980801764;N:40789 100 0     986526644 857762765 853417738 980801764 40789 DRX029567 DRS049966 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92689   0.07872   0.6928   0.46577   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
64 64 DRR032760 DRX029566 DRS049965 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr prime5 6 1 SAMD00028157   sample name:Dr prime5 6 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime5 6|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028157 DRX029566 Dr prime5 6 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028157       3863129500.0 38631295.0 DRR032760 0:100 1:0 A:1035240477;C:901625010;G:895370149;T:1030851937;N:41927 100 0     1035240477 901625010 895370149 1030851937 41927 DRX029566 DRS049965 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92337   0.07522   0.69315   0.46516   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
65 65 DRR032759 DRX029565 DRS049964 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr prime25 2 SAMD00028156   sample name:Dr prime25 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028156 DRX029565 Dr prime25 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028156       3750136100.0 37501361.0 DRR032759 0:100 1:0 A:1013528040;C:866734984;G:862431819;T:1007403208;N:38049 100 0     1013528040 866734984 862431819 1007403208 38049 DRX029565 DRS049964 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92019   0.09079   0.68304   0.47083   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
66 66 DRR032758 DRX029564 DRS049963 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr prime25 1 SAMD00028155   sample name:Dr prime25 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:prime25|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028155 DRX029564 Dr prime25 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028155       3544862700.0 35448627.0 DRR032758 0:100 1:0 A:952135895;C:825841753;G:821757889;T:945087927;N:39236 100 0     952135895 825841753 821757889 945087927 39236 DRX029564 DRS049963 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92229   0.08344   0.68525   0.466   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
67 67 DRR032757 DRX029563 DRS049962 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 97 individuals Dr bud 2 SAMD00028154   sample name:Dr bud 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028154 DRX029563 Dr bud 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028154       4104778200.0 41047782.0 DRR032757 0:100 1:0 A:1116316188;C:944738800;G:936257056;T:1107423486;N:42670 100 0     1116316188 944738800 936257056 1107423486 42670 DRX029563 DRS049962 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92945   0.10493   0.73407   0.47824   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
68 68 DRR032756 DRX029562 DRS049961 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr bud 1 SAMD00028153   sample name:Dr bud 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:bud|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028153 DRX029562 Dr bud 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028153       4540291000.0 45402910.0 DRR032756 0:100 1:0 A:1237914068;C:1042346110;G:1033172731;T:1226799791;N:58300 100 0     1237914068 1042346110 1033172731 1226799791 58300 DRX029562 DRS049961 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92628   0.10478   0.7391   0.46461   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Undetermined Embryo Whole Organism All anatomical structures
2319 2319 ERR1289947 ERX1361553 ERS954843 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647694 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647694|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:ATH5 2 sc 2454965|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 2 sc 2454965|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#12 15249493 Illumina sequencing of library 15249493 constructed from sample accession ERS954843 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence TAGGCATGAGAGTAGA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#12.cram cram 2492206600.0 12461033.0 SC RUN 18222 2#12 0:100 1:100 A:661236051;C:588399772;G:571478215;T:671080581;N:11981 100 100     661236051 588399772 571478215 671080581 11981 ERX1361553 ERS954843 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94054 0.94077 0.10025 0.10255 0.75779 0.76019 0.4807 0.47966 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2320 2320 ERR1289946 ERX1361552 ERS954842 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647693 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647693|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:WT ctrl sc 2454964|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:WT ctrl sc 2454964|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#11 15249492 Illumina sequencing of library 15249492 constructed from sample accession ERS954842 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence TAGGCATGTATCCTCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#11.cram cram 2748114600.0 13740573.0 SC RUN 18222 2#11 0:100 1:100 A:747132237;C:630918171;G:613637334;T:756413030;N:13828 100 100     747132237 630918171 613637334 756413030 13828 ERX1361552 ERS954842 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.91201 0.911 0.09071 0.09156 0.88994 0.88988 0.47118 0.49948 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2321 2321 ERR1289945 ERX1361551 ERS954841 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647692 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:59Z|External Id:SAMEA3647692|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:59Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP3 sc 2454963|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP3 sc 2454963|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#10 15249491 Illumina sequencing of library 15249491 constructed from sample accession ERS954841 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence TAGGCATGCTCTCTAT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#10.cram cram 3366968000.0 16834840.0 SC RUN 18222 2#10 0:100 1:100 A:881918684;C:806052916;G:790157920;T:888821188;N:17292 100 100     881918684 806052916 790157920 888821188 17292 ERX1361551 ERS954841 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94171 0.94098 0.0849 0.08607 0.74862 0.75024 0.50963 0.50955 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2322 2322 ERR1289944 ERX1361550 ERS954840 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647691 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647691|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP2 sc 2454962|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP2 sc 2454962|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#9 15249490 Illumina sequencing of library 15249490 constructed from sample accession ERS954840 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence TAGGCATGTAGATCGC. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#9.cram cram 3222261000.0 16111305.0 SC RUN 18222 2#9 0:100 1:100 A:819997366;C:795302699;G:777099203;T:829845734;N:15998 100 100     819997366 795302699 777099203 829845734 15998 ERX1361550 ERS954840 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94529 0.94495 0.0603 0.06143 0.76157 0.76238 0.48847 0.4882 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2323 2323 ERR1289943 ERX1361549 ERS954839 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647690 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647690|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 high sc 2454961|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 high sc 2454961|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#8 15249489 Illumina sequencing of library 15249489 constructed from sample accession ERS954839 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTCTAAGCCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#8.cram cram 3834749800.0 19173749.0 SC RUN 18222 2#8 0:100 1:100 A:992673645;C:929008642;G:906766397;T:1006281701;N:19415 100 100     992673645 929008642 906766397 1006281701 19415 ERX1361549 ERS954839 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94351 0.94297 0.08055 0.08157 0.72853 0.73095 0.52148 0.51755 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2324 2324 ERR1289942 ERX1361548 ERS954838 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647689 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647689|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 low sc 2454960|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 low sc 2454960|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#7 15249488 Illumina sequencing of library 15249488 constructed from sample accession ERS954838 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTAAGGAGTA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#7.cram cram 1076581000.0 5382905.0 SC RUN 18222 2#7 0:100 1:100 A:285946062;C:254142940;G:242866633;T:293619980;N:5385 100 100     285946062 254142940 242866633 293619980 5385 ERX1361548 ERS954838 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.89818 0.89819 0.1022 0.10292 0.89919 0.89852 0.51448 0.51223 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2325 2325 ERR1289941 ERX1361547 ERS954837 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647688 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647688|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP2 sc 2454959|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP2 sc 2454959|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#6 15249487 Illumina sequencing of library 15249487 constructed from sample accession ERS954837 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTACTGCATA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#6.cram cram 3172834800.0 15864174.0 SC RUN 18222 2#6 0:100 1:100 A:841262183;C:748974758;G:730474017;T:852107947;N:15895 100 100     841262183 748974758 730474017 852107947 15895 ERX1361547 ERS954837 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.93515 0.93517 0.10079 0.10267 0.73403 0.73511 0.49831 0.47169 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2326 2326 ERR1289940 ERX1361546 ERS954836 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647687 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647687|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:ATH5 1 sc 2454958|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 1 sc 2454958|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#5 