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5,530 rows where devstage_curation = "Pharyngula" and experiment.library_layout = "PAIRED"

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tissue_curation >10

technology 10

experiment.library_selection >10

experiment.library_strategy 5

experiment.platform 3

experiment.library_source 2

experiment.library_layout 1

  • PAIRED · 5,530 ✖

devstage_curation_coarse 1

devstage_curation 1

  • Pharyngula · 5,530 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
306 306 DRR224536 DRX214821 DRS236344 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf C SAMD00222567   sample name:40hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567 DRX214821 40hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222567       14926054400.0 74630272.0 DRR224536 0:100 1:100 A:3647365116;C:3826172690;G:3866071867;T:3586333511;N:111216 100 100     3647365116 3826172690 3866071867 3586333511 111216 DRX214821 DRS236344 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96395 0.96168 0.05081 0.04957 0.75489 0.75607 0.51046 0.52135 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
307 307 DRR224535 DRX214820 DRS236343 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf B SAMD00222566   sample name:40hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566 DRX214820 40hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222566       14413995800.0 72069979.0 DRR224535 0:100 1:100 A:3598207137;C:3642219692;G:3750145663;T:3423315835;N:107473 100 100     3598207137 3642219692 3750145663 3423315835 107473 DRX214820 DRS236343 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97396 0.97107 0.04686 0.04549 0.7444 0.74968 0.50051 0.49798 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
308 308 DRR224534 DRX214819 DRS236342 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 40hpf A SAMD00222565   sample name:40hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565 DRX214819 40hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222565       14351831800.0 71759159.0 DRR224534 0:100 1:100 A:3552114377;C:3639389412;G:3719404253;T:3440817088;N:106670 100 100     3552114377 3639389412 3719404253 3440817088 106670 DRX214819 DRS236342 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.96606 0.96569 0.04249 0.04107 0.7514 0.75367 0.49762 0.49753 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
309 309 DRR224533 DRX214818 DRS236341 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf C SAMD00222564   sample name:32hpf C                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564 DRX214818 32hpf C 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222564       18499667800.0 92498339.0 DRR224533 0:100 1:100 A:4655671152;C:4605325822;G:4688156846;T:4550378341;N:135639 100 100     4655671152 4605325822 4688156846 4550378341 135639 DRX214818 DRS236341 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.9673 0.96864 0.04184 0.04008 0.73087 0.73318 0.48331 0.48043 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
310 310 DRR224532 DRX214817 DRS236340 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf B SAMD00222563   sample name:32hpf B                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563 DRX214817 32hpf B 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222563       19952418000.0 99762090.0 DRR224532 0:100 1:100 A:4972665902;C:5012518349;G:5094132814;T:4872951533;N:149402 100 100     4972665902 5012518349 5094132814 4872951533 149402 DRX214817 DRS236340 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97325 0.97252 0.03729 0.03575 0.71591 0.7163 0.47191 0.47859 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
311 311 DRR224531 DRX214816 DRS236339 DRP008458 PRJDB9741 RNA seq for developing pectoral fin in zebrafish DRP008458 Other From the developmental view of fin to limb transition an important event in vertebrate evolution we seek fish specific genes that show characteristic expression pattern in the developing fin.       pectoral fin bud from gM1116A zebrafish at 32hpf A SAMD00222562   sample name:32hpf A                 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562 DRX214816 32hpf A 1 Illumina TruSeq Stranded mRNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA PAIRED ILLUMINA Illumina NovaSeq 6000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008458 Illumina NovaSeq 6000 paired end sequencing of SAMD00222562       16357024800.0 81785124.0 DRR224531 0:100 1:100 A:4049805675;C:4130985751;G:4172952730;T:4003159212;N:121432 100 100     4049805675 4130985751 4172952730 4003159212 121432 DRX214816 DRS236339 DRA010086 TOHOKUGL|Laboratory of organ morphogenesis Graduate School of Life Sciences, Tohoku University 2 0.97046 0.96886 0.03577 0.03489 0.73257 0.73231 0.4825 0.48849 100 100 B B biological fallback assumption illumina novaseq_era unknown poly_a trueseq bulk unknown unknown   Japan 2022-04-21 Pharyngula Embryo Fin Surface Structure
