metadata: run_metadata: 144 rows where devstage_curation = "Pharyngula" and experiment.library

144 rows where devstage_curation = "Pharyngula" and experiment.library_selection = "Oligo-dT"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
11753	11753	ERR11758614	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S25_L001_R1_001.fastq.gz FliTp124hpf_S25_L001_R2_001.fastq.gz	fastq fastq	226833768.0	1800268.0	E MTAB 13196:FliTp124hpf S25 L001	0:28 1:98	A:65319978;C:50920193;G:49999849;T:60474280;N:119468	28	98	65319978	50920193	49999849	60474280	119468	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00122	0.88236	0.00056	0.09684	0.9978	0.89309	0.424	0.44186	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11754	11754	ERR11758619	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S27_L001_R1_001.fastq.gz FliTp124hpf_S27_L001_R2_001.fastq.gz	fastq fastq	261098334.0	2072209.0	E MTAB 13196:FliTp124hpf S27 L001	0:28 1:98	A:76098436;C:58031830;G:57099955;T:69729759;N:138354	28	98	76098436	58031830	57099955	69729759	138354	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00109	0.87641	0.00062	0.0976	0.99837	0.90065	0.45555	0.48712	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11755	11755	ERR11758589	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S16_L005_R1_001.fastq.gz FliTp124hpf_S16_L005_R2_001.fastq.gz	fastq fastq	1168367130.0	9272755.0	E MTAB 13196:FliTp124hpf S16 L005	0:28 1:98	A:323651598;C:269884286;G:268030176;T:306695030;N:106040	28	98	323651598	269884286	268030176	306695030	106040	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00491	0.90853	0.00131	0.07851	0.99019	0.84331	0.41536	0.48076	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11756	11756	ERR11758638	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S22_L001_R1_001.fastq.gz FliTp124hpf_S22_L001_R2_001.fastq.gz	fastq fastq	864786636.0	6863386.0	E MTAB 13196:FliTp124hpf S22 L001	0:28 1:98	A:241767760;C:198370882;G:198049093;T:226508751;N:90150	28	98	241767760	198370882	198049093	226508751	90150	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00375	0.89002	0.00114	0.0769	0.99237	0.84563	0.41796	0.48995	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11757	11757	ERR11758599	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S15_L005_R1_001.fastq.gz FliTp124hpf_S15_L005_R2_001.fastq.gz	fastq fastq	1795799502.0	14252377.0	E MTAB 13196:FliTp124hpf S15 L005	0:28 1:98	A:500590460;C:413239086;G:410401125;T:471402890;N:165941	28	98	500590460	413239086	410401125	471402890	165941	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00492	0.91242	0.0012	0.08044	0.99007	0.84668	0.42778	0.49291	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11758	11758	ERR11758601	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S26_L001_R1_001.fastq.gz FliTp124hpf_S26_L001_R2_001.fastq.gz	fastq fastq	266141358.0	2112233.0	E MTAB 13196:FliTp124hpf S26 L001	0:28 1:98	A:76996100;C:59592346;G:58963461;T:70457732;N:131719	28	98	76996100	59592346	58963461	70457732	131719	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00106	0.88422	0.00046	0.09358	0.99782	0.89449	0.47826	0.48948	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11759	11759	ERR11758630	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S14_L005_R1_001.fastq.gz FliTp124hpf_S14_L005_R2_001.fastq.gz	fastq fastq	1812847428.0	14387678.0	E MTAB 13196:FliTp124hpf S14 L005	0:28 1:98	A:502956890;C:417865079;G:416595454;T:475266679;N:163326	28	98	502956890	417865079	416595454	475266679	163326	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00483	0.91317	0.00123	0.07918	0.99036	0.84143	0.40704	0.4819	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11760	11760	ERR11758603	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S13_L005_R1_001.fastq.gz FliTp124hpf_S13_L005_R2_001.fastq.gz	fastq fastq	1544281830.0	12256205.0	E MTAB 13196:FliTp124hpf S13 L005	0:28 1:98	A:428008915;C:356252081;G:354333187;T:405545992;N:141655	28	98	428008915	356252081	354333187	405545992	141655	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00507	0.91025	0.00138	0.07858	0.98987	0.84295	0.41793	0.4891	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11761	11761	ERR11758613	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S21_L001_R1_001.fastq.gz FliTp124hpf_S21_L001_R2_001.fastq.gz	fastq fastq	761441436.0	6043186.0	E MTAB 13196:FliTp124hpf S21 L001	0:28 1:98	A:212876877;C:174700212;G:174244892;T:199537401;N:82054	28	98	212876877	174700212	174244892	199537401	82054	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00334	0.88899	0.00106	0.07762	0.99322	0.84476	0.42792	0.48783	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11762	11762	ERR11758645	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S23_L001_R1_001.fastq.gz FliTp124hpf_S23_L001_R2_001.fastq.gz	fastq fastq	873938772.0	6936022.0	E MTAB 13196:FliTp124hpf S23 L001	0:28 1:98	A:245075115;C:199879929;G:199312177;T:229576663;N:94888	28	98	245075115	199879929	199312177	229576663	94888	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00361	0.88671	0.00104	0.07855	0.99255	0.84723	0.41141	0.4885	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11763	11763	ERR11758598	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S28_L001_R1_001.fastq.gz FliTp124hpf_S28_L001_R2_001.fastq.gz	fastq fastq	164465532.0	1305282.0	E MTAB 13196:FliTp124hpf S28 L001	0:28 1:98	A:47319366;C:37063279;G:36394680;T:43602586;N:85621	28	98	47319366	37063279	36394680	43602586	85621	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00117	0.88222	0.00058	0.09358	0.99799	0.89217	0.54867	0.48545	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11764	11764	ERR11758593	ERX11157721	ERS16172939	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	fli1tp1 24hpf	SAMEA114192246	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192246\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:fli1tp1 24hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:fli1:DsRed tp1:eGFP\|geographic location country and/or sea:not collected\|immunophenotype:fli1:DsRed+ tp1:eGFP+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:fli1tp1 24hpf\|scientific name:Danio rerio\|strain:fli1:DsRed tp1:eGFP	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:fli1tp1 24hpf p	fli1tp1 24hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	FliTp124hpf_S24_L001_R1_001.fastq.gz FliTp124hpf_S24_L001_R2_001.fastq.gz	fastq fastq	558365976.0	4431476.0	E MTAB 13196:FliTp124hpf S24 L001	0:28 1:98	A:156054630;C:128109738;G:127885708;T:146256146;N:59754	28	98	156054630	128109738	127885708	146256146	59754	ERX11157721	ERS16172939	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00345	0.8879	0.00104	0.07718	0.99322	0.84364	0.38266	0.49193	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11765	11765	ERR11758635	ERX11157720	ERS16172938	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	etv2 wt 22hpf	SAMEA114192245	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192245\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:etv2 wt 22hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:etv2:Kaede\|geographic location country and/or sea:not collected\|immunophenotype:etv2:Kaede+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:etv2 wt 22hpf\|scientific name:Danio rerio\|strain:etv2:Kaede	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:etv2 wt 22hpf p	etv2 wt 22hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Etv2Kaede_WT_S6_L001_R1_001.fastq.gz Etv2Kaede_WT_S6_L001_R2_001.fastq.gz	fastq fastq	1144014102.0	9079477.0	E MTAB 13196:Etv2Kaede WT S6 L001	0:28 1:98	A:316366230;C:260322813;G:259447166;T:307680623;N:197270	28	98	316366230	260322813	259447166	307680623	197270	ERX11157720	ERS16172938	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00336	0.89267	0.00137	0.13734	0.99545	0.81957	0.3734	0.53458	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11766	11766	ERR11758622	ERX11157720	ERS16172938	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	etv2 wt 22hpf	SAMEA114192245	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192245\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:etv2 wt 22hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:etv2:Kaede\|geographic location country and/or sea:not collected\|immunophenotype:etv2:Kaede+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:etv2 wt 22hpf\|scientific name:Danio rerio\|strain:etv2:Kaede	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:etv2 wt 22hpf p	etv2 wt 22hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Etv2Kaede_WT_S8_L001_R2_001.fastq.gz Etv2Kaede_WT_S8_L001_R1_001.fastq.gz	fastq fastq	919270926.0	7295801.0	E MTAB 13196:Etv2Kaede WT S8 L001	0:28 1:98	A:259787542;C:207541571;G:206711907;T:245072713;N:157193	28	98	259787542	207541571	206711907	245072713	157193	ERX11157720	ERS16172938	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00358	0.88757	0.00137	0.15368	0.99551	0.83378	0.36405	0.53733	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11767	11767	ERR11758644	ERX11157720	ERS16172938	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	etv2 wt 22hpf	SAMEA114192245	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192245\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:etv2 wt 22hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:etv2:Kaede\|geographic location country and/or sea:not collected\|immunophenotype:etv2:Kaede+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:etv2 wt 22hpf\|scientific name:Danio rerio\|strain:etv2:Kaede	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:etv2 wt 22hpf p	etv2 wt 22hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Etv2Kaede_WT_S5_L001_R2_001.fastq.gz Etv2Kaede_WT_S5_L001_R1_001.fastq.gz	fastq fastq	877658166.0	6965541.0	E MTAB 13196:Etv2Kaede WT S5 L001	0:28 1:98	A:243057461;C:199464116;G:198654377;T:236322700;N:159512	28	98	243057461	199464116	198654377	236322700	159512	ERX11157720	ERS16172938	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00328	0.88916	0.00127	0.13782	0.99559	0.81925	0.38227	0.53623	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