15249486 Illumina sequencing of library 15249486 constructed from sample accession ERS954836 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#5.cram cram 1188728400.0 5943642.0 SC RUN 18222 2#5 0:100 1:100 A:322290258;C:273659598;G:266021599;T:326751009;N:5936 100 100     322290258 273659598 266021599 326751009 5936 ERX1361546 ERS954836 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.92438 0.92391 0.12338 0.1251 0.76288 0.76479 0.48734 0.47777 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2327 2327 ERR1289939 ERX1361545 ERS954835 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647686 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647686|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP1 sc 2454957|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP1 sc 2454957|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#4 15249485 Illumina sequencing of library 15249485 constructed from sample accession ERS954835 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTAGAGTAGA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#4.cram cram 2335470400.0 11677352.0 SC RUN 18222 2#4 0:100 1:100 A:611730664;C:560095252;G:541373953;T:622259122;N:11409 100 100     611730664 560095252 541373953 622259122 11409 ERX1361545 ERS954835 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.93481 0.93465 0.10573 0.10811 0.77135 0.77303 0.50016 0.50137 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2328 2328 ERR1289938 ERX1361544 ERS954834 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647685 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647685|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP1 sc 2454956|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP1 sc 2454956|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#3 15249484 Illumina sequencing of library 15249484 constructed from sample accession ERS954834 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTTATCCTCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#3.cram cram 2932765000.0 14663825.0 SC RUN 18222 2#3 0:100 1:100 A:762543647;C:708033363;G:692599413;T:769573475;N:15102 100 100     762543647 708033363 692599413 769573475 15102 ERX1361544 ERS954834 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94442 0.94374 0.07322 0.07439 0.74383 0.74531 0.50604 0.51608 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2329 2329 ERR1289937 ERX1361543 ERS954833 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647684 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:15Z|External Id:SAMEA3647684|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:15Z|INSDC status:public|Submitter Id:RX2 GFP1 sc 2454955|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP1 sc 2454955|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#2 15249483 Illumina sequencing of library 15249483 constructed from sample accession ERS954833 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTCTCTCTAT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#2.cram cram 2432398000.0 12161990.0 SC RUN 18222 2#2 0:100 1:100 A:624543123;C:594774023;G:581130641;T:631937939;N:12274 100 100     624543123 594774023 581130641 631937939 12274 ERX1361543 ERS954833 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94225 0.94103 0.08221 0.0823 0.79289 0.79383 0.51106 0.5129 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2330 2330 ERR1289936 ERX1361542 ERS954832 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647683 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647683|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ctrl noGFP sc 2454954|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ctrl noGFP sc 2454954|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 2#1 15249482 Illumina sequencing of library 15249482 constructed from sample accession ERS954832 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 2. This submission includes reads tagged with the sequence GGACTCCTTAGATCGC. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_2#1.cram cram 361900800.0 1809504.0 SC RUN 18222 2#1 0:100 1:100 A:84553945;C:97259075;G:92615955;T:87470072;N:1753 100 100     84553945 97259075 92615955 87470072 1753 ERX1361542 ERS954832 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94897 0.95014 0.07743 0.07772 0.71969 0.72058 0.43784 0.44067 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2331 2331 ERR1289935 ERX1361541 ERS954843 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647694 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647694|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:ATH5 2 sc 2454965|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 2 sc 2454965|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#12 15249493 Illumina sequencing of library 15249493 constructed from sample accession ERS954843 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence TAGGCATGAGAGTAGA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#12.cram cram 2487554200.0 12437771.0 SC RUN 18222 1#12 0:100 1:100 A:660028585;C:587257902;G:570415230;T:669842822;N:9661 100 100     660028585 587257902 570415230 669842822 9661 ERX1361541 ERS954843 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94059 0.9397 0.09914 0.1011 0.75597 0.75862 0.48558 0.48548 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2332 2332 ERR1289934 ERX1361540 ERS954842 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647693 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:23:00Z|External Id:SAMEA3647693|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:23:00Z|INSDC status:public|Submitter Id:WT ctrl sc 2454964|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:WT ctrl sc 2454964|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#11 15249492 Illumina sequencing of library 15249492 constructed from sample accession ERS954842 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence TAGGCATGTATCCTCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#11.cram cram 2740851200.0 13704256.0 SC RUN 18222 1#11 0:100 1:100 A:745054545;C:629082779;G:612051041;T:754652050;N:10785 100 100     745054545 629082779 612051041 754652050 10785 ERX1361540 ERS954842 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.91349 0.91229 0.09216 0.09351 0.88962 0.89043 0.48978 0.5028 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2333 2333 ERR1289933 ERX1361539 ERS954841 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647692 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:59Z|External Id:SAMEA3647692|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:59Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP3 sc 2454963|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP3 sc 2454963|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#10 15249491 Illumina sequencing of library 15249491 constructed from sample accession ERS954841 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence TAGGCATGCTCTCTAT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#10.cram cram 3357950400.0 16789752.0 SC RUN 18222 1#10 0:100 1:100 A:879637755;C:803810252;G:787961249;T:886528291;N:12853 100 100     879637755 803810252 787961249 886528291 12853 ERX1361539 ERS954841 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94064 0.94017 0.08377 0.08517 0.74909 0.75136 0.50723 0.50903 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2334 2334 ERR1289932 ERX1361538 ERS954840 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647691 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647691|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP2 sc 2454962|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP2 sc 2454962|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#9 15249490 Illumina sequencing of library 15249490 constructed from sample accession ERS954840 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence TAGGCATGTAGATCGC. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#9.cram cram 3206581200.0 16032906.0 SC RUN 18222 1#9 0:100 1:100 A:816111545;C:791236086;G:773298814;T:825922398;N:12357 100 100     816111545 791236086 773298814 825922398 12357 ERX1361538 ERS954840 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94549 0.94564 0.06037 0.06105 0.76043 0.76171 0.48313 0.49555 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2335 2335 ERR1289931 ERX1361537 ERS954839 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647690 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647690|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 high sc 2454961|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 high sc 2454961|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#8 15249489 Illumina sequencing of library 15249489 constructed from sample accession ERS954839 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTCTAAGCCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#8.cram cram 3822332200.0 19111661.0 SC RUN 18222 1#8 0:100 1:100 A:989542225;C:925823012;G:903835738;T:1003115980;N:15245 100 100     989542225 925823012 903835738 1003115980 15245 ERX1361537 ERS954839 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94289 0.94174 0.07966 0.08004 0.72764 0.72906 0.51976 0.52464 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2336 2336 ERR1289930 ERX1361536 ERS954838 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647689 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647689|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 GFP2 low sc 2454960|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP2 low sc 2454960|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#7 15249488 Illumina sequencing of library 15249488 constructed from sample accession ERS954838 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTAAGGAGTA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#7.cram cram 1072510200.0 5362551.0 SC RUN 18222 1#7 0:100 1:100 A:284863902;C:253046005;G:241968135;T:292627849;N:4309 100 100     284863902 253046005 241968135 292627849 4309 ERX1361536 ERS954838 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.89703 0.89873 0.10191 0.10317 0.89921 0.8984 0.50884 0.51319 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2337 2337 ERR1289929 ERX1361535 ERS954837 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647688 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647688|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP2 sc 2454959|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP2 sc 2454959|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#6 15249487 Illumina sequencing of library 15249487 constructed from sample accession ERS954837 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTACTGCATA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#6.cram cram 3159715800.0 15798579.0 SC RUN 18222 1#6 0:100 1:100 A:837700548;C:745877706;G:727508293;T:848616717;N:12536 100 100     837700548 745877706 727508293 848616717 12536 ERX1361535 ERS954837 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.93397 0.93362 0.10011 0.10205 0.73474 0.73612 0.49003 0.49085 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2338 2338 ERR1289928 ERX1361534 ERS954836 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647687 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647687|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:ATH5 1 sc 2454958|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:ATH5 1 sc 2454958|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#5 15249486 Illumina sequencing of library 15249486 constructed from sample accession ERS954836 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTGTAAGGAG. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#5.cram cram 1184332600.0 5921663.0 SC RUN 18222 1#5 0:100 1:100 A:321129432;C:272595945;G:264945795;T:325656767;N:4661 100 100     321129432 272595945 264945795 325656767 4661 ERX1361534 ERS954836 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.92372 0.92353 0.12445 0.12616 0.76339 0.76495 0.48995 0.48259 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2339 2339 ERR1289927 ERX1361533 ERS954835 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647686 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:54Z|External Id:SAMEA3647686|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:54Z|INSDC status:public|Submitter Id:GFAP ATH5 GFP1 sc 2454957|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:GFAP ATH5 GFP1 sc 2454957|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#4 15249485 Illumina sequencing of library 15249485 constructed from sample accession ERS954835 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTAGAGTAGA. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#4.cram cram 2331489600.0 11657448.0 SC RUN 18222 1#4 0:100 1:100 A:610715735;C:559128165;G:540406653;T:621229940;N:9107 100 100     610715735 559128165 540406653 621229940 9107 ERX1361533 ERS954835 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.9338 0.93348 0.10518 0.10783 0.77155 0.77374 0.49506 0.49808 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2340 2340 ERR1289926 ERX1361532 ERS954834 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647685 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647685|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ATH5 GFP1 sc 2454956|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ATH5 GFP1 sc 2454956|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#3 15249484 Illumina sequencing of library 15249484 constructed from sample accession ERS954834 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTTATCCTCT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#3.cram cram 2923134800.0 14615674.0 SC RUN 18222 1#3 0:100 1:100 A:760057089;C:705694497;G:690249046;T:767122385;N:11783 100 100     760057089 705694497 690249046 767122385 11783 ERX1361532 ERS954834 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94509 0.94377 0.07431 0.07512 0.74367 0.74525 0.50981 0.51595 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2341 2341 ERR1289925 ERX1361531 ERS954833 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647684 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:25:15Z|External Id:SAMEA3647684|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:25:15Z|INSDC status:public|Submitter Id:RX2 GFP1 sc 2454955|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 GFP1 sc 2454955|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#2 15249483 Illumina sequencing of library 15249483 constructed from sample accession ERS954833 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTCTCTCTAT. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#2.cram cram 2423614200.0 12118071.0 SC RUN 18222 1#2 0:100 1:100 A:622254096;C:592596967;G:579007199;T:629746522;N:9416 100 100     622254096 592596967 579007199 629746522 9416 ERX1361531 ERS954833 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.94151 0.94151 0.08127 0.08228 0.79091 0.79235 0.51421 0.50953 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
2342 2342 ERR1289924 ERX1361530 ERS954832 ERP012920 PRJEB11523 Zebrafish eye populations transcriptomics Zebrafish_eye_populations_transcriptomics-sc-3967 Transcriptome Analysis To characterise the transcriptome of the stem cells and the proliferative progenitors in the retina of 5 dpf zebrafish Danio rerio eyes were prepared as follows: 20 30 eyes per condition were collected dissociated and FACS sorted. The samples were collected to RLT buffer and RNA extraction was immediately performed. cDNA and Nextera XT libraries were generated and subsequent sequencing was carried out using the Illumina HiSeq 2500 platform. ArrayExpress:E ERAD 441       SAMEA3647683 SC ArrayExpress OrganismPart:eye cell populations|ArrayExpress Sex:mixed|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2016 02 23T15:26:28Z|ENA LAST UPDATE:2018 03 09T09:22:57Z|External Id:SAMEA3647683|INSDC center name:SC|INSDC first public:2016 02 23T15:26:28Z|INSDC last update:2018 03 09T09:22:57Z|INSDC status:public|Submitter Id:RX2 ctrl noGFP sc 2454954|common name:zebrafish|sample description:eye cell populations from zebrafish embryo|sample name:RX2 ctrl noGFP sc 2454954|scientific name:Danio rerio                 Illumina HiSeq 2500 paired end sequencing SC EXP 18222 1#1 15249482 Illumina sequencing of library 15249482 constructed from sample accession ERS954832 for study accession ERP012920. This is part of an Illumina multiplexed sequencing run 18222 1. This submission includes reads tagged with the sequence GGACTCCTTAGATCGC. Nextera dual index qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP012920 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 02 23|ENA LAST UPDATE:2018 11 16 18222_1#1.cram cram 359779800.0 1798899.0 SC RUN 18222 1#1 0:100 1:100 A:84065568;C:96668644;G:92071125;T:86973168;N:1295 100 100     84065568 96668644 92071125 86973168 1295 ERX1361530 ERS954832 ERA565862 European Nucleotide Archive Wellcome Sanger Institute 2 0.9502 0.9506 0.07759 0.07791 0.71772 0.71827 0.44568 0.45005 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified nextera bulk unknown unknown   United Kingdom 2016-02-23 Undetermined Embryo Eye Sensory System
8092 8092 ERR2402432 ERX2443286 ERS2295360 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom MO rep3 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693977 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693977|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM12|common name:zebrafish|sample name:CM12|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 12 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM12.trimmed.read_1.fastq.gz CM12.trimmed.read_2.fastq.gz fastq fastq 5384061477.0 38388598.0 ena RUN DPSQ 14 03 2018 19:09:09:420 12 0:70.70 1:69.55 A:1490429493;C:1197976503;G:1220014984;T:1475615043;N:25454 70 69     1490429493 1197976503 1220014984 1475615043 25454 ERX2443286 ERS2295360 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.92285 0.9206 0.06862 0.0688 0.73983 0.74566 0.4752 0.49125 76 75 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8093 8093 ERR2402431 ERX2443285 ERS2295359 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom MO rep2 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693976 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693976|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM11|common name:zebrafish|sample name:CM11|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 11 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM11.trimmed.read_1.fastq.gz CM11.trimmed.read_2.fastq.gz fastq fastq 5472085589.0 38860681.0 ena RUN DPSQ 14 03 2018 19:09:09:420 11 0:70.98 1:69.83 A:1514986213;C:1217661004;G:1240412104;T:1499000816;N:25452 70 69     1514986213 1217661004 1240412104 1499000816 25452 ERX2443285 ERS2295359 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91987 0.91874 0.0693 0.07042 0.74042 0.74629 0.48229 0.49144 76 76 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8094 8094 ERR2402430 ERX2443284 ERS2295358 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom MO rep1 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693975 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693975|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM10|common name:zebrafish|sample name:CM10|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 10 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM10.trimmed.read_1.fastq.gz CM10.trimmed.read_2.fastq.gz fastq fastq 6091085806.0 43064771.0 ena RUN DPSQ 14 03 2018 19:09:09:420 10 0:71.33 1:70.11 A:1692450462;C:1348639943;G:1375433963;T:1674532019;N:29419 71 70     1692450462 1348639943 1375433963 1674532019 29419 ERX2443284 ERS2295358 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.92184 0.92064 0.0699 0.0704 0.74286 0.74874 0.48978 0.48997 75 73 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8095 8095 ERR2402429 ERX2443283 ERS2295357 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom uninj rep3 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693974 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693974|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM9|common name:zebrafish|sample name:CM9|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 9 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM9.trimmed.read_1.fastq.gz CM9.trimmed.read_2.fastq.gz fastq fastq 6329252570.0 45070159.0 ena RUN DPSQ 14 03 2018 19:09:09:420 9 0:70.79 1:69.64 A:1753489708;C:1407193617;G:1433449502;T:1735090181;N:29562 70 69     1753489708 1407193617 1433449502 1735090181 29562 ERX2443283 ERS2295357 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91683 0.91616 0.06775 0.06825 0.75158 0.75737 0.49386 0.49199 76 75 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8096 8096 ERR2402428 ERX2443282 ERS2295356 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom uninj rep2 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693973 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693973|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM8|common