3345 3345 ERR1396889 ERX1468148 ERS1021717 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool12 SAMEA3714568 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714568|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:19Z|INSDC status:public|Submitter Id:970f4210 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTCTTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:970f4210 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#24 15565774 Illumina sequencing of library 15565774 constructed from sample accession ERS1021717 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTCTTGGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#24.cram cram 926066960.0 7123592.0 SC RUN 18685 6#24 0:55 1:75 A:249812889;C:169806963;G:169128458;T:337109503;N:209147 55 75     249812889 169806963 169128458 337109503 209147 ERX1468148 ERS1021717 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.33451 0.62633 0.21494 0.22956 0.95327 0.86669 0.49907 0.50963 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3346 3346 ERR1396888 ERX1468147 ERS1021716 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool11 SAMEA3714567 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714567|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:19Z|INSDC status:public|Submitter Id:97090080 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATTCATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:97090080 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#23 15565773 Illumina sequencing of library 15565773 constructed from sample accession ERS1021716 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GATTCATC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#23.cram cram 1365570180.0 10504386.0 SC RUN 18685 6#23 0:55 1:75 A:363021139;C:248487745;G:250163428;T:503567246;N:330622 55 75     363021139 248487745 250163428 503567246 330622 ERX1468147 ERS1021716 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.32175 0.65254 0.1887 0.20169 0.95014 0.8589 0.57724 0.5392 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3347 3347 ERR1396887 ERX1468146 ERS1021715 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool10 SAMEA3714566 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714566|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:18Z|INSDC status:public|Submitter Id:970297e0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTAACTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:970297e0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#22 15565772 Illumina sequencing of library 15565772 constructed from sample accession ERS1021715 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCTAACTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#22.cram cram 1483284400.0 11409880.0 SC RUN 18685 6#22 0:55 1:75 A:393714218;C:268451904;G:278699082;T:542059360;N:359836 55 75     393714218 268451904 278699082 542059360 359836 ERX1468146 ERS1021715 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.28644 0.66254 0.16178 0.18284 0.95526 0.86048 0.6107 0.55128 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3348 3348 ERR1396886 ERX1468145 ERS1021714 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool9 SAMEA3714565 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714565|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:18Z|INSDC status:public|Submitter Id:96fc5650 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCACTGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96fc5650 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#21 15565771 Illumina sequencing of library 15565771 constructed from sample accession ERS1021714 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCACTGTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#21.cram cram 1280108050.0 9846985.0 SC RUN 18685 6#21 0:55 1:75 A:344137791;C:233171556;G:237129632;T:465357901;N:311170 55 75     344137791 233171556 237129632 465357901 311170 ERX1468145 ERS1021714 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26487 0.62998 0.16309 0.18935 0.95499 0.86271 0.55504 0.53117 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3349 3349 ERR1396885 ERX1468144 ERS1021713 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool8 SAMEA3714564 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714564|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:17Z|INSDC status:public|Submitter Id:96f5edb0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCTGTTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96f5edb0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#20 15565770 Illumina sequencing of library 15565770 constructed from sample accession ERS1021713 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCCTGTTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#20.cram cram 1185659670.0 9120459.0 SC RUN 18685 6#20 0:55 1:75 A:317055059;C:218894924;G:226769911;T:422667460;N:272316 55 75     317055059 218894924 226769911 422667460 272316 ERX1468144 ERS1021713 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27477 0.66845 0.16194 0.20039 0.95337 0.85857 0.58754 0.56051 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3350 3350 ERR1396884 ERX1468143 ERS1021712 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool7 SAMEA3714563 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714563|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:17Z|INSDC status:public|Submitter Id:96efac20 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACCTTAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96efac20 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#19 15565769 Illumina sequencing of library 15565769 constructed from sample accession ERS1021712 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GACCTTAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#19.cram cram 1705428530.0 13118681.0 SC RUN 18685 6#19 0:55 1:75 A:448372852;C:317388335;G:325846307;T:613405686;N:415350 55 75     448372852 317388335 325846307 613405686 415350 ERX1468143 ERS1021712 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27302 