11768	11768	ERR11758628	ERX11157720	ERS16172938	ERP149744	PRJEB64563	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E-MTAB-13196	Transcriptome Analysis	Development of the dorsal aorta is a key step in the establishment of the adult blood forming system since hematopoietic stem and progenitor cells HSPCs arise from ventral aortic endothelium in all vertebrate animals studied. Work in zebrafish has demonstrated that arterial and venous endothelial precursors arise from distinct subsets of lateral plate mesoderm. Here we profile the transcriptome of the earliest detectable endothelial cells ECs during zebrafish embryogenesis to demonstrate that tissue specific EC programs initiate much earlier than previously appreciated by the end of gastrulation. Classic studies in the chick embryo showed that paraxial mesoderm generates a subset of somite derived endothelial cells SDECs that incorporate into the dorsal aorta to replace HSPCs as they exit the aorta and enter circulation. We describe a conserved program in the zebrafish where a rare population of endothelial precursors delaminates from the dermomyotome to incorporate exclusively into the developing dorsal aorta. Whereas SDECs lack hematopoietic potential they act as a local niche to support the emergence of HSPCs from neighboring hemogenic endothelium. Thus at least three subsets of ECs contribute to the developing dorsal aorta: vascular ECs hemogenic ECs and SDECs. Taken together our findings indicate that the distinct spatial origins of endothelial precursors dictate different cellular potentials within the developing dorsal aorta.	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Protocols: Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3ʹ GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	etv2 wt 22hpf	SAMEA114192245	Institute of Molecular Genetics of the Czech Academy of Sciences	ENA FIRST PUBLIC:2023 08 01T00:17:16Z\|ENA LAST UPDATE:2023 08 01T00:17:16Z\|External Id:SAMEA114192245\|INSDC center alias:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC center name:Institute of Molecular Genetics of the Czech Academy of Sciences\|INSDC first public:2023 08 01T00:17:16Z\|INSDC last update:2023 08 01T00:17:16Z\|INSDC status:public\|Submitter Id:E MTAB 13196:etv2 wt 22hpf\|age:24\|broker name:ArrayExpress\|cell type:endothelial cell\|collection date:not collected\|common name:zebrafish\|developmental stage:24 hpf\|genotype:etv2:Kaede\|geographic location country and/or sea:not collected\|immunophenotype:etv2:Kaede+\|isolate:not applicable\|organism part:embryo\|sample name:E MTAB 13196:etv2 wt 22hpf\|scientific name:Danio rerio\|strain:etv2:Kaede	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	E MTAB 13196:etv2 wt 22hpf p	etv2 wt 22hpf p	Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	Dechorionated embryos were collected at defined stages dissociated by pipetting centrifugation at 300g for 5 minutes washed once with PBS and sorted by FACS. Total cell concentration and viability were determined using a TC20 Automated Cell Counter Bio Rad. Samples were then re suspended in 1x PBS with 0.05% BSA at 800 3000 cells per ml. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation. Samples were loaded on the 10x Chromium system with a target of 4 000 cells. Chromium Single Cell 3สน GEM Library & Gel Bead Kit v2 or v3 was used for library preparation.	RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina HiSeq 2500	ERP149744	Illumina HiSeq 2500 paired end sequencing; Single cell RNA seq 10x Chromium of FACS sorted drl:H2B Dendra2 etv2:Kaede fli1:DsRed and tp1:eGFP transgenic zebrafish embryos	ENA FIRST PUBLIC:2023 08 01\|ENA LAST UPDATE:2023 08 01	Etv2Kaede_WT_S7_L001_R1_001.fastq.gz Etv2Kaede_WT_S7_L001_R2_001.fastq.gz	fastq fastq	930443598.0	7384473.0	E MTAB 13196:Etv2Kaede WT S7 L001	0:28 1:98	A:258539610;C:211017108;G:209074684;T:251641766;N:170430	28	98	258539610	211017108	209074684	251641766	170430	ERX11157720	ERS16172938	ERA25628220	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	Institute of Molecular Genetics of the Czech Academy of Sciences\|European Nucleotide Archive	2	0.00355	0.88938	0.00148	0.14297	0.99569	0.83358	0.35626	0.53314	28	98	T	B	sc-like readlen	illumina	hiseq_era	unknown	poly_a	unknown	sc	single_cell_droplet	10x	Czech Republic	2023-08-01	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
29721	29721	SRR27485666	SRX23156883	SRS20107304	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other					24h R2		strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|replicate:2\|BioSampleModel:Model organism or animal	mRNA seq of zebrafish: embryo 24 hpf rep4	EV06007	EV06007	RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 500	SRP482074			EV06007.R1.fastq.gz	fastq	758984715.0	10062029.0	EV06007.R1.fastq.gz	0:75.43	A:221215464;C:148997667;G:167225079;T:221520231;N:26274	75		221215464	148997667	167225079	221520231	26274	SRX23156883	SRS20107304	SRA1783314	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.90914		0.18457		0.77782		0.38818		75		B		usable mapping rate	illumina	nextseq	3prime	poly_a	lexogen	bulk	unknown	unknown	Austria	2024-01-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
29726	29726	SRR27485671	SRX23156878	SRS20107299	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other					24h R3		strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|replicate:3\|BioSampleModel:Model organism or animal	mRNA seq of zebrafish: embryo 24 hpf rep4	EV06014	EV06014	RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 500	SRP482074			EV06014.R1.fastq.gz	fastq	708984998.0	9425445.0	EV06014.R1.fastq.gz	0:75.22	A:219626080;C:141270902;G:161722995;T:186246245;N:118776	75		219626080	141270902	161722995	186246245	118776	SRX23156878	SRS20107299	SRA1783314	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.84881		0.17975		0.79693		0.44149		76		B		usable mapping rate	illumina	nextseq	3prime	poly_a	lexogen	bulk	unknown	unknown	Austria	2024-01-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
29732	29732	SRR27477292	SRX23148655	SRS20099371	SRP482074	PRJNA1061456	tRAM seq: tRNA abundance and modification analysis during zebrafish embryo development	PRJNA1061456	Other					24h R4		strain:TLAB fish\|isolate:NA\|breed:cross of zebrafish AB and the natural variant TL Tupfel Longfin\|cultivar:NA\|ecotype:NA\|dev stage:24 hpf\|collection date:2022\|geo loc name:Austria\|sex:mixed\|tissue:whole embryo\|replicate:4\|BioSampleModel:Model organism or animal	mRNA seq of zebrafish: embryo 24 hpf rep4	EV09007	EV09007	RNA was extracted with Trizol and processed with QuantSeq three prime mRNA Seq Library Prep Kit FWD for Illumina Lexogen. 500 ng total RNA per sample. Single indexed QuantSeq libraries were QC checked on a Bioanalyzer 2100 Agilent using a High Sensitivity DNA Kit for correct insert size and quantified using Qubit dsDNA HS Assay Invitrogen. Pooled libraries were sequenced on a NextSeq500 instrument Illumina in 1x75bp single end sequencing mode		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	NextSeq 500	SRP482074			EV09007.R1.fastq.gz	fastq	693872355.0	9217545.0	EV09007.R1.fastq.gz	0:75.28	A:207207066;C:136288214;G:150585299;T:199742228;N:49548	75		207207066	136288214	150585299	199742228	49548	SRX23148655	SRS20099371	SRA1782413	Medical University of Vienna\|Cell and Developmental Biology	Medical University of Vienna	1	0.89376		0.11471		0.79192		0.60125		76		B		usable mapping rate	illumina	nextseq	3prime	poly_a	lexogen	bulk	unknown	unknown	Austria	2024-01-10	Pharyngula	Embryo	Whole Organism	All anatomical structures
34345	34345	SRR31677713	SRX27040110	SRS23503219	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				mut3 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:mut3 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf mut3	sample6	sample6	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf mut3_1.fq.gz 30hpf mut3_2.fq.gz	fastq fastq	6943287600.0	23144292.0	30hpf mut3 1.fq.gz	0:150 1:150	A:1880946993;C:1612371130;G:1588213310;T:1861395696;N:360471	150	150	1880946993	1612371130	1588213310	1861395696	360471	SRX27040110	SRS23503219	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