name:zebrafish|sample name:CM8|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 8 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM8.trimmed.read_1.fastq.gz CM8.trimmed.read_2.fastq.gz fastq fastq 5405185494.0 38637007.0 ena RUN DPSQ 14 03 2018 19:09:09:420 8 0:70.45 1:69.44 A:1491577735;C:1206599147;G:1229354248;T:1477628006;N:26358 70 69     1491577735 1206599147 1229354248 1477628006 26358 ERX2443282 ERS2295356 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91776 0.91567 0.07134 0.07241 0.7517 0.75716 0.47952 0.48745 73 73 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8097 8097 ERR2402427 ERX2443281 ERS2295355 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Hom uninj rep1 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693972 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693972|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM7|common name:zebrafish|sample name:CM7|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 7 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM7.trimmed.read_1.fastq.gz CM7.trimmed.read_2.fastq.gz fastq fastq 6262947202.0 44863127.0 ena RUN DPSQ 14 03 2018 19:09:09:420 7 0:70.28 1:69.32 A:1732018658;C:1394742098;G:1420957611;T:1715198292;N:30543 70 69     1732018658 1394742098 1420957611 1715198292 30543 ERX2443281 ERS2295355 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91622 0.9144 0.0754 0.07588 0.74886 0.75371 0.48672 0.48471 76 76 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8098 8098 ERR2402426 ERX2443280 ERS2295354 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het MO rep3 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693971 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693971|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM6|common name:zebrafish|sample name:CM6|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 6 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM6.trimmed.read_1.fastq.gz CM6.trimmed.read_2.fastq.gz fastq fastq 5819615834.0 41591499.0 ena RUN DPSQ 14 03 2018 19:09:09:420 6 0:70.47 1:69.45 A:1594833553;C:1309877713;G:1335153588;T:1579722744;N:28236 70 69     1594833553 1309877713 1335153588 1579722744 28236 ERX2443280 ERS2295354 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.92 0.9183 0.0573 0.05793 0.77362 0.778 0.47792 0.46987 76 75 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8099 8099 ERR2402425 ERX2443279 ERS2295353 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het MO rep2 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693970 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693970|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM5|common name:zebrafish|sample name:CM5|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 5 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM5.trimmed.read_1.fastq.gz CM5.trimmed.read_2.fastq.gz fastq fastq 5573895202.0 39518227.0 ena RUN DPSQ 14 03 2018 19:09:09:420 5 0:71.02 1:70.03 A:1530297250;C:1251775796;G:1276506882;T:1515288256;N:27018 71 70     1530297250 1251775796 1276506882 1515288256 27018 ERX2443279 ERS2295353 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.92217 0.92081 0.06807 0.06843 0.76926 0.77441 0.45543 0.48098 76 75 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8100 8100 ERR2402424 ERX2443278 ERS2295352 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het MO rep1 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693969 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693969|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM4|common name:zebrafish|sample name:CM4|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 4 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM4.trimmed.read_1.fastq.gz CM4.trimmed.read_2.fastq.gz fastq fastq 5803404091.0 41335851.0 ena RUN DPSQ 14 03 2018 19:09:09:420 4 0:70.72 1:69.67 A:1590577583;C:1305683925;G:1331895549;T:1575219146;N:27888 70 69     1590577583 1305683925 1331895549 1575219146 27888 ERX2443278 ERS2295352 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.9216 0.91971 0.05719 0.05738 0.77333 0.77761 0.47789 0.47244 76 74 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8101 8101 ERR2402423 ERX2443277 ERS2295351 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het uninj rep3 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693968 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693968|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM3|common name:zebrafish|sample name:CM3|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 3 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM3.trimmed.read_1.fastq.gz CM3.trimmed.read_2.fastq.gz fastq fastq 5992797058.0 42390223.0 ena RUN DPSQ 14 03 2018 19:09:09:420 3 0:71.26 1:70.11 A:1639390320;C:1352082344;G:1378624207;T:1622672043;N:28144 71 70     1639390320 1352082344 1378624207 1622672043 28144 ERX2443277 ERS2295351 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.92104 0.92006 0.07044 0.07056 0.77506 0.78137 0.48154 0.46497 75 75 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8102 8102 ERR2402422 ERX2443276 ERS2295350 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het uninj rep2 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693967 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693967|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM2|common name:zebrafish|sample name:CM2|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 2 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM2.trimmed.read_2.fastq.gz CM2.trimmed.read_1.fastq.gz fastq fastq 5611396868.0 39759688.0 ena RUN DPSQ 14 03 2018 19:09:09:420 2 0:71.11 1:70.02 A:1537234166;C:1262883447;G:1288444384;T:1522807333;N:27538 71 70     1537234166 1262883447 1288444384 1522807333 27538 ERX2443276 ERS2295350 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91881 0.91733 0.06861 0.06958 0.77238 0.77883 0.48415 0.47367 76 73 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
8103 8103 ERR2402421 ERX2443275 ERS2295349 ERP107516 PRJEB25583 The transcriptome of Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos ena-STUDY-DPSQ-14-03-2018-19:09:10:340-151 Other The zebrafish gene trap line qmc551 carries a gene trap transposon in intron 1 of the gene gfi1aa which a encodes a transcriptional repressor. The presence of the transposon interferes with the transcription of the gfi1aa gene during haematopoiesis. Despite the lack of Gfi1aa expression primitive red blood cell development appears to be normal due to functional redundancy with a second gene called gfi1b. Loss of Gfi1aa and Gfi1b protein expression in embryos that are homozygous for qmc551 and injected with gfi1b morpholinos leads to maturation defects in primitive red blood cells. Here we performed an RNA sequencing experiment to study the early programming of Gfi1aa and/or Gfi1b depleted primitive red blood cells. For this purpose we made use of the gene trap's gfp reporter gene expression in the primitive red blood cells to isolate these cells by fluorescence activated cell sorting from either qmc551 heterozygous or homozygous 20 hpf embryos that were or were not injected with the gfi1b morpholinos at the one cell stage. Batches of 200 embryos were dissociated in a Liberase Blendzyme solution. GFP positive primitive red blood cells were isolated by fluorescence activated cell sorting. 3 samples of between 1700 and 4000 cells were collected per batch. Total RNA was isolated from the cells of each of the 4 x 3 samples Het1 3 HetMO1 3 Hom1 3 and HomMO1 3 and used to generate full length cDNA of polyadenylated transcripts. Following cDNA amplification and library preparation paired end 75 bp reads were generated on the Illumina NextSeq500 sequencing platform. ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 03 14   Het uninj rep1 Gfi1aa and/or Gfi1b depleted primitive red blood cells in zebrafish embryos SAMEA104693966 DPSQ ENA FIRST PUBLIC:2018 10 12T17:03:15Z|ENA LAST UPDATE:2018 03 14T19:09:14Z|External Id:SAMEA104693966|INSDC center name:DPSQ|INSDC first public:2018 10 12T17:03:15Z|INSDC last update:2018 03 14T19:09:14Z|INSDC status:public|Submitter Id:CM1|common name:zebrafish|sample name:CM1|scientific name:Danio rerio                 NextSeq 500 paired end sequencing ena EXPERIMENT DPSQ 14 03 2018 19:09:09:420 1 unspecified 1     RNA-Seq TRANSCRIPTOMIC Oligo-dT PAIRED ILLUMINA NextSeq 500   ERP107516 NextSeq 500 paired end sequencing ENA FIRST PUBLIC:2018 10 12|ENA LAST UPDATE:2018 11 16 CM1.trimmed.read_1.fastq.gz CM1.trimmed.read_2.fastq.gz fastq fastq 6229432533.0 44233290.0 ena RUN DPSQ 14 03 2018 19:09:09:420 1 0:70.98 1:69.85 A:1712806281;C:1395764700;G:1423415860;T:1697416127;N:29565 70 69     1712806281 1395764700 1423415860 1697416127 29565 ERX2443275 ERS2295349 ERA1246315 European Nucleotide Archive Deep Seq department, Centre for Genetics and Genomics, The University of Nottingham, United Kingdom 2 0.91818 0.9169 0.07104 0.07095 0.77585 0.78066 0.47896 0.46653 56 56 B B biological fallback assumption illumina nextseq full_length poly_a unknown bulk unknown unknown   United Kingdom 2018-03-14 Undetermined Embryo Blood Hematopoietic System