0.61606 0.17399 0.19057 0.95491 0.86831 0.54043 0.44239 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3351 3351 ERR1396883 ERX1468142 ERS1021711 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool6 SAMEA3714562 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714562|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:17Z|INSDC status:public|Submitter Id:96e94380 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCAATCCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96e94380 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#18 15565768 Illumina sequencing of library 15565768 constructed from sample accession ERS1021711 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCAATCCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#18.cram cram 1307543640.0 10058028.0 SC RUN 18685 6#18 0:55 1:75 A:352537015;C:236980921;G:241498004;T:476224714;N:302986 55 75     352537015 236980921 241498004 476224714 302986 ERX1468142 ERS1021711 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27702 0.61804 0.17799 0.19848 0.95526 0.862 0.42051 0.53104 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3352 3352 ERR1396882 ERX1468141 ERS1021710 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool5 SAMEA3714561 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714561|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:16Z|INSDC status:public|Submitter Id:96e301f0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96e301f0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#17 15565767 Illumina sequencing of library 15565767 constructed from sample accession ERS1021710 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTGTGTCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#17.cram cram 1358222190.0 10447863.0 SC RUN 18685 6#17 0:55 1:75 A:371186227;C:248614067;G:242650329;T:495462318;N:309249 55 75     371186227 248614067 242650329 495462318 309249 ERX1468141 ERS1021710 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.29886 0.63743 0.19481 0.20388 0.95479 0.85665 0.55727 0.51313 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3353 3353 ERR1396881 ERX1468140 ERS1021709 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool4 SAMEA3714560 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714560|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:16Z|INSDC status:public|Submitter Id:96dc9950 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATAGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96dc9950 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#16 15565766 Illumina sequencing of library 15565766 constructed from sample accession ERS1021709 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GATAGAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#16.cram cram 1300716040.0 10005508.0 SC RUN 18685 6#16 0:55 1:75 A:351761671;C:246590142;G:235018150;T:467017091;N:328986 55 75     351761671 246590142 235018150 467017091 328986 ERX1468140 ERS1021709 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26661 0.61348 0.18065 0.19546 0.95996 0.86547 0.50565 0.50777 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3354 3354 ERR1396880 ERX1468139 ERS1021708 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool3 SAMEA3714559 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714559|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:15Z|INSDC status:public|Submitter Id:96d657c0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGATTAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96d657c0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#15 15565765 Illumina sequencing of library 15565765 constructed from sample accession ERS1021708 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GGATTAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#15.cram cram 1266409040.0 9741608.0 SC RUN 18685 6#15 0:55 1:75 A:342885413;C:235723686;G:224391604;T:463093581;N:314756 55 75     342885413 235723686 224391604 463093581 314756 ERX1468139 ERS1021708 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.30465 0.63526 0.19903 0.19803 0.95459 0.8631 0.44401 0.52659 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3355 3355 ERR1396879 ERX1468138 ERS1021707 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool2 SAMEA3714558 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714558|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:15Z|INSDC status:public|Submitter Id:96cfc810 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTTGTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96cfc810 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#14 15565764 Illumina sequencing of library 15565764 constructed from sample accession ERS1021707 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTTGTCGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#14.cram cram 1593882940.0 12260638.0 SC RUN 18685 6#14 0:55 1:75 A:436552120;C:297980137;G:295446619;T:563525107;N:378957 55 75     436552120 297980137 295446619 563525107 378957 ERX1468138 ERS1021707 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.29716 0.63812 0.2032 0.22105 0.9571 0.86967 0.53582 0.52092 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3356 3356 ERR1396878 ERX1468137 ERS1021706 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 pool1 SAMEA3714557 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714557|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:14Z|INSDC status:public|Submitter Id:96c98680 