34346	34346	SRR31677714	SRX27040109	SRS23503218	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				mut2 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:mut2 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf mut2	sample5	sample5	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf mut2_1.fq.gz 30hpf mut2_2.fq.gz	fastq fastq	7235344200.0	24117814.0	30hpf mut2 1.fq.gz	0:150 1:150	A:2039516350;C:1610256460;G:1577775149;T:2007409757;N:386484	150	150	2039516350	1610256460	1577775149	2007409757	386484	SRX27040109	SRS23503218	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
34347	34347	SRR31677715	SRX27040108	SRS23503217	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				mut1 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:mut1 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf mut1	sample4	sample4	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf mut1_1.fq.gz 30hpf mut1_2.fq.gz	fastq fastq	6625908300.0	22086361.0	30hpf mut1 1.fq.gz	0:150 1:150	A:1815071826;C:1519954980;G:1499263331;T:1791264958;N:353205	150	150	1815071826	1519954980	1499263331	1791264958	353205	SRX27040108	SRS23503217	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
34348	34348	SRR31677716	SRX27040107	SRS23503216	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				sib3 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:sib3 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf sib3	sample3	sample3	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf sib3_1.fq.gz 30hpf sib3_2.fq.gz	fastq fastq	6774228000.0	22580760.0	30hpf sib3 1.fq.gz	0:150 1:150	A:1887196046;C:1525955378;G:1501944328;T:1858775815;N:356433	150	150	1887196046	1525955378	1501944328	1858775815	356433	SRX27040107	SRS23503216	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
34351	34351	SRR31677719	SRX27040104	SRS23503213	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				sib2 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:sib2 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf sib2	sample2	sample2	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf sib2_1.fq.gz 30hpf sib2_2.fq.gz	fastq fastq	6508345200.0	21694484.0	30hpf sib2 1.fq.gz	0:150 1:150	A:1766203721;C:1507956441;G:1489359529;T:1744483985;N:341524	150	150	1766203721	1507956441	1489359529	1744483985	341524	SRX27040104	SRS23503213	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
34352	34352	SRR31677720	SRX27040103	SRS23503212	SRP550762	PRJNA1196411	Danio rerio Raw sequence reads	PRJNA1196411	Other	RNA seq of gata6 mutants and siblings				sib1 30hpf		isolate:not collected\|dev stage:30hpf\|collection date:2024 02 20\|geo loc name:China: chongqing\|sex:not applicable\|tissue:sib1 30hpf whole embryo\|BioSampleModel:Model organism or animal	30hpf sib1	sample1	sample1	30hpf whole embryo		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq X Plus	SRP550762			30hpf sib1_1.fq.gz 30hpf sib1_2.fq.gz	fastq fastq	6460412400.0	21534708.0	30hpf sib1 1.fq.gz	0:150 1:150	A:1743002257;C:1503750658;G:1488945374;T:1724378165;N:335946	150	150	1743002257	1503750658	1488945374	1724378165	335946	SRX27040103	SRS23503212	SRA2031942	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences\|Research Center of Stem Cells and Ageing	Chongqing Institute of Green and Intelligent Technology , Chinese Academy of Sciences												B	B	biological fallback assumption	illumina	novaseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2024-12-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35850	35850	SRR33076649	SRX28340997	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex1 only for fig4 and figsupp10	RNP&PCPSdark1	RNP&PCPSdark1	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSdark1_R1.fastq.gz RNP&PCPSdark1_R2.fastq.gz	fastq fastq	8848973400.0	29496578.0	RNP&PCPSdark1 R1.fastq.gz	0:150 1:150	A:2354113378;C:2077073461;G:2087235148;T:2329940088;N:611325	150	150	2354113378	2077073461	2087235148	2329940088	611325	SRX28340997	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35851	35851	SRR33076650	SRX28340996	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax only for fig4 and figsupp10	RNP3	RNP3	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP3_R1.fastq.gz RNP3_R2.fastq.gz	fastq fastq	7794868800.0	25982896.0	RNP3 R1.fastq.gz	0:150 1:150	A:2087730416;C:1817769012;G:1824246947;T:2064559805;N:562620	150	150	2087730416	1817769012	1824246947	2064559805	562620	SRX28340996	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35852	35852	SRR33076651	SRX28340995	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax only for fig4 and figsupp10	RNP2	RNP2	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP2_R1.fastq.gz RNP2_R2.fastq.gz	fastq fastq	9825604500.0	32752015.0	RNP2 R1.fastq.gz	0:150 1:150	A:2635309510;C:2288423751;G:2294106654;T:2607073110;N:691475	150	150	2635309510	2288423751	2294106654	2607073110	691475	SRX28340995	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35853	35853	SRR33076652	SRX28340994	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax only for fig4 and figsupp10	RNP1	RNP1	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP1_R1.fastq.gz RNP1_R2.fastq.gz	fastq fastq	7515618000.0	25052060.0	RNP1 R1.fastq.gz	0:150 1:150	A:2010030462;C:1755973960;G:1760594465;T:1988493578;N:525535	150	150	2010030462	1755973960	1760594465	1988493578	525535	SRX28340994	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35854	35854	SRR33076653	SRX28340993	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABE8e only for fig4 and figsupp10	UV60s3	UV60s3	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			UV60s3_R1.fastq.gz UV60s3_R2.fastq.gz	fastq fastq	7232854500.0	24109515.0	UV60s3 R1.fastq.gz	0:150 1:150	A:1926683661;C:1696217715;G:1707652822;T:1902280305;N:19997	150	150	1926683661	1696217715	1707652822	1902280305	19997	SRX28340993	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35855	35855	SRR33076654	SRX28340992	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABE8e only for fig4 and figsupp10	UV60s2	UV60s2	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			UV60s2_R1.fastq.gz UV60s2_R2.fastq.gz	fastq fastq	7204532400.0	24015108.0	UV60s2 R1.fastq.gz	0:150 1:150	A:1892484387;C:1715527707;G:1726571310;T:1869928245;N:20751	150	150	1892484387	1715527707	1726571310	1869928245	20751	SRX28340992	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35856	35856	SRR33076655	SRX28340991	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABE8e only for fig4 and figsupp10	UV60s1	UV60s1	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			UV60s1_R1.fastq.gz UV60s1_R2.fastq.gz	fastq fastq	6373299600.0	21244332.0	UV60s1 R1.fastq.gz	0:150 1:150	A:1706355288;C:1485803278;G:1494740583;T:1686382476;N:17975	150	150	1706355288	1485803278	1494740583	1686382476	17975	SRX28340991	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35857	35857	SRR33076656	SRX28340990	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of un injected control for fig4 and figsupp10	Dark3	Dark3	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			Dark3_R1.fastq.gz Dark3_R2.fastq.gz	fastq fastq	7177651200.0	23925504.0	Dark3 R1.fastq.gz	0:150 1:150	A:1934487156;C:1661154151;G:1670367458;T:1911625892;N:16543	150	150	1934487156	1661154151	1670367458	1911625892	16543	SRX28340990	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35858	35858	SRR33076657	SRX28340989	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex2 only for fig4 and figsupp10	RNP&PCPSUV3	RNP&PCPSUV3	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSUV3_R1.fastq.gz RNP&PCPSUV3_R2.fastq.gz	fastq fastq	9183109200.0	30610364.0	RNP&PCPSUV3 R1.fastq.gz	0:150 1:150	A:2427935909;C:2170838695;G:2180476802;T:2403191776;N:666018	150	150	2427935909	2170838695	2180476802	2403191776	666018	SRX28340989	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35859	35859	SRR33076658	SRX28340988	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex2 only for fig4 and figsupp10	RNP&PCPSUV2	RNP&PCPSUV2	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSUV2_R1.fastq.gz RNP&PCPSUV2_R2.fastq.gz	fastq fastq	8256027900.0	27520093.0	RNP&PCPSUV2 R1.fastq.gz	0:150 1:150	A:2206058533;C:1930339773;G:1937127996;T:2181906664;N:594934	150	150	2206058533	1930339773	1937127996	2181906664	594934	SRX28340988	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35860	35860	SRR33076659	SRX28340987	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex2 only for fig4 and figsupp10	RNP&PCPSUV1	RNP&PCPSUV1	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSUV1_R1.fastq.gz RNP&PCPSUV1_R2.fastq.gz	fastq fastq	9632672100.0	32108907.0	RNP&PCPSUV1 R1.fastq.gz	0:150 1:150	A:2576906321;C:2249405382;G:2259699546;T:2545985362;N:675489	150	150	2576906321	2249405382	2259699546	