9199 9199 ERR202605 ERX177290 ERS128273 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570565 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#8 5151818 Illumina sequencing of library 5151818 constructed from sample accession ERS128273 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#8.bam bam 2121913050.0 14146087.0 SC RUN 7991 5#8 0:75 1:75 A:567258901;C:498104770;G:490053960;T:566313017;N:182402 75 75     567258901 498104770 490053960 566313017 182402 ERX177290 ERS128273 ERA176708 SC Wellcome Sanger Institute 2 0.94 0.94028 0.03528 0.03489 0.79064 0.79178 0.47341 0.4765 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9200 9200 ERR202604 ERX177289 ERS128284 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570567 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#7 5151817 Illumina sequencing of library 5151817 constructed from sample accession ERS128284 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence CAGATC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#7.bam bam 2219955900.0 14799706.0 SC RUN 7991 5#7 0:75 1:75 A:591871553;C:522813580;G:513375455;T:591698075;N:197237 75 75     591871553 522813580 513375455 591698075 197237 ERX177289 ERS128284 ERA176708 SC Wellcome Sanger Institute 2 0.93987 0.94046 0.02941 0.02961 0.79427 0.7947 0.47542 0.47795 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9201 9201 ERR202603 ERX177288 ERS128314 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570531 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#6 5151816 Illumina sequencing of library 5151816 constructed from sample accession ERS128314 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#6.bam bam 1955600700.0 13037338.0 SC RUN 7991 5#6 0:75 1:75 A:519562252;C:462848772;G:455819957;T:517200965;N:168754 75 75     519562252 462848772 455819957 517200965 168754 ERX177288 ERS128314 ERA176708 SC Wellcome Sanger Institute 2 0.93833 0.93957 0.03684 0.0371 0.79608 0.79663 0.47421 0.47624 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9202 9202 ERR202602 ERX177287 ERS128270 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570571 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#5 5151815 Illumina sequencing of library 5151815 constructed from sample accession ERS128270 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence ACAGTG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#5.bam bam 2016609300.0 13444062.0 SC RUN 7991 5#5 0:75 1:75 A:538289622;C:474363061;G:465399227;T:538378222;N:179168 75 75     538289622 474363061 465399227 538378222 179168 ERX177287 ERS128270 ERA176708 SC Wellcome Sanger Institute 2 0.93831 0.93934 0.03188 0.03148 0.79582 0.79632 0.47508 0.4759 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9203 9203 ERR202601 ERX177286 ERS128290 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570529 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#4 5151814 Illumina sequencing of library 5151814 constructed from sample accession ERS128290 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#4.bam bam 2365931250.0 15772875.0 SC RUN 7991 5#4 0:75 1:75 A:636503744;C:554252371;G:544819310;T:630147977;N:207848 75 75     636503744 554252371 544819310 630147977 207848 ERX177286 ERS128290 ERA176708 SC Wellcome Sanger Institute 2 0.93407 0.93465 0.04392 0.04349 0.79742 0.79888 0.48491 0.48861 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9204 9204 ERR202600 ERX177285 ERS128281 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570538 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#3 5151813 Illumina sequencing of library 5151813 constructed from sample accession ERS128281 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence TTAGGC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#3.bam bam 1867481400.0 12449876.0 SC RUN 7991 5#3 0:75 1:75 A:496520844;C:442045683;G:434406743;T:494345170;N:162960 75 75     496520844 442045683 434406743 494345170 162960 ERX177285 ERS128281 ERA176708 SC Wellcome Sanger Institute 2 0.93762 0.93824 0.03692 0.03672 0.80099 0.80178 0.48162 0.48265 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9205 9205 ERR202599 ERX177284 ERS128267 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570539 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#2 5151812 Illumina sequencing of library 5151812 constructed from sample accession ERS128267 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#2.bam bam 1972001850.0 13146679.0 SC RUN 7991 5#2 0:75 1:75 A:523509540;C:467622710;G:461161908;T:519533355;N:174337 75 75     523509540 467622710 461161908 519533355 174337 ERX177284 ERS128267 ERA176708 SC Wellcome Sanger Institute 2 0.93849 0.93832 0.0458 0.04569 0.80202 0.80255 0.48921 0.48689 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9206 9206 ERR202598 ERX177283 ERS128323 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570532 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 5#1 5151811 Illumina sequencing of library 5151811 constructed from sample accession ERS128323 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 5. This submission includes reads tagged with the sequence ATCACG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_5#1.bam bam 1747053750.0 11647025.0 SC RUN 7991 5#1 0:75 1:75 A:458130779;C:420533667;G:414256535;T:453983497;N:149272 75 75     458130779 420533667 414256535 453983497 149272 ERX177283 ERS128323 ERA176708 SC Wellcome Sanger Institute 2 0.93785 0.9385 0.05909 0.05935 0.80734 0.80844 0.50928 0.50801 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9207 9207 ERR202597 ERX177282 ERS128279 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570560 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#14 5151824 Illumina sequencing of library 5151824 constructed from sample accession ERS128279 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence AGTTCC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#14.bam bam 1981705350.0 13211369.0 SC RUN 7991 4#14 0:75 1:75 A:490981094;C:506542368;G:496976502;T:487030001;N:175385 75 75     490981094 506542368 496976502 487030001 175385 ERX177282 ERS128279 ERA176708 SC Wellcome Sanger Institute 2 0.94913 0.94988 0.11934 0.11735 0.79389 0.79506 0.55798 0.55984 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9208 9208 ERR202596 ERX177281 ERS128320 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570554 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#13 5151823 Illumina sequencing of library 5151823 constructed from sample accession ERS128320 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence AGTCAA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#13.bam bam 1995771750.0 13305145.0 SC RUN 7991 4#13 0:75 1:75 A:536200962;C:466283583;G:457887165;T:535220047;N:179993 75 75     536200962 466283583 457887165 535220047 179993 ERX177281 ERS128320 ERA176708 SC Wellcome Sanger Institute 2 0.93868 0.93911 0.03171 0.03166 0.78188 0.7819 0.47614 0.47694 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9209 9209 ERR202595 ERX177280 ERS128287 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570547 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#12 5151822 Illumina sequencing of library 5151822 constructed from sample accession ERS128287 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence CTTGTA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#12.bam bam 2261625600.0 15077504.0 SC RUN 7991 4#12 0:75 1:75 A:608829925;C:527074335;G:515433838;T:610082988;N:204514 75 75     608829925 527074335 515433838 610082988 204514 ERX177280 ERS128287 ERA176708 SC Wellcome Sanger Institute 2 0.93429 0.93602 0.03326 0.03323 0.78356 0.78415 0.4783 0.47905 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9210 9210 ERR202594 ERX177279 ERS128276 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570530 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#11 5151821 Illumina sequencing of library 5151821 constructed from sample accession ERS128276 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence GGCTAC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#11.bam bam 1864306650.0 12428711.0 SC RUN 7991 4#11 0:75 1:75 A:496583931;C:439468591;G:431127617;T:496960970;N:165541 75 75     496583931 439468591 431127617 496960970 165541 ERX177279 ERS128276 ERA176708 SC Wellcome Sanger Institute 2 0.93737 0.93919 0.03019 0.03053 0.78472 0.78545 0.47617 0.47092 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9211 9211 ERR202593 ERX177278 ERS128293 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570568 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#10 5151820 Illumina sequencing of library 5151820 constructed from sample accession ERS128293 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence TAGCTT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#10.bam bam 2202540150.0 14683601.0 SC RUN 7991 4#10 0:75 1:75 A:592834648;C:513214690;G:504159061;T:592128872;N:202879 75 75     592834648 513214690 504159061 592128872 202879 ERX177278 ERS128293 ERA176708 SC Wellcome Sanger Institute 2 0.9379 0.93859 0.03096 0.03116 0.78896 0.78969 0.4757 0.47516 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9212 9212 ERR202592 ERX177277 ERS128306 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570546 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#9 5151819 Illumina sequencing of library 5151819 constructed from sample accession ERS128306 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence GATCAG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#9.bam bam 2046450450.0 13643003.0 SC RUN 7991 4#9 0:75 1:75 A:550418673;C:477579035;G:470025972;T:548246265;N:180505 75 75     550418673 477579035 470025972 548246265 180505 ERX177277 ERS128306 ERA176708 SC Wellcome Sanger Institute 2 0.93837 0.93803 0.03318 0.03292 0.78932 0.78926 0.47721 0.47833 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9213 9213 ERR202591 ERX177276 ERS128273 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570565 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#8 5151818 Illumina sequencing of library 5151818 constructed from sample accession ERS128273 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#8.bam bam 2146032300.0 14306882.0 SC RUN 7991 4#8 0:75 1:75 A:574474648;C:503052481;G:495171322;T:573140749;N:193100 75 75     574474648 503052481 495171322 573140749 193100 ERX177276 ERS128273 ERA176708 SC Wellcome Sanger Institute 2 0.93887 0.93954 0.03558 0.03582 0.7919 0.79241 0.47725 0.4787 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9214 9214 ERR202590 ERX177275 ERS128284 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570567 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#7 5151817 Illumina sequencing of library 5151817 constructed from sample accession ERS128284 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence CAGATC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#7.bam bam 2238267300.0 14921782.0 SC RUN 7991 4#7 0:75 1:75 A:597541807;C:526350654;G:517089680;T:597082511;N:202648 75 75     597541807 526350654 517089680 597082511 202648 ERX177275 ERS128284 ERA176708 SC Wellcome Sanger Institute 2 0.93861 0.9405 0.02965 0.02985 0.79364 0.79385 0.47603 0.47625 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9215 9215 ERR202589 ERX177274 ERS128314 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570531 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#6 5151816 Illumina sequencing of library 5151816 constructed from sample accession ERS128314 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#6.bam bam 1974823650.0 13165491.0 SC RUN 7991 4#6 0:75 1:75 A:525373810;C:466687779;G:459819481;T:522768904;N:173676 75 75     525373810 466687779 459819481 522768904 173676 ERX177274 ERS128314 ERA176708 SC Wellcome Sanger Institute 2 0.93806 0.93893 0.03675 0.0363 0.79511 0.79561 0.48385 