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGGATGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96c98680 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#13 15565763 Illumina sequencing of library 15565763 constructed from sample accession ERS1021706 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GAGGATGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#13.cram cram 1488090500.0 11446850.0 SC RUN 18685 6#13 0:55 1:75 A:404930649;C:280154739;G:269563652;T:533080772;N:360688 55 75     404930649 280154739 269563652 533080772 360688 ERX1468137 ERS1021706 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27461 0.62332 0.18698 0.2072 0.95887 0.86884 0.49614 0.49392 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3357 3357 ERR1396877 ERX1468136 ERS1021705 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 12 SAMEA3714556 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714556|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:14Z|INSDC status:public|Submitter Id:96c31de0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTAAGGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96c31de0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#12 15565762 Illumina sequencing of library 15565762 constructed from sample accession ERS1021705 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTAAGGTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#12.cram cram 1350711050.0 10390085.0 SC RUN 18685 6#12 0:55 1:75 A:363787520;C:248639725;G:239591263;T:498370909;N:321633 55 75     363787520 248639725 239591263 498370909 321633 ERX1468136 ERS1021705 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.31947 0.62853 0.20895 0.22963 0.95365 0.8664 0.52057 0.4905 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3358 3358 ERR1396876 ERX1468135 ERS1021704 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 11 SAMEA3714555 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714555|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:13Z|INSDC status:public|Submitter Id:96bcb540 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTCCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96bcb540 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#11 15565761 Illumina sequencing of library 15565761 constructed from sample accession ERS1021704 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCTCCTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#11.cram cram 1852568380.0 14250526.0 SC RUN 18685 6#11 0:55 1:75 A:486265567;C:346601909;G:360610330;T:658654180;N:436394 55 75     486265567 346601909 360610330 658654180 436394 ERX1468135 ERS1021704 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.30037 0.6757 0.1815 0.19247 0.95268 0.869 0.55066 0.55386 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3359 3359 ERR1396875 ERX1468134 ERS1021703 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 10 SAMEA3714554 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714554|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:13Z|INSDC status:public|Submitter Id:96b5fe80 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGCCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96b5fe80 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#10 15565760 Illumina sequencing of library 15565760 constructed from sample accession ERS1021703 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GAGCCAAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#10.cram cram 1055159430.0 8116611.0 SC RUN 18685 6#10 0:55 1:75 A:280511716;C:192442412;G:194430131;T:387513886;N:261285 55 75     280511716 192442412 194430131 387513886 261285 ERX1468134 ERS1021703 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26979 0.64651 0.16504 0.18069 0.95629 0.85762 0.53869 0.51103 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3360 3360 ERR1396874 ERX1468133 ERS1021702 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 9 SAMEA3714553 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714553|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:12Z|INSDC status:public|Submitter Id:96af95e0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGAATGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96af95e0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#9 15565759 Illumina sequencing of library 15565759 constructed from sample accession ERS1021702 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GGAATGAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#9.cram cram 1108886220.0 8529894.0 SC RUN 18685 6#9 0:55 1:75 A:297948436;C:201055464;G:200125090;T:409482559;N:274671 55 75     297948436 201055464 200125090 409482559 274671 ERX1468133 ERS1021702 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.28731 0.64443 0.1689 0.1794 0.95607 0.85924 0.61561 0.53619 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3361 3361 ERR1396873 ERX1468132 ERS1021701 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 8 SAMEA3714552 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714552|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:12Z|INSDC status:public|Submitter Id:96a95450 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTCGCTAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96a95450 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#8 15565758 Illumina sequencing of library 15565758 constructed from sample accession ERS1021701 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTCGCTAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#8.cram cram 1346011160.0 10353932.0 SC RUN 18685 6#8 0:55 1:75 