2545985362	675489	SRX28340987	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35861	35861	SRR33076660	SRX28340986	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex1 only for fig4 and figsupp10	RNP&PCPSdark3	RNP&PCPSdark3	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSdark3_R1.fastq.gz RNP&PCPSdark3_R2.fastq.gz	fastq fastq	8660039700.0	28866799.0	RNP&PCPSdark3 R1.fastq.gz	0:150 1:150	A:2299279682;C:2038230549;G:2048904251;T:2273007920;N:617298	150	150	2299279682	2038230549	2048904251	2273007920	617298	SRX28340986	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35862	35862	SRR33076661	SRX28340985	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of injected ABEUmax ex1 only for fig4 and figsupp10	RNP&PCPSdark2	RNP&PCPSdark2	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			RNP&PCPSdark2_R1.fastq.gz RNP&PCPSdark2_R2.fastq.gz	fastq fastq	7700900100.0	25669667.0	RNP&PCPSdark2 R1.fastq.gz	0:150 1:150	A:2032573331;C:1824438093;G:1835289521;T:2008057350;N:541805	150	150	2032573331	1824438093	1835289521	2008057350	541805	SRX28340985	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35863	35863	SRR33076662	SRX28340984	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of un injected control for fig4 and figsupp10	Dark2	Dark2	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			Dark2_R1.fastq.gz Dark2_R2.fastq.gz	fastq fastq	6655275600.0	22184252.0	Dark2 R1.fastq.gz	0:150 1:150	A:1780712124;C:1553476639;G:1562597740;T:1758469986;N:19111	150	150	1780712124	1553476639	1562597740	1758469986	19111	SRX28340984	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
35864	35864	SRR33076663	SRX28340983	SRS24670562	SRP577801	PRJNA1249431	DNACas	PRJNA1249431	Other	Optimization of UV irradiation and PC&PS oligos for gene editing in zebrafish.				DNACas		strain:TAB5\|isolate:not applicable\|breed:not applicable\|cultivar:not applicable\|ecotype:not applicable\|age:not applicable\|dev stage:24 hpf\|collection date:2025 03 12\|geo loc name:China\|sex:pooled male and female\|tissue:whole embryos\|BioSampleModel:Model organism or animal	RNA seq of un injected control for fig4 and figsupp10	Dark1	Dark1	adapter		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	ILLUMINA	HiSeq X Ten	SRP577801			Dark1_R1.fastq.gz Dark1_R2.fastq.gz	fastq fastq	6612663000.0	22042210.0	Dark1 R1.fastq.gz	0:150 1:150	A:1769599358;C:1542330464;G:1552982402;T:1747730351;N:20425	150	150	1769599358	1542330464	1552982402	1747730351	20425	SRX28340983	SRS24670562	SRA2110225	South China Normal University\|School of Life Sciences	South China Normal University												B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	China	2025-04-11	Pharyngula	Embryo	Whole Organism	All anatomical structures
48734	48734	SRR7789588	SRX4644415	SRS3742485	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 312uM 24hpf 1 S7		strain:5D\|isolate:88\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 312uM 24hpf 1 S7	TDCIPP 312uM 24hpf 1 S7	TDCIPP 312uM 24hpf 1 S7	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-312uM-24hpf-1_S7_L001_R1_001.fastq.gz	fastq	184588031.0	2462646.0	TDCIPP 312uM 24hpf 1 S7 L001 R1 001.fastq.gz	0:74.96 1:0	A:59836053;C:33139428;G:43400445;T:48078483;N:133622	74	0	59836053	33139428	43400445	48078483	133622	SRX4644415	SRS3742485	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.79726		0.1642		0.7933		0.5999		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48735	48735	SRR7789589	SRX4644414	SRS3742484	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 156uM 24hpf 3 S9		strain:5D\|isolate:87\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 156uM 24hpf 3 S9	TDCIPP 156uM 24hpf 3 S9	TDCIPP 156uM 24hpf 3 S9	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-156uM-24hpf-3_S9_L001_R1_001.fastq.gz	fastq	184876248.0	2453513.0	TDCIPP 156uM 24hpf 3 S9 L001 R1 001.fastq.gz	0:75.35 1:0	A:53410957;C:33148221;G:44687015;T:53588493;N:41562	75	0	53410957	33148221	44687015	53588493	41562	SRX4644414	SRS3742484	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.87915		0.16605		0.77244		0.5773		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48736	48736	SRR7789590	SRX4644413	SRS3742483	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 156uM 24hpf 2 S8		strain:5D\|isolate:86\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 156uM 24hpf 2 S8	TDCIPP 156uM 24hpf 2 S8	TDCIPP 156uM 24hpf 2 S8	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-156uM-24hpf-2_S8_L001_R1_001.fastq.gz	fastq	140080067.0	1862101.0	TDCIPP 156uM 24hpf 2 S8 L001 R1 001.fastq.gz	0:75.23 1:0	A:42438761;C:24980897;G:33224272;T:39385900;N:50237	75	0	42438761	24980897	33224272	39385900	50237	SRX4644413	SRS3742483	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.85826		0.14847		0.77916		0.57916		73		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48737	48737	SRR7789591	SRX4644412	SRS3742482	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 156uM 24hpf 1 S12		strain:5D\|isolate:85\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 156uM 24hpf 1 S12	TDCIPP 156uM 24hpf 1 S12	TDCIPP 156uM 24hpf 1 S12	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-156uM-24hpf-1_S12_L001_R1_001.fastq.gz	fastq	218911092.0	2910723.0	TDCIPP 156uM 24hpf 1 S12 L001 R1 001.fastq.gz	0:75.21 1:0	A:66938762;C:38751166;G:50479676;T:62654864;N:86624	75	0	66938762	38751166	50479676	62654864	86624	SRX4644412	SRS3742482	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.84868		0.15475		0.77715		0.57656		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48738	48738	SRR7789592	SRX4644411	SRS3742481	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DorsoM 24hpf 3 S6		strain:5D\|isolate:84\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DorsoM 24hpf 3 S6	DorsoM 24hpf 3 S6	DorsoM 24hpf 3 S6	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DorsoM-24hpf-3_S6_L001_R1_001.fastq.gz	fastq	226197307.0	3007869.0	DorsoM 24hpf 3 S6 L001 R1 001.fastq.gz	0:75.20 1:0	A:69014123;C:40615780;G:53395820;T:63087228;N:84356	75	0	69014123	40615780	53395820	63087228	84356	SRX4644411	SRS3742481	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.84411		0.16582		0.78409		0.58746		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48739	48739	SRR7789593	SRX4644410	SRS3742480	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DorsoM 24hpf 2 S4		strain:5D\|isolate:83\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DorsoM 24hpf 2 S4	DorsoM 24hpf 2 S4	DorsoM 24hpf 2 S4	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DorsoM-24hpf-2_S4_L001_R1_001.fastq.gz	fastq	200787104.0	2671998.0	DorsoM 24hpf 2 S4 L001 R1 001.fastq.gz	0:75.14 1:0	A:62684374;C:36326611;G:48099771;T:53588669;N:87679	75	0	62684374	36326611	48099771	53588669	87679	SRX4644410	SRS3742480	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.83445		0.17548		0.78975		0.59538		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48740	48740	SRR7789594	SRX4644409	SRS3742479	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DorsoM 24hpf 1 S5		strain:5D\|isolate:82\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DorsoM 24hpf 1 S5	DorsoM 24hpf 1 S5	DorsoM 24hpf 1 S5	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DorsoM-24hpf-1_S5_L001_R1_001.fastq.gz	fastq	206040580.0	2740232.0	DorsoM 24hpf 1 S5 L001 R1 001.fastq.gz	0:75.19 1:0	A:63205154;C:36811449;G:49166561;T:56767117;N:90299	75	0	63205154	36811449	49166561	56767117	90299	SRX4644409	SRS3742479	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.8485		0.16417		0.78447		0.591		74		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48741	48741	SRR7789595	SRX4644408	SRS3742478	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DMSO 24hpf 3 S1		strain:5D\|isolate:81\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 3 S1	DMSO 24hpf 3 S1	DMSO 24hpf 3 S1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DMSO-24hpf-3_S1_L001_R1_001.fastq.gz	fastq	200487551.0	2662001.0	DMSO 24hpf 3 S1 L001 R1 001.fastq.gz	0:75.31 1:0	A:58320856;C:36521443;G:49072076;T:56528109;N:45067	75	0	58320856	36521443	49072076	56528109	45067	SRX4644408	SRS3742478	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.87328		0.15746		0.78165		0.57581		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48750	48750	SRR7789604	SRX4644399	SRS3742469	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DMSO 24hpf 1 S3		strain:5D\|isolate:79\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 1 S3	DMSO 24hpf 1 S3	DMSO 24hpf 1 S3	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DMSO-24hpf-1_S3_L001_R1_001.fastq.gz	fastq	195559158.0	2597033.0	DMSO 24hpf 1 S3 L001 R1 001.fastq.gz	0:75.30 1:0	A:57417392;C:35134927;G:47296304;T:55662008;N:48527	75	0	57417392	35134927	47296304	55662008	48527	SRX4644399	SRS3742469	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.86713		0.17324		0.77926		0.57305		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48751	48751	SRR7789605	SRX4644398	SRS3742468	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				DMSO 24hpf 2 S2		strain:5D\|isolate:80\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 2 S2	DMSO 24hpf 2 S2	DMSO 24hpf 2 S2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			DMSO-24hpf-2_S2_L001_R1_001.fastq.gz	fastq	166572474.0	2212698.0	DMSO 24hpf 2 S2 L001 R1 001.fastq.gz	0:75.28 1:0	A:48640696;C:30601449;G:40273907;T:47002888;N:53534	75	0	48640696	30601449	40273907	47002888	53534	SRX4644398	SRS3742468	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.87345		0.17124		0.77942		0.56446		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48762	48762	SRR7789616	SRX4644387	SRS3742457	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 312uM 24hpf 3 S10		strain:5D\|isolate:90\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 312uM 24hpf 3 S10	TDCIPP 312uM 24hpf 3 S10	TDCIPP 312uM 24hpf 3 S10	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-312uM-24hpf-3_S10_L001_R1_001.fastq.gz	fastq	189680978.0	2521266.0	TDCIPP 312uM 24hpf 3 S10 L001 R1 001.fastq.gz	0:75.23 1:0	A:57371176;C:34308154;G:45128853;T:52806417;N:66378	75	0	57371176	34308154	45128853	52806417	66378	SRX4644387	SRS3742457	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.8537		0.15223		0.7875		0.60037		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