0.48225 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9216 9216 ERR202588 ERX177273 ERS128270 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570571 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#5 5151815 Illumina sequencing of library 5151815 constructed from sample accession ERS128270 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence ACAGTG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#5.bam bam 2048949000.0 13659660.0 SC RUN 7991 4#5 0:75 1:75 A:547633159;C:481206721;G:472394846;T:547531589;N:182685 75 75     547633159 481206721 472394846 547531589 182685 ERX177273 ERS128270 ERA176708 SC Wellcome Sanger Institute 2 0.93912 0.94025 0.03184 0.03173 0.7962 0.79717 0.47256 0.46963 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9217 9217 ERR202587 ERX177272 ERS128290 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570529 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#4 5151814 Illumina sequencing of library 5151814 constructed from sample accession ERS128290 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#4.bam bam 2397136950.0 15980913.0 SC RUN 7991 4#4 0:75 1:75 A:645756664;C:560617608;G:551403590;T:639141308;N:217780 75 75     645756664 560617608 551403590 639141308 217780 ERX177272 ERS128290 ERA176708 SC Wellcome Sanger Institute 2 0.93298 0.93415 0.04429 0.04429 0.79951 0.80002 0.48808 0.4893 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9218 9218 ERR202586 ERX177271 ERS128281 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570538 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#3 5151813 Illumina sequencing of library 5151813 constructed from sample accession ERS128281 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence TTAGGC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#3.bam bam 1898116050.0 12654107.0 SC RUN 7991 4#3 0:75 1:75 A:505392252;C:448615309;G:441023506;T:502913555;N:171428 75 75     505392252 448615309 441023506 502913555 171428 ERX177271 ERS128281 ERA176708 SC Wellcome Sanger Institute 2 0.93715 0.93909 0.03779 0.03782 0.80158 0.80127 0.48326 0.47856 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9219 9219 ERR202585 ERX177270 ERS128267 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570539 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#2 5151812 Illumina sequencing of library 5151812 constructed from sample accession ERS128267 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#2.bam bam 1999522350.0 13330149.0 SC RUN 7991 4#2 0:75 1:75 A:531561607;C:473366722;G:467074052;T:527343528;N:176441 75 75     531561607 473366722 467074052 527343528 176441 ERX177270 ERS128267 ERA176708 SC Wellcome Sanger Institute 2 0.93778 0.93895 0.0452 0.04522 0.80206 0.80273 0.49236 0.48956 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9220 9220 ERR202584 ERX177269 ERS128323 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570532 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 4#1 5151811 Illumina sequencing of library 5151811 constructed from sample accession ERS128323 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 4. This submission includes reads tagged with the sequence ATCACG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_4#1.bam bam 1775218500.0 11834790.0 SC RUN 7991 4#1 0:75 1:75 A:466226290;C:426610287;G:420392247;T:461832087;N:157589 75 75     466226290 426610287 420392247 461832087 157589 ERX177269 ERS128323 ERA176708 SC Wellcome Sanger Institute 2 0.93845 0.93837 0.05925 0.05885 0.80736 0.80773 0.50767 0.51351 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9221 9221 ERR202583 ERX177268 ERS128279 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570560 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#14 5151824 Illumina sequencing of library 5151824 constructed from sample accession ERS128279 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence AGTTCC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#14.bam bam 1815365250.0 12102435.0 SC RUN 7991 3#14 0:75 1:75 A:449782753;C:463627745;G:454537452;T:447256720;N:160580 75 75     449782753 463627745 454537452 447256720 160580 ERX177268 ERS128279 ERA176708 SC Wellcome Sanger Institute 2 0.95092 0.95048 0.11569 0.11332 0.79194 0.79249 0.56222 0.56601 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9222 9222 ERR202582 ERX177267 ERS128320 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570554 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#13 5151823 Illumina sequencing of library 5151823 constructed from sample accession ERS128320 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence AGTCAA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#13.bam bam 1857239250.0 12381595.0 SC RUN 7991 3#13 0:75 1:75 A:497768819;C:435075444;G:426744145;T:497478261;N:172581 75 75     497768819 435075444 426744145 497478261 172581 ERX177267 ERS128320 ERA176708 SC Wellcome Sanger Institute 2 0.93996 0.93977 0.0316 0.03153 0.78102 0.78121 0.47463 0.47646 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9223 9223 ERR202581 ERX177266 ERS128287 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570547 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#12 5151822 Illumina sequencing of library 5151822 constructed from sample accession ERS128287 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence CTTGTA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#12.bam bam 2100862650.0 14005751.0 SC RUN 7991 3#12 0:75 1:75 A:564157535;C:490878789;G:479532066;T:566093194;N:201066 75 75     564157535 490878789 479532066 566093194 201066 ERX177266 ERS128287 ERA176708 SC Wellcome Sanger Institute 2 0.93423 0.93542 0.03251 0.03237 0.78378 0.78419 0.47701 0.47611 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9224 9224 ERR202580 ERX177265 ERS128276 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570530 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#11 5151821 Illumina sequencing of library 5151821 constructed from sample accession ERS128276 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence GGCTAC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#11.bam bam 1806419400.0 12042796.0 SC RUN 7991 3#11 0:75 1:75 A:480009838;C:426886329;G:418328002;T:481030772;N:164459 75 75     480009838 426886329 418328002 481030772 164459 ERX177265 ERS128276 ERA176708 SC Wellcome Sanger Institute 2 0.93961 0.94017 0.02933 0.02901 0.78695 0.78662 0.47409 0.4755 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9225 9225 ERR202579 ERX177264 ERS128293 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570568 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#10 5151820 Illumina sequencing of library 5151820 constructed from sample accession ERS128293 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence TAGCTT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#10.bam bam 2048934000.0 13659560.0 SC RUN 7991 3#10 0:75 1:75 A:550192956;C:478684562;G:469641188;T:550228773;N:186521 75 75     550192956 478684562 469641188 550228773 186521 ERX177264 ERS128293 ERA176708 SC Wellcome Sanger Institute 2 0.93834 0.93923 0.03112 0.0308 0.7881 0.78845 0.4797 0.46933 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9226 9226 ERR202578 ERX177263 ERS128306 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570546 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#9 5151819 Illumina sequencing of library 5151819 constructed from sample accession ERS128306 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence GATCAG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#9.bam bam 1894517850.0 12630119.0 SC RUN 7991 3#9 0:75 1:75 A:508328665;C:443302760;G:435794803;T:506921757;N:169865 75 75     508328665 443302760 435794803 506921757 169865 ERX177263 ERS128306 ERA176708 SC Wellcome Sanger Institute 2 0.93797 0.93943 0.03231 0.03199 0.78776 0.78855 0.47732 0.47939 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9227 9227 ERR202577 ERX177262 ERS128273 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570565 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#8 5151818 Illumina sequencing of library 5151818 constructed from sample accession ERS128273 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#8.bam bam 2003464350.0 13356429.0 SC RUN 7991 3#8 0:75 1:75 A:535047038;C:470803438;G:462867310;T:534559336;N:187228 75 75     535047038 470803438 462867310 534559336 187228 ERX177262 ERS128273 ERA176708 SC Wellcome Sanger Institute 2 0.93966 0.94089 0.03417 0.03386 0.79125 0.79212 0.47657 0.47561 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9228 9228 ERR202576 ERX177261 ERS128284 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570567 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#7 5151817 Illumina sequencing of library 5151817 constructed from sample accession ERS128284 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence CAGATC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#7.bam bam 2099698800.0 13997992.0 SC RUN 7991 3#7 0:75 1:75 A:559205479;C:495006784;G:485740628;T:559553019;N:192890 75 75     559205479 495006784 485740628 559553019 192890 ERX177261 ERS128284 ERA176708 SC Wellcome Sanger Institute 2 0.94022 0.94119 0.02984 0.03004 0.79535 0.79582 0.47198 0.47234 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9229 9229 ERR202575 ERX177260 ERS128314 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570531 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#6 5151816 Illumina sequencing of library 5151816 constructed from sample accession ERS128314 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#6.bam bam 1852378650.0 12349191.0 SC RUN 7991 3#6 0:75 1:75 A:491641193;C:438849630;G:431874930;T:489848955;N:163942 75 75     491641193 438849630 431874930 489848955 163942 ERX177260 ERS128314 ERA176708 SC Wellcome Sanger Institute 2 0.9396 0.94022 0.03687 0.03639 0.79391 0.79508 0.48233 0.47981 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9230 9230 ERR202574 ERX177259 ERS128270 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570571 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#5 5151815 Illumina sequencing of library 5151815 constructed from sample accession ERS128270 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence ACAGTG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#5.bam bam 1905950100.0 12706334.0 SC RUN 7991 3#5 0:75 1:75 A:508227014;C:448818729;G:440083593;T:508648793;N:171971 75 75     508227014 448818729 440083593 508648793 171971 ERX177259 ERS128270 ERA176708 SC Wellcome Sanger Institute 2 0.93904 