A:363528168;C:243198547;G:244242505;T:494726959;N:314981 55 75     363528168 243198547 244242505 494726959 314981 ERX1468132 ERS1021701 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27905 0.63301 0.17483 0.19596 0.95716 0.85869 0.44022 0.53172 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3362 3362 ERR1396872 ERX1468131 ERS1021700 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 7 SAMEA3714551 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714551|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:11Z|INSDC status:public|Submitter Id:96a360e0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTTAGCCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:96a360e0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#7 15565757 Illumina sequencing of library 15565757 constructed from sample accession ERS1021700 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTTAGCCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#7.cram cram 1620500960.0 12465392.0 SC RUN 18685 6#7 0:55 1:75 A:442243587;C:291519007;G:296338903;T:590008026;N:391437 55 75     442243587 291519007 296338903 590008026 391437 ERX1468131 ERS1021700 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.29596 0.63639 0.17566 0.197 0.95491 0.86523 0.63953 0.56904 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3363 3363 ERR1396871 ERX1468130 ERS1021699 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 6 SAMEA3714550 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714550|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:10Z|INSDC status:public|Submitter Id:969d6d70 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCATGGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:969d6d70 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#6 15565756 Illumina sequencing of library 15565756 constructed from sample accession ERS1021699 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCATGGCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#6.cram cram 1087952190.0 8368863.0 SC RUN 18685 6#6 0:55 1:75 A:289642733;C:202777679;G:204472524;T:390801642;N:257612 55 75     289642733 202777679 204472524 390801642 257612 ERX1468130 ERS1021699 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.31047 0.65107 0.18848 0.20582 0.95586 0.86667 0.40949 0.54161 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3364 3364 ERR1396870 ERX1468129 ERS1021698 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 5 SAMEA3714549 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714549|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:10Z|INSDC status:public|Submitter Id:9697ef30 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGGTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:9697ef30 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#5 15565755 Illumina sequencing of library 15565755 constructed from sample accession ERS1021698 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GAGGTGCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#5.cram cram 1021257120.0 7855824.0 SC RUN 18685 6#5 0:55 1:75 A:273370522;C:191049318;G:187251895;T:369345360;N:240025 55 75     273370522 191049318 187251895 369345360 240025 ERX1468129 ERS1021698 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27847 0.64606 0.1605 0.18058 0.9557 0.86553 0.59743 0.53872 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3365 3365 ERR1396869 ERX1468128 ERS1021697 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 4 SAMEA3714548 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714548|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:09Z|INSDC status:public|Submitter Id:9692bf10 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTACATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:9692bf10 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#4 15565754 Illumina sequencing of library 15565754 constructed from sample accession ERS1021697 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GTACATCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#4.cram cram 1696396000.0 13049200.0 SC RUN 18685 6#4 0:55 1:75 A:457819486;C:303991354;G:305053082;T:629115166;N:416912 55 75     457819486 303991354 305053082 629115166 416912 ERX1468128 ERS1021697 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27397 0.63272 0.16262 0.18015 0.95584 0.86115 0.5973 0.54809 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3366 3366 ERR1396868 ERX1468127 ERS1021696 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 3 SAMEA3714547 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714547|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:08Z|INSDC status:public|Submitter Id:968db600 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAATCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:968db600 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#3 15565753 Illumina sequencing of library 15565753 constructed from sample accession ERS1021696 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GAATCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#3.cram cram 1355469960.0 10426692.0 SC RUN 18685 6#3 0:55 1:75 A:363129134;C:248645578;G:249854065;T:493512022;N:329161 55 75     363129134 248645578 249854065 493512022 329161 ERX1468127 ERS1021696 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2578 0.64153 0.15192 0.16981 0.95686 0.85995 0.5238 0.50125 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3367 3367 ERR1396867 ERX1468126 ERS1021695 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 2 