48763	48763	SRR7789617	SRX4644386	SRS3742456	SRP159670	PRJNA475635	Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis	PRJNA475635	Other	The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.				TDCIPP 312uM 24hpf 2 S11		strain:5D\|isolate:89\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TDCIPP 312uM 24hpf 2 S11	TDCIPP 312uM 24hpf 2 S11	TDCIPP 312uM 24hpf 2 S11	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP159670			TDCIPP-312uM-24hpf-2_S11_L001_R1_001.fastq.gz	fastq	187372726.0	2491862.0	TDCIPP 312uM 24hpf 2 S11 L001 R1 001.fastq.gz	0:75.19 1:0	A:56398578;C:34043199;G:44675648;T:52187191;N:68110	75	0	56398578	34043199	44675648	52187191	68110	SRX4644386	SRS3742456	SRA767209	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.8514		0.1782		0.79166		0.59381		73		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2018-09-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50887	50887	SRR8784481	SRX5574334	SRS4536892	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 1 2 S10		strain:5D\|isolate:2\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 1 2 S10	DPHP D 30 1 2 S10	DPHP D 30 1 2 S10	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-1-2_S10_L001_R1_001.fastq.gz	fastq	238461832.0	3201052.0	D 30 1 2 S10 L001 R1 001.fastq.gz	0:74.49 1:0	A:79390298;C:43261018;G:59486784;T:54551984;N:1771748	74	0	79390298	43261018	59486784	54551984	1771748	SRX5574334	SRS4536892	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.69702		0.19078		0.81546		0.53635		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50888	50888	SRR8784482	SRX5574333	SRS4536891	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 1 S12		strain:5D\|isolate:1\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 1 S12	DPHP D 30 1 S12	DPHP D 30 1 S12	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-1_S12_L001_R1_001.fastq.gz	fastq	127484541.0	1705353.0	D 30 1 S12 L001 R1 001.fastq.gz	0:74.76 1:0	A:41547496;C:23209432;G:33043143;T:28929047;N:755423	74	0	41547496	23209432	33043143	28929047	755423	SRX5574333	SRS4536891	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.70027		0.2065		0.81326		0.52147		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50889	50889	SRR8784483	SRX5574332	SRS4536890	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 2 2 S12		strain:5D\|isolate:4\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 2 2 S12	DPHP D 30 2 2 S12	DPHP D 30 2 2 S12	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-2-2_S12_L001_R1_001.fastq.gz	fastq	158402653.0	2124088.0	D 30 2 2 S12 L001 R1 001.fastq.gz	0:74.57 1:0	A:52165100;C:29584526;G:39654761;T:35999190;N:999076	74	0	52165100	29584526	39654761	35999190	999076	SRX5574332	SRS4536890	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.70228		0.19977		0.81505		0.52556		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50890	50890	SRR8784484	SRX5574331	SRS4536889	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 2 S11		strain:5D\|isolate:3\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 2 S11	DPHP D 30 2 S11	DPHP D 30 2 S11	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-2_S11_L001_R1_001.fastq.gz	fastq	181133063.0	2424959.0	D 30 2 S11 L001 R1 001.fastq.gz	0:74.70 1:0	A:59538982;C:31950249;G:46981647;T:41411578;N:1250607	74	0	59538982	31950249	46981647	41411578	1250607	SRX5574331	SRS4536889	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.69274		0.19587		0.81199		0.53253		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50891	50891	SRR8784485	SRX5574330	SRS4536888	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 3 2 S8		strain:5D\|isolate:6\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 3 2 S8	DPHP D 30 3 2 S8	DPHP D 30 3 2 S8	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-3-2_S8_L001_R1_001.fastq.gz	fastq	144659077.0	1979750.0	D 30 3 2 S8 L001 R1 001.fastq.gz	0:73.07 1:0	A:45008994;C:26259119;G:34182870;T:35418284;N:3789810	73	0	45008994	26259119	34182870	35418284	3789810	SRX5574330	SRS4536888	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76343		0.19294		0.79981		0.52722		73		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50892	50892	SRR8784486	SRX5574329	SRS4536887	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				DPHP D 30 3 S10		strain:5D\|isolate:5\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DPHP D 30 3 S10	DPHP D 30 3 S10	DPHP D 30 3 S10	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			D-30-3_S10_L001_R1_001.fastq.gz	fastq	208642460.0	2849099.0	D 30 3 S10 L001 R1 001.fastq.gz	0:73.23 1:0	A:64082607;C:37314617;G:50698008;T:51281410;N:5265818	73	0	64082607	37314617	50698008	51281410	5265818	SRX5574329	SRS4536887	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76279		0.20019		0.79703		0.53182		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50899	50899	SRR8784493	SRX5574322	SRS4536880	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 1 2 S5		strain:5D\|isolate:14\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 1 2 S5	Control F 30 1 2 S5	Control F 30 1 2 S5	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-1-2_S5_L001_R1_001.fastq.gz	fastq	184025156.0	2471206.0	F 30 1 2 S5 L001 R1 001.fastq.gz	0:74.47 1:0	A:59460329;C:34704834;G:46210350;T:42162468;N:1487175	74	0	59460329	34704834	46210350	42162468	1487175	SRX5574322	SRS4536880	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.71982		0.20558		0.81422		0.54265		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50900	50900	SRR8784494	SRX5574321	SRS4536879	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 1 S6		strain:5D\|isolate:13\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 1 S6	Control F 30 1 S6	Control F 30 1 S6	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-1_S6_L001_R1_001.fastq.gz	fastq	167461374.0	2244011.0	F 30 1 S6 L001 R1 001.fastq.gz	0:74.63 1:0	A:53497635;C:30881557;G:43359231;T:38396711;N:1326240	74	0	53497635	30881557	43359231	38396711	1326240	SRX5574321	SRS4536879	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.71657		0.21056		0.81347		0.53534		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50903	50903	SRR8784497	SRX5574318	SRS4536876	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 3 2 S1		strain:5D\|isolate:18\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 3 2 S1	Control F 30 3 2 S1	Control F 30 3 2 S1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-3-2_S1_L001_R1_001.fastq.gz	fastq	150754933.0	2005707.0	F 30 3 2 S1 L001 R1 001.fastq.gz	0:75.16 1:0	A:48638635;C:27543427;G:36117234;T:38241792;N:213845	75	0	48638635	27543427	36117234	38241792	213845	SRX5574318	SRS4536876	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76888		0.19109		0.79914		0.55487		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50904	50904	SRR8784498	SRX5574317	SRS4536875	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 3 S4		strain:5D\|isolate:17\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 3 S4	Control F 30 3 S4	Control F 30 3 S4	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-3_S4_L001_R1_001.fastq.gz	fastq	136108968.0	1808392.0	F 30 3 S4 L001 R1 001.fastq.gz	0:75.27 1:0	A:43464242;C:24432302;G:33489525;T:34557393;N:165506	75	0	43464242	24432302	33489525	34557393	165506	SRX5574317	SRS4536875	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76602		0.19243		0.79437		0.55662		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50905	50905	SRR8784499	SRX5574316	SRS4536874	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 2 2 S2		strain:5D\|isolate:16\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 2 2 S2	Control F 30 2 2 S2	Control F 30 2 2 S2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-2-2_S2_L001_R1_001.fastq.gz	fastq	136980240.0	1822208.0	F 30 2 2 S2 L001 R1 001.fastq.gz	0:75.17 1:0	A:43159141;C:25293742;G:34189453;T:34195924;N:141980	75	0	43159141	25293742	34189453	34195924	141980	SRX5574316	SRS4536874	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.77138		0.23812		0.80028		0.4318		73		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