0.93949 0.03053 0.0305 0.79476 0.79504 0.46881 0.4682 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9231 9231 ERR202573 ERX177258 ERS128290 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570529 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#4 5151814 Illumina sequencing of library 5151814 constructed from sample accession ERS128290 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#4.bam bam 2233452750.0 14889685.0 SC RUN 7991 3#4 0:75 1:75 A:600289692;C:523649730;G:514488562;T:594820273;N:204493 75 75     600289692 523649730 514488562 594820273 204493 ERX177258 ERS128290 ERA176708 SC Wellcome Sanger Institute 2 0.93331 0.93504 0.04286 0.04288 0.79764 0.79872 0.49282 0.49263 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9232 9232 ERR202572 ERX177257 ERS128281 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570538 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#3 5151813 Illumina sequencing of library 5151813 constructed from sample accession ERS128281 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence TTAGGC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#3.bam bam 1786382700.0 11909218.0 SC RUN 7991 3#3 0:75 1:75 A:474590988;C:423203792;G:415563852;T:472862277;N:161791 75 75     474590988 423203792 415563852 472862277 161791 ERX177257 ERS128281 ERA176708 SC Wellcome Sanger Institute 2 0.93801 0.93821 0.03678 0.03657 0.79993 0.80101 0.48387 0.48633 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9233 9233 ERR202571 ERX177256 ERS128267 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570539 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#2 5151812 Illumina sequencing of library 5151812 constructed from sample accession ERS128267 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#2.bam bam 1857679200.0 12384528.0 SC RUN 7991 3#2 0:75 1:75 A:492800575;C:440742141;G:434414864;T:489551849;N:169771 75 75     492800575 440742141 434414864 489551849 169771 ERX177256 ERS128267 ERA176708 SC Wellcome Sanger Institute 2 0.93898 0.93885 0.04454 0.04446 0.80231 0.80148 0.48952 0.48403 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9234 9234 ERR202570 ERX177255 ERS128323 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570532 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 3#1 5151811 Illumina sequencing of library 5151811 constructed from sample accession ERS128323 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 3. This submission includes reads tagged with the sequence ATCACG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_3#1.bam bam 1646603250.0 10977355.0 SC RUN 7991 3#1 0:75 1:75 A:431613267;C:396410887;G:390228076;T:428197632;N:153388 75 75     431613267 396410887 390228076 428197632 153388 ERX177255 ERS128323 ERA176708 SC Wellcome Sanger Institute 2 0.93756 0.93836 0.05979 0.05917 0.8085 0.80793 0.49892 0.50068 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9235 9235 ERR202569 ERX177254 ERS128279 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570560 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#14 5151824 Illumina sequencing of library 5151824 constructed from sample accession ERS128279 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence AGTTCC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#14.bam bam 1965473100.0 13103154.0 SC RUN 7991 2#14 0:75 1:75 A:486500184;C:502825290;G:493112266;T:482886565;N:148795 75 75     486500184 502825290 493112266 482886565 148795 ERX177254 ERS128279 ERA176708 SC Wellcome Sanger Institute 2 0.94986 0.94913 0.11956 0.11903 0.79385 0.79486 0.56081 0.55883 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9236 9236 ERR202568 ERX177253 ERS128320 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570554 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#13 5151823 Illumina sequencing of library 5151823 constructed from sample accession ERS128320 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence AGTCAA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#13.bam bam 1975865550.0 13172437.0 SC RUN 7991 2#13 0:75 1:75 A:530360961;C:462060995;G:453537500;T:529752880;N:153214 75 75     530360961 462060995 453537500 529752880 153214 ERX177253 ERS128320 ERA176708 SC Wellcome Sanger Institute 2 0.93833 0.93806 0.03155 0.03213 0.78094 0.78159 0.47864 0.47791 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9237 9237 ERR202567 ERX177252 ERS128287 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570547 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#12 5151822 Illumina sequencing of library 5151822 constructed from sample accession ERS128287 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence CTTGTA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#12.bam bam 2236551750.0 14910345.0 SC RUN 7991 2#12 0:75 1:75 A:601633191;C:521677746;G:509992291;T:603071872;N:176650 75 75     601633191 521677746 509992291 603071872 176650 ERX177252 ERS128287 ERA176708 SC Wellcome Sanger Institute 2 0.93418 0.93547 0.03329 0.03301 0.78419 0.78512 0.48025 0.47948 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9238 9238 ERR202566 ERX177251 ERS128276 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570530 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#11 5151821 Illumina sequencing of library 5151821 constructed from sample accession ERS128276 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence GGCTAC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#11.bam bam 1853757000.0 12358380.0 SC RUN 7991 2#11 0:75 1:75 A:493376206;C:437370296;G:428928412;T:493934752;N:147334 75 75     493376206 437370296 428928412 493934752 147334 ERX177251 ERS128276 ERA176708 SC Wellcome Sanger Institute 2 0.93851 0.94009 0.0289 0.02908 0.78687 0.78762 0.47812 0.48106 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9239 9239 ERR202565 ERX177250 ERS128293 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570568 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#10 5151820 Illumina sequencing of library 5151820 constructed from sample accession ERS128293 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence TAGCTT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#10.bam bam 2177067300.0 14513782.0 SC RUN 7991 2#10 0:75 1:75 A:585573930;C:507717903;G:498561550;T:585042969;N:170948 75 75     585573930 507717903 498561550 585042969 170948 ERX177250 ERS128293 ERA176708 SC Wellcome Sanger Institute 2 0.93809 0.93844 0.03062 0.03029 0.78756 0.78806 0.46915 0.4705 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9240 9240 ERR202564 ERX177249 ERS128306 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570546 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#9 5151819 Illumina sequencing of library 5151819 constructed from sample accession ERS128306 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence GATCAG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#9.bam bam 2026219050.0 13508127.0 SC RUN 7991 2#9 0:75 1:75 A:544582418;C:473263118;G:465622655;T:542588190;N:162669 75 75     544582418 473263118 465622655 542588190 162669 ERX177249 ERS128306 ERA176708 SC Wellcome Sanger Institute 2 0.93856 0.93943 0.03227 0.0321 0.78721 0.78792 0.47402 0.47483 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9241 9241 ERR202563 ERX177248 ERS128273 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570565 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#8 5151818 Illumina sequencing of library 5151818 constructed from sample accession ERS128273 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#8.bam bam 2121615750.0 14144105.0 SC RUN 7991 2#8 0:75 1:75 A:567564098;C:497718795;G:489766936;T:566404626;N:161295 75 75     567564098 497718795 489766936 566404626 161295 ERX177248 ERS128273 ERA176708 SC Wellcome Sanger Institute 2 0.94031 0.94002 0.03568 0.03569 0.79153 0.79245 0.47888 0.48136 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9242 9242 ERR202562 ERX177247 ERS128284 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570567 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570567|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT7 sc 2012 04 19T16:32:30Z 1402698|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT7 sc 2012 04 19T16:32:30Z 1402698|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#7 5151817 Illumina sequencing of library 5151817 constructed from sample accession ERS128284 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence CAGATC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#7.bam bam 2215965300.0 14773102.0 SC RUN 7991 2#7 0:75 1:75 A:591170227;C:521550825;G:512152005;T:590918869;N:173374 75 75     591170227 521550825 512152005 590918869 173374 ERX177247 ERS128284 ERA176708 SC Wellcome Sanger Institute 2 0.93907 0.94112 0.02964 0.02987 0.79352 0.79421 0.47506 0.4729 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9243 9243 ERR202561 ERX177246 ERS128314 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570531 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570531|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT6 sc 2012 04 19T16:46:28Z 1402697|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT6 sc 2012 04 19T16:46:28Z 1402697|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#6 5151816 Illumina sequencing of library 5151816 constructed from sample accession ERS128314 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#6.bam bam 1948506750.0 12990045.0 SC RUN 7991 2#6 0:75 1:75 A:517926893;C:460908190;G:453947579;T:515573641;N:150447 75 75     517926893 460908190 453947579 515573641 150447 ERX177246 ERS128314 ERA176708 SC Wellcome Sanger Institute 2 0.93918 0.93934 0.03678 0.03652 0.79444 0.79511 0.47768 0.47922 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9244 9244 ERR202560 ERX177245 ERS128270 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570571 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570571|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT5 sc 2012 04 19T16:26:15Z 1402696|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT5 sc 2012 04 19T16:26:15Z 1402696|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#5 5151815 Illumina sequencing of library 5151815 constructed from sample accession ERS128270 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence ACAGTG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#5.bam bam 2024809950.0 13498733.0 SC RUN 7991 2#5 0:75 1:75 A:540829764;C:475955080;G:467032750;T:540836722;N:155634 75 75     540829764 475955080 467032750 540836722 155634 ERX177245 ERS128270 