50906	50906	SRR8784500	SRX5574315	SRS4536873	SRP189394	PRJNA511154	Diphenyl Phosphate Induced Toxicity During Embryonic Development	PRJNA511154	Other	The objective of this project was to rely on mRNA sequencing to determine the potential impacts of diphenyl phosphate DPHP on the embryonic transcriptome in zebrafish.				Control F 30 2 S5		strain:5D\|isolate:15\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Control F 30 2 S5	Control F 30 2 S5	Control F 30 2 S5	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP189394			F-30-2_S5_L001_R1_001.fastq.gz	fastq	147514404.0	1959720.0	F 30 2 S5 L001 R1 001.fastq.gz	0:75.27 1:0	A:45938492;C:26838492;G:37757031;T:36850878;N:129511	75	0	45938492	26838492	37757031	36850878	129511	SRX5574315	SRS4536873	SRA865872	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.7722		0.24196		0.79699		0.4319		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-03-25	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51775	51775	SRR9850655	SRX6605278	SRS5170107	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 1 S12 rep2		strain:5D\|isolate:13\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 1 S12 rep2	VC 30H 1 S12 rep2	VC 30H 1 S12 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-1_S12_L001_R1_001-rep2.fastq.gz	fastq	214451690.0	2857310.0	VC 30H 1 S12 L001 R1 001 rep2.fastq.gz	0:75.05 1:0	A:70373156;C:40335646;G:56583371;T:46774752;N:384765	75	0	70373156	40335646	56583371	46774752	384765	SRX6605278	SRS5170107	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.79135		0.18986		0.81109		0.5745		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51776	51776	SRR9850656	SRX6605277	SRS5170106	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 2 S5 rep2		strain:5D\|isolate:14\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 2 S5 rep2	VC 30H 2 S5 rep2	VC 30H 2 S5 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-2_S5_L001_R1_001-rep2.fastq.gz	fastq	225831816.0	3013697.0	VC 30H 2 S5 L001 R1 001 rep2.fastq.gz	0:74.94 1:0	A:74884869;C:41493176;G:59418803;T:49476791;N:558177	74	0	74884869	41493176	59418803	49476791	558177	SRX6605277	SRS5170106	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.79148		0.17245		0.81826		0.57312		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51779	51779	SRR9850659	SRX6605274	SRS5170103	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 2 S4 rep2		strain:5D\|isolate:17\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 2 S4 rep2	TPHP 30H 2 S4 rep2	TPHP 30H 2 S4 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-2_S4_L001_R1_001-rep2.fastq.gz	fastq	190443475.0	2534194.0	TPHP 30H 2 S4 L001 R1 001 rep2.fastq.gz	0:75.15 1:0	A:61762406;C:35761803;G:46746491;T:45955520;N:217255	75	0	61762406	35761803	46746491	45955520	217255	SRX6605274	SRS5170103	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.82189		0.17354		0.80286		0.58945		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51780	51780	SRR9850660	SRX6605273	SRS5170102	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 3 S3 rep2		strain:5D\|isolate:18\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 3 S3 rep2	TPHP 30H 3 S3 rep2	TPHP 30H 3 S3 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-3_S3_L001_R1_001-rep2.fastq.gz	fastq	203756306.0	2710328.0	TPHP 30H 3 S3 L001 R1 001 rep2.fastq.gz	0:75.18 1:0	A:66084783;C:37796994;G:51553200;T:48175069;N:146260	75	0	66084783	37796994	51553200	48175069	146260	SRX6605273	SRS5170102	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.81366		0.16393		0.80172		0.56399		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51781	51781	SRR9850661	SRX6605272	SRS5170101	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 3 S11 rep2		strain:5D\|isolate:15\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 3 S11 rep2	VC 30H 3 S11 rep2	VC 30H 3 S11 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-3_S11_L001_R1_001-rep2.fastq.gz	fastq	246195570.0	3284041.0	VC 30H 3 S11 L001 R1 001 rep2.fastq.gz	0:74.97 1:0	A:81577760;C:45730136;G:69244229;T:49099097;N:544348	74	0	81577760	45730136	69244229	49099097	544348	SRX6605272	SRS5170101	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76927		0.23225		0.83167		0.60203		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51782	51782	SRR9850662	SRX6605271	SRS5170100	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 1 S10 rep2		strain:5D\|isolate:16\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 1 S10 rep2	TPHP 30H 1 S10 rep2	TPHP 30H 1 S10 rep2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-1_S10_L001_R1_001-rep2.fastq.gz	fastq	108576130.0	1445012.0	TPHP 30H 1 S10 L001 R1 001 rep2.fastq.gz	0:75.14 1:0	A:34532346;C:20830575;G:28514938;T:24567029;N:131242	75	0	34532346	20830575	28514938	24567029	131242	SRX6605271	SRS5170100	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.81422		0.19725		0.81602		0.59356		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51787	51787	SRR9850667	SRX6605266	SRS5170095	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 3 S9 rep1		strain:5D\|isolate:3\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 3 S9 rep1	VC 30H 3 S9 rep1	VC 30H 3 S9 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-3_S9_L001_R1_001-rep1.fastq.gz	fastq	179751806.0	2398199.0	VC 30H 3 S9 L001 R1 001 rep1.fastq.gz	0:74.95 1:0	A:59567786;C:33434792;G:50404279;T:35931343;N:413606	74	0	59567786	33434792	50404279	35931343	413606	SRX6605266	SRS5170095	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.7688		0.23182		0.83272		0.5965		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51788	51788	SRR9850668	SRX6605265	SRS5170094	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 1 S7 rep1		strain:5D\|isolate:4\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 1 S7 rep1	TPHP 30H 1 S7 rep1	TPHP 30H 1 S7 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-1_S7_L001_R1_001-rep1.fastq.gz	fastq	152844797.0	2032948.0	TPHP 30H 1 S7 L001 R1 001 rep1.fastq.gz	0:75.18 1:0	A:48638640;C:29022484;G:38893945;T:36117325;N:172403	75	0	48638640	29022484	38893945	36117325	172403	SRX6605265	SRS5170094	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.8224		0.18948		0.80643		0.60363		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51789	51789	SRR9850669	SRX6605264	SRS5170093	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 1 S12 rep1		strain:5D\|isolate:1\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 1 S12 rep1	VC 30H 1 S12 rep1	VC 30H 1 S12 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-1_S12_L001_R1_001-rep1.fastq.gz	fastq	188024539.0	2505350.0	VC 30H 1 S12 L001 R1 001 rep1.fastq.gz	0:75.05 1:0	A:61707151;C:35389050;G:49592916;T:40988051;N:347371	75	0	61707151	35389050	49592916	40988051	347371	SRX6605264	SRS5170093	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.78842		0.18566		0.81221		0.58599		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51790	51790	SRR9850670	SRX6605263	SRS5170092	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				VC 30H 2 S10 rep1		strain:5D\|isolate:2\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	VC 30H 2 S10 rep1	VC 30H 2 S10 rep1	VC 30H 2 S10 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			VC-30H-2_S10_L001_R1_001-rep1.fastq.gz	fastq	208974583.0	2789057.0	VC 30H 2 S10 L001 R1 001 rep1.fastq.gz	0:74.93 1:0	A:69392953;C:38416462;G:54829339;T:45809878;N:525951	74	0	69392953	38416462	54829339	45809878	525951	SRX6605263	SRS5170092	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.78872		0.17214		0.81661		0.56755		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51793	51793	SRR9850673	SRX6605260	SRS5170089	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 2 S6 rep1		strain:5D\|isolate:5\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 2 S6 rep1	TPHP 30H 2 S6 rep1	TPHP 30H 2 S6 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-2_S6_L001_R1_001-rep1.fastq.gz	fastq	194841362.0	2592817.0	TPHP 30H 2 S6 L001 R1 001 rep1.fastq.gz	0:75.15 1:0	A:63263665;C:36573739;G:47683114;T:47088583;N:232261	75	0	63263665	36573739	47683114	47088583	232261	SRX6605260	SRS5170089	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.82011		0.1723		0.80338		0.58394		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
51794	51794	SRR9850674	SRX6605259	SRS5170088	SRP216607	PRJNA529921	mRNA Sequencing Identifies Liver as a Potential Target Organ for Triphenyl Phosphate in Embryonic Zebrafish	PRJNA529921	Other	The objectives of this study were to 1 rely on mRNA sequencing to identify pathways before and post cardiac looping 30 hpf and 48 hpf respectively that may be impacted following exposure to 10 µM TPHP from 24 hpf 48 hpf and 2 determine whether pre treatment with 2 µM fenretinide from 24 hpf 30 hpf mitigates cardiotoxicity related pathways within embryos exposed to TPHP from xxx 48 hpf.				TPHP 30H 3 S4 rep1		strain:5D\|isolate:6\|dev stage:30 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	TPHP 30H 3 S4 rep1	TPHP 30H 3 S4 rep1	TPHP 30H 3 S4 rep1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP216607			TPHP-30H-3_S4_L001_R1_001-rep1.fastq.gz	fastq	168122597.0	2236679.0	TPHP 30H 3 S4 L001 R1 001 rep1.fastq.gz	0:75.17 1:0	A:54706169;C:31138406;G:42526510;T:39600704;N:150808	75	0	54706169	31138406	42526510	39600704	150808	SRX6605259	SRS5170088	SRA928015	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.81103		0.16383		0.80223		0.568		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-07-28	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52310	52310	SRR10490653	SRX7179784	SRS5686601	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMP 24hpf 2 S1		strain:5D\|isolate:10\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMP 24hpf 2 S1	DMP 24hpf 2 S1	DMP 24hpf 2 S1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMP-24hpf-2_S1_L001_R1_001.fastq.gz	fastq	154522234.0	2051336.0	DMP 24hpf 2 S1 L001 R1 001.fastq.gz	0:75.33 1:0	A:53760130;C:29133871;G:35537868;T:35993942;N:96423	75	0	53760130	29133871	35537868	35993942	96423	SRX7179784	SRS5686601	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.7423		0.19917		0.81264		0.62122		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52311	52311	SRR10490654	SRX7179783	SRS5686600	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMP 24hpf 1 S11		strain:5D\|isolate:9\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMP 24hpf 1 S11	DMP 24hpf 1 S11	DMP 24hpf 1 S11	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMP-24hpf-1_S11_L001_R1_001.fastq.gz	fastq	164424909.0	2182222.0	DMP 24hpf 1 S11 L001 R1 001.fastq.gz	0:75.35 1:0	A:57308208;C:30191855;G:37128149;T:39702440;N:94257	75	0	57308208	30191855	37128149	39702440	94257	SRX7179783	SRS5686600	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.75187		0.17722		0.80424		0.59348		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52312	52312	SRR10490655	SRX7179782	SRS5686599	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				CigDMP 24hpf 4 S3		strain:5D\|isolate:8\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	CigDMP 24hpf 4 S3	CigDMP 24hpf 4 S3	CigDMP 24hpf 4 S3	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			CigDMP-24hpf-4_S3_L001_R1_001.fastq.gz	fastq	168508233.0	2237284.0	CigDMP 24hpf 4 S3 L001 R1 001.fastq.gz	0:75.32 1:0	A:61448456;C:29365573;G:37720412;T:39833702;N:140090	75	0	61448456	29365573	37720412	39833702	140090	SRX7179782	SRS5686599	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.72054		0.12417		0.82718		0.6432		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52313	52313	SRR10490656	SRX7179781	SRS5686598	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				CigDMP 24hpf 3 S12		strain:5D\|isolate:7\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	CigDMP 24hpf 3 S12	CigDMP 24hpf 3 S12	CigDMP 24hpf 3 S12	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			CigDMP-24hpf-3_S12_L001_R1_001.fastq.gz	fastq	145084817.0	1924713.0	CigDMP 24hpf 3 S12 L001 R1 001.fastq.gz	0:75.38 1:0	A:46287612;C:27449291;G:32774875;T:38473634;N:99405	75	0	46287612	27449291	32774875	38473634	99405	SRX7179781	SRS5686598	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.83194		0.14768		0.8116		0.60811		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52314	52314	SRR10490657	SRX7179780	SRS5686597	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				CigDMP 24hpf 2 S13		strain:5D\|isolate:6\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	CigDMP 24hpf 2 S13	CigDMP 24hpf 2 S13	CigDMP 24hpf 2 S13	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			CigDMP-24hpf-2_S13_L001_R1_001.fastq.gz	fastq	282221813.0	3749290.0	CigDMP 24hpf 2 S13 L001 R1 001.fastq.gz	0:75.27 1:0	A:96636505;C:53828518;G:69820577;T:61607663;N:328550	75	0	96636505	53828518	69820577	61607663	328550	SRX7179780	SRS5686597	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.70551		0.17608		0.83842		0.52731		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52315	52315	SRR10490658	SRX7179779	SRS5686596	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				CigDMP 24hpf 1 S10		strain:5D\|isolate:5\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	CigDMP 24hpf 1 S10	CigDMP 24hpf 1 S10	CigDMP 24hpf 1 S10	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			CigDMP-24hpf-1_S10_L001_R1_001.fastq.gz	fastq	166244445.0	2206862.0	CigDMP 24hpf 1 S10 L001 R1 001.fastq.gz	0:75.33 1:0	A:56629344;C:30735682;G:37080320;T:41653531;N:145568	75	0	56629344	30735682	37080320	41653531	145568	SRX7179779	SRS5686596	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.79315		0.14174		0.81199		0.59223		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52316	52316	SRR10490659	SRX7179778	SRS5686595	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				Cig 24hpf 4 S2		strain:5D\|isolate:4\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Cig 24hpf 4 S2	Cig 24hpf 4 S2	Cig 24hpf 4 S2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			Cig-24hpf-4_S2_L001_R1_001.fastq.gz	fastq	365700453.0	4854033.0	Cig 24hpf 4 S2 L001 R1 001.fastq.gz	0:75.34 1:0	A:127185124;C:68098631;G:85365420;T:84769467;N:281811	75	0	127185124	68098631	85365420	84769467	281811	SRX7179778	SRS5686595	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.75787		0.167		0.82024		0.65882		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52317	52317	SRR10490660	SRX7179777	SRS5686594	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				Cig 24hpf 3 S7		strain:5D\|isolate:3\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Cig 24hpf 3 S7	Cig 24hpf 3 S7	Cig 24hpf 3 S7	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			Cig-24hpf-3_S7_L001_R1_001.fastq.gz	fastq	161187457.0	2138808.0	Cig 24hpf 3 S7 L001 R1 001.fastq.gz	0:75.36 1:0	A:56647234;C:30651392;G:36617181;T:37188808;N:82842	75	0	56647234	30651392	36617181	37188808	82842	SRX7179777	SRS5686594	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76327		0.17071		0.81688		0.66245		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52318	52318	SRR10490661	SRX7179776	SRS5686593	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMSO 24hpf 4 S9		strain:5D\|isolate:16\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 4 S9	DMSO 24hpf 4 S9	DMSO 24hpf 4 S9	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMSO-24hpf-4_S9_L001_R1_001.fastq.gz	fastq	126406328.0	1678421.0	DMSO 24hpf 4 S9 L001 R1 001.fastq.gz	0:75.31 1:0	A:45620840;C:24053460;G:28105201;T:28582915;N:43912	75	0	45620840	24053460	28105201	28582915	43912	SRX7179776	SRS5686593	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.7399		0.22979		0.82185		0.62477		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52319	52319	SRR10490662	SRX7179775	SRS5686592	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMSO 24hpf 3 S15		strain:5D\|isolate:15\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 3 S15	DMSO 24hpf 3 S15	DMSO 24hpf 3 S15	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMSO-24hpf-3_S15_L001_R1_001.fastq.gz	fastq	123251397.0	1635854.0	DMSO 24hpf 3 S15 L001 R1 001.fastq.gz	0:75.34 1:0	A:43811855;C:23533043;G:27236165;T:28625055;N:45279	75	0	43811855	23533043	27236165	28625055	45279	SRX7179775	SRS5686592	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.75956		0.23348		0.81302		0.62477		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52320	52320	SRR10490663	SRX7179774	SRS5686591	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMSO 24hpf 2 S16.1		strain:5D\|isolate:14\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 2 S16.1	DMSO 24hpf 2 S16.1	DMSO 24hpf 2 S16.1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMSO-24hpf-2_S16_L001_R1_001.fastq.gz	fastq	132048224.0	1754609.0	DMSO 24hpf 2 S16 L001 R1 001.fastq.gz	0:75.26 1:0	A:48638287;C:24900943;G:30060914;T:28333971;N:114109	75	0	48638287	24900943	30060914	28333971	114109	SRX7179774	SRS5686591	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.70403		0.21158		0.82944		0.6256		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52321	52321	SRR10490664	SRX7179773	SRS5686590	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMSO 24hpf 1 S14		strain:5D\|isolate:13\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 1 S14	DMSO 24hpf 1 S14	DMSO 24hpf 1 S14	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMSO-24hpf-1_S14_L001_R1_001.fastq.gz	fastq	139193171.0	1848793.0	DMSO 24hpf 1 S14 L001 R1 001.fastq.gz	0:75.29 1:0	A:52588588;C:25826387;G:32607820;T:28094765;N:75611	75	0	52588588	25826387	32607820	28094765	75611	SRX7179773	SRS5686590	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.66115		0.21183		0.83871		0.6129		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52322	52322	SRR10490665	SRX7179772	SRS5686589	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMP 24hpf 4 S6		strain:5D\|isolate:12\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMP 24hpf 4 S6	DMP 24hpf 4 S6	DMP 24hpf 4 S6	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMP-24hpf-4_S6_L001_R1_001.fastq.gz	fastq	226343412.0	3004979.0	DMP 24hpf 4 S6 L001 R1 001.fastq.gz	0:75.32 1:0	A:78184324;C:41397790;G:50552220;T:56036286;N:172792	75	0	78184324	41397790	50552220	56036286	172792	SRX7179772	SRS5686589	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76278		0.12992		0.81134		0.56376		73		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52323	52323	SRR10490666	SRX7179771	SRS5686588	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				DMP 24hpf 3 S4		strain:5D\|isolate:11\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMP 24hpf 3 S4	DMP 24hpf 3 S4	DMP 24hpf 3 S4	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			DMP-24hpf-3_S4_L001_R1_001.fastq.gz	fastq	175279417.0	2327885.0	DMP 24hpf 3 S4 L001 R1 001.fastq.gz	0:75.30 1:0	A:60956678;C:31641832;G:39622230;T:42845005;N:213672	75	0	60956678	31641832	39622230	42845005	213672	SRX7179771	SRS5686588	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.75785		0.13198		0.81008		0.5685		72		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52324	52324	SRR10490667	SRX7179770	SRS5686587	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				Cig 24hpf 2 S5		strain:5D\|isolate:2\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Cig 24hpf 2 S5	Cig 24hpf 2 S5	Cig 24hpf 2 S5	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			Cig-24hpf-2_S5_L001_R1_001.fastq.gz	fastq	135561364.0	1798064.0	Cig 24hpf 2 S5 L001 R1 001.fastq.gz	0:75.39 1:0	A:48402460;C:24975846;G:31300454;T:30853581;N:29023	75	0	48402460	24975846	31300454	30853581	29023	SRX7179770	SRS5686587	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.72836		0.17494		0.82394		0.64987		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
52325	52325	SRR10490668	SRX7179769	SRS5686586	SRP230531	PRJNA544341	PPAR? agonist induced disruption of dorsoventral patterning in zebrafish	PRJNA544341	Other	The objectives of this study were to rely on mRNA sequencing to identify pathways that may be impacted following exposure to ciglitazone in the presence or absence of dorsomorphin within the first 24 h of development.				Cig 24hpf 1 S8		strain:5D\|isolate:1\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	Cig 24hpf 1 S8	Cig 24hpf 1 S8	Cig 24hpf 1 S8	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP230531			Cig-24hpf-1_S8_L001_R1_001.fastq.gz	fastq	166787278.0	2215546.0	Cig 24hpf 1 S8 L001 R1 001.fastq.gz	0:75.28 1:0	A:61581342;C:31125964;G:37668681;T:36274594;N:136697	75	0	61581342	31125964	37668681	36274594	136697	SRX7179769	SRS5686586	SRA998591	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.72186		0.18406		0.83796		0.70527		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-19	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53838	53838	SRR10393503	SRX7093890	SRS5606540	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				DMSO 24hpf 4 S2		strain:5D\|isolate:8\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 4 S2	DMSO 24hpf 4 S2	DMSO 24hpf 4 S2	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			DMSO-24hpf-4_S2_L001_R1_001.fastq.gz	fastq	169544605.0	2252683.0	DMSO 24hpf 4 S2 L001 R1 001.fastq.gz	0:75.26 1:0	A:61748050;C:32984735;G:39276677;T:35329305;N:205838	75	0	61748050	32984735	39276677	35329305	205838	SRX7093890	SRS5606540	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.69109		0.19681		0.82954		0.60982		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53839	53839	SRR10393504	SRX7093889	SRS5606539	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				DMSO 24hpf 3 S1.1		strain:5D\|isolate:7\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 3 S1.1	DMSO 24hpf 3 S1.1	DMSO 24hpf 3 S1.1	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			DMSO-24hpf-3_S1_L001_R1_001.fastq.gz	fastq	176226566.0	2341531.0	DMSO 24hpf 3 S1 L001 R1 001.fastq.gz	0:75.26 1:0	A:62881279;C:35048395;G:42851474;T:35198274;N:247144	75	0	62881279	35048395	42851474	35198274	247144	SRX7093889	SRS5606539	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.68135		0.2003		0.83593		0.38242		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53840	53840	SRR10393505	SRX7093888	SRS5606538	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				DMSO 24hpf 2 S16		strain:5D\|isolate:6\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 2 S16	DMSO 24hpf 2 S16	DMSO 24hpf 2 S16	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			DMSO-24hpf-2_S16_L001_R1_001.fastq.gz	fastq	164476462.0	2183034.0	DMSO 24hpf 2 S16 L001 R1 001.fastq.gz	0:75.34 1:0	A:53207677;C:34232653;G:40852867;T:36039010;N:144255	75	0	53207677	34232653	40852867	36039010	144255	SRX7093888	SRS5606538	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.76856		0.24847		0.83246		0.58545		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53841	53841	SRR10393506	SRX7093887	SRS5606537	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				DMSO 24hpf 1 S15		strain:5D\|isolate:5\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	DMSO 24hpf 1 S15	DMSO 24hpf 1 S15	DMSO 24hpf 1 S15	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			DMSO-24hpf-1_S15_L001_R1_001.fastq.gz	fastq	169336832.0	2248766.0	DMSO 24hpf 1 S15 L001 R1 001.fastq.gz	0:75.30 1:0	A:59465104;C:33650141;G:42278679;T:33730782;N:212126	75	0	59465104	33650141	42278679	33730782	212126	SRX7093887	SRS5606537	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.6226		0.1924		0.84522		0.59451		74		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53844	53844	SRR10393509	SRX7093884	SRS5606534	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				PFOSA 24hpf 4 S6		strain:5D\|isolate:16\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	PFOSA 24hpf 4 S6	PFOSA 24hpf 4 S6	PFOSA 24hpf 4 S6	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			PFOSA-24hpf-4_S6_L001_R1_001.fastq.gz	fastq	159041121.0	2114174.0	PFOSA 24hpf 4 S6 L001 R1 001.fastq.gz	0:75.23 1:0	A:55915704;C:30847758;G:41552886;T:30324805;N:399968	75	0	55915704	30847758	41552886	30324805	399968	SRX7093884	SRS5606534	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.69132		0.20998		0.86265		0.66863		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53845	53845	SRR10393510	SRX7093883	SRS5606533	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				PFOSA 24hpf 3 S5		strain:5D\|isolate:15\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	PFOSA 24hpf 3 S5	PFOSA 24hpf 3 S5	PFOSA 24hpf 3 S5	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			PFOSA-24hpf-3_S5_L001_R1_001.fastq.gz	fastq	176283118.0	2337643.0	PFOSA 24hpf 3 S5 L001 R1 001.fastq.gz	0:75.41 1:0	A:60031957;C:36253921;G:44609655;T:35286711;N:100874	75	0	60031957	36253921	44609655	35286711	100874	SRX7093883	SRS5606533	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.70864		0.24706		0.85145		0.66729		75		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53846	53846	SRR10393511	SRX7093882	SRS5606532	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				PFOSA 24hpf 2 S4		strain:5D\|isolate:14\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	PFOSA 24hpf 2 S4	PFOSA 24hpf 2 S4	PFOSA 24hpf 2 S4	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			PFOSA-24hpf-2_S4_L001_R1_001.fastq.gz	fastq	147703215.0	1958310.0	PFOSA 24hpf 2 S4 L001 R1 001.fastq.gz	0:75.42 1:0	A:47861793;C:31057983;G:38594553;T:30118087;N:70799	75	0	47861793	31057983	38594553	30118087	70799	SRX7093882	SRS5606532	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.74377		0.27293		0.85153		0.65156		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures
53847	53847	SRR10393512	SRX7093881	SRS5606531	SRP228416	PRJNA563973	High Content Screening in Zebrafish Identifies Perfluorooctanesulfonamide PFOSA as a Potent Developmental Toxicant	PRJNA563973	Other	The objective of this study was to rely on mRNA sequencing to quantify whole transcriptome responses to perfluorooctanesulfonamide PFOSA exposure within the first 24 h of zebrafish development.				PFOSA 24hpf 1 S3		strain:5D\|isolate:13\|dev stage:24 hpf\|sex:not applicable\|tissue:embryo\|BioSampleModel:Model organism or animal	PFOSA 24hpf 1 S3	PFOSA 24hpf 1 S3	PFOSA 24hpf 1 S3	QuantSeq three prime mRNA Seq Library Prep Kit FWD		RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	SINGLE	ILLUMINA	Illumina MiniSeq	SRP228416			PFOSA-24hpf-1_S3_L001_R1_001.fastq.gz	fastq	161246238.0	2141247.0	PFOSA 24hpf 1 S3 L001 R1 001.fastq.gz	0:75.30 1:0	A:55258914;C:33556086;G:42165900;T:30048319;N:217019	75	0	55258914	33556086	42165900	30048319	217019	SRX7093881	SRS5606531	SRA989836	University of California, Riverside\|Environmental Sciences	University of California, Riverside	1	0.66111		0.25796		0.8677		0.64541		76		B		usable mapping rate	illumina	miseq	3prime	poly_a	lexogen	bulk	unknown	unknown	United States	2019-11-05	Pharyngula	Embryo	Embryo Imprecise	All anatomical structures

Advanced export

JSON shape: default, array, newline-delimited

CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;