ERA176708 SC Wellcome Sanger Institute 2 0.93817 0.93991 0.03155 0.03163 0.79801 0.79784 0.47543 0.46986 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9245 9245 ERR202559 ERX177244 ERS128290 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570529 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570529|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT4 sc 2012 04 19T16:36:10Z 1402695|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT4 sc 2012 04 19T16:36:10Z 1402695|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#4 5151814 Illumina sequencing of library 5151814 constructed from sample accession ERS128290 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#4.bam bam 2366900700.0 15779338.0 SC RUN 7991 2#4 0:75 1:75 A:637085998;C:554141928;G:544686621;T:630801315;N:184838 75 75     637085998 554141928 544686621 630801315 184838 ERX177244 ERS128290 ERA176708 SC Wellcome Sanger Institute 2 0.93302 0.93387 0.04361 0.04388 0.79687 0.79776 0.48777 0.48871 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9246 9246 ERR202558 ERX177243 ERS128281 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570538 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570538|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT3 sc 2012 04 19T16:32:26Z 1402694|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT3 sc 2012 04 19T16:32:26Z 1402694|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#3 5151813 Illumina sequencing of library 5151813 constructed from sample accession ERS128281 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence TTAGGC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#3.bam bam 1875931350.0 12506209.0 SC RUN 7991 2#3 0:75 1:75 A:499111540;C:443699648;G:436097536;T:496882022;N:140604 75 75     499111540 443699648 436097536 496882022 140604 ERX177243 ERS128281 ERA176708 SC Wellcome Sanger Institute 2 0.93696 0.93866 0.03685 0.03693 0.80113 0.80188 0.47663 0.4733 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9247 9247 ERR202557 ERX177242 ERS128267 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570539 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570539|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT2 sc 2012 04 19T16:26:10Z 1402693|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT2 sc 2012 04 19T16:26:10Z 1402693|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#2 5151812 Illumina sequencing of library 5151812 constructed from sample accession ERS128267 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#2.bam bam 1973397150.0 13155981.0 SC RUN 7991 2#2 0:75 1:75 A:524195659;C:467576567;G:461265273;T:520206087;N:153564 75 75     524195659 467576567 461265273 520206087 153564 ERX177242 ERS128267 ERA176708 SC Wellcome Sanger Institute 2 0.93915 0.93858 0.04524 0.04551 0.80101 0.8017 0.48272 0.49051 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9248 9248 ERR202556 ERX177241 ERS128323 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570532 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570532|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT1 sc 2012 04 19T16:56:21Z 1402692|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT1 sc 2012 04 19T16:56:21Z 1402692|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 2#1 5151811 Illumina sequencing of library 5151811 constructed from sample accession ERS128323 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 2. This submission includes reads tagged with the sequence ATCACG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_2#1.bam bam 1758848550.0 11725657.0 SC RUN 7991 2#1 0:75 1:75 A:461535576;C:423156918;G:416698923;T:457321316;N:135817 75 75     461535576 423156918 416698923 457321316 135817 ERX177241 ERS128323 ERA176708 SC Wellcome Sanger Institute 2 0.93834 0.93775 0.05982 0.05902 0.8074 0.80795 0.50959 0.51426 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9249 9249 ERR202555 ERX177240 ERS128279 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570560 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570560|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT14 sc 2012 04 19T16:26:28Z 1402705|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT14 sc 2012 04 19T16:26:28Z 1402705|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#14 5151824 Illumina sequencing of library 5151824 constructed from sample accession ERS128279 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence AGTTCC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#14.bam bam 1942069800.0 12947132.0 SC RUN 7991 1#14 0:75 1:75 A:480136147;C:497356614;G:487713499;T:476662027;N:201513 75 75     480136147 497356614 487713499 476662027 201513 ERX177240 ERS128279 ERA176708 SC Wellcome Sanger Institute 2 0.9501 0.95034 0.11971 0.11847 0.79302 0.79356 0.55788 0.56202 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9250 9250 ERR202554 ERX177239 ERS128320 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570554 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570554|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT13 sc 2012 04 19T16:52:10Z 1402704|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT13 sc 2012 04 19T16:52:10Z 1402704|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#13 5151823 Illumina sequencing of library 5151823 constructed from sample accession ERS128320 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence AGTCAA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#13.bam bam 1948055850.0 12987039.0 SC RUN 7991 1#13 0:75 1:75 A:522661506;C:455839435;G:447386910;T:521960598;N:207401 75 75     522661506 455839435 447386910 521960598 207401 ERX177239 ERS128320 ERA176708 SC Wellcome Sanger Institute 2 0.93802 0.94054 0.03166 0.03183 0.77997 0.78131 0.47437 0.47601 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9251 9251 ERR202553 ERX177238 ERS128287 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570547 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#12 5151822 Illumina sequencing of library 5151822 constructed from sample accession ERS128287 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence CTTGTA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#12.bam bam 2205560100.0 14703734.0 SC RUN 7991 1#12 0:75 1:75 A:592914196;C:514804425;G:503196825;T:594414796;N:229858 75 75     592914196 514804425 503196825 594414796 229858 ERX177238 ERS128287 ERA176708 SC Wellcome Sanger Institute 2 0.93385 0.93649 0.03267 0.03263 0.7839 0.7837 0.4747 0.47597 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9252 9252 ERR202552 ERX177237 ERS128276 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570530 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570530|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT11 sc 2012 04 19T16:26:24Z 1402702|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT11 sc 2012 04 19T16:26:24Z 1402702|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#11 5151821 Illumina sequencing of library 5151821 constructed from sample accession ERS128276 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence GGCTAC. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#11.bam bam 1824987750.0 12166585.0 SC RUN 7991 1#11 0:75 1:75 A:485416877;C:430833103;G:422476852;T:486059960;N:200958 75 75     485416877 430833103 422476852 486059960 200958 ERX177237 ERS128276 ERA176708 SC Wellcome Sanger Institute 2 0.93784 0.93896 0.02985 0.02985 0.78646 0.78766 0.47384 0.47295 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9253 9253 ERR202551 ERX177236 ERS128293 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570568 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570568|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT10 sc 2012 04 19T16:36:13Z 1402701|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT10 sc 2012 04 19T16:36:13Z 1402701|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#10 5151820 Illumina sequencing of library 5151820 constructed from sample accession ERS128293 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence TAGCTT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#10.bam bam 2145935550.0 14306237.0 SC RUN 7991 1#10 0:75 1:75 A:576875126;C:500761710;G:491689871;T:576379891;N:228952 75 75     576875126 500761710 491689871 576379891 228952 ERX177236 ERS128293 ERA176708 SC Wellcome Sanger Institute 2 0.93793 0.93901 0.03054 0.03063 0.7865 0.78685 0.47914 0.47682 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9254 9254 ERR202550 ERX177235 ERS128306 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570546 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:14Z|External Id:SAMEA1570546|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:14Z|INSDC status:public|Submitter Id:ccT9 sc 2012 04 19T16:42:59Z 1402700|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT9 sc 2012 04 19T16:42:59Z 1402700|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#9 5151819 Illumina sequencing of library 5151819 constructed from sample accession ERS128306 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence GATCAG. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#9.bam bam 1999944450.0 13332963.0 SC RUN 7991 1#9 0:75 1:75 A:537165535;C:467460412;G:459832104;T:535272889;N:213510 75 75     537165535 467460412 459832104 535272889 213510 ERX177235 ERS128306 ERA176708 SC Wellcome Sanger Institute 2 0.93704 0.94018 0.03276 0.0329 0.78914 0.78963 0.47486 0.47592 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures
9255 9255 ERR202549 ERX177234 ERS128273 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA1570565 SC ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570565|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT8 sc 2012 04 19T16:26:19Z 1402699|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT8 sc 2012 04 19T16:26:19Z 1402699|scientific name:Danio rerio|strain:T/LF                 1 SC EXP 7991 1#8 5151818 Illumina sequencing of library 5151818 constructed from sample accession ERS128273 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 7991_1#8.bam bam 2090616750.0 13937445.0 SC RUN 7991 1#8 0:75 1:75 A:558872416;C:490793754;G:482832561;T:557892989;N:225030 75 75     558872416 490793754 482832561 557892989 225030 ERX177234 ERS128273 ERA176708 SC Wellcome Sanger Institute 2 0.93851 0.94022 0.03506 0.03513 0.79084 0.7922 0.47947 0.48166 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2012-11-28 Undetermined Embryo Whole Organism All anatomical structures

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;