SAMEA3714546 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714546|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:08Z|INSDC status:public|Submitter Id:968885e0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGTCGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:968885e0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#2 15565752 Illumina sequencing of library 15565752 constructed from sample accession ERS1021695 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GGTCGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#2.cram cram 1400819420.0 10775534.0 SC RUN 18685 6#2 0:55 1:75 A:382564903;C:256549950;G:254427157;T:506955065;N:322345 55 75     382564903 256549950 254427157 506955065 322345 ERX1468126 ERS1021695 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27334 0.63662 0.17329 0.19742 0.9569 0.85845 0.51822 0.5123 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3368 3368 ERR1396866 ERX1468125 ERS1021694 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 118 1 1 SAMEA3714545 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 25 ZFS:0000031|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714545|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:07Z|INSDC status:public|Submitter Id:967f1000 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 118 clutch 1 collected at pharyngula prim 25 stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCAACATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:967f1000 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 6#1 15565751 Illumina sequencing of library 15565751 constructed from sample accession ERS1021694 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 6. This submission includes reads tagged with the sequence GCAACATT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_6#1.cram cram 1605096610.0 12346897.0 SC RUN 18685 6#1 0:55 1:75 A:437546175;C:284470740;G:289800048;T:592881366;N:398281 55 75     437546175 284470740 289800048 592881366 398281 ERX1468125 ERS1021694 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26356 0.62394 0.17383 0.19588 0.95645 0.85961 0.53258 0.52428 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Pharyngula Embryo Whole Organism All anatomical structures
3482 3482 ERR1891754 ERX1952252 ERS1447367 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A1 SAMEA4548188 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548188|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:06Z|INSDC status:public|Submitter Id:11a04170 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11a04170 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#41 18163305 Illumina sequencing of library 18163305 constructed from sample accession ERS1447367 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCCAGTCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#41.cram cram 1053208350.0 7021389.0 SC RUN 21524 6#41 0:75 1:75 A:273064335;C:251720289;G:251479176;T:276411004;N:533546 75 75     273064335 251720289 251479176 276411004 533546 ERX1952252 ERS1447367 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96386 0.96478 0.24504 0.24133 0.72701 0.7275 0.52668 0.52189 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3484 3484 ERR1891752 ERX1952250 ERS1447365 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A4 SAMEA4548186 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548186|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:04Z|INSDC status:public|Submitter Id:118ce080 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:118ce080 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#39 18163376 Illumina sequencing of library 18163376 constructed from sample accession ERS1447365 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCAGGAGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#39.cram cram 965104800.0 6434032.0 SC RUN 21524 6#39 0:75 1:75 A:258271729;C:222714835;G:222101694;T:261518420;N:498122 75 75     258271729 222714835 222101694 261518420 498122 ERX1952250 ERS1447365 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95999 0.96212 0.22571 0.22037 0.72478 0.7261 0.51159 0.51299 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3485 3485 ERR1891751 ERX1952249 ERS1447364 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A2 SAMEA4548185 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548185|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:02Z|INSDC status:public|Submitter Id:11845500 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11845500 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#38 18163364 Illumina sequencing of library 18163364 constructed from sample accession ERS1447364 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCTCACGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#38.cram cram 1034832600.0 6898884.0 SC RUN 21524 6#38 0:75 1:75 A:271755840;C:243696475;G:243836641;T:275016947;N:526697 75 75     271755840 243696475 243836641 275016947 526697 ERX1952249 ERS1447364 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95997 0.96252 0.26616 0.26195 0.72533 0.72821 0.52191 0.50589 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3490 3490 ERR1891746 ERX1952244 ERS1447359 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A7 SAMEA4548180 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548180|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:57Z|INSDC status:public|Submitter Id:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#33 18163304 Illumina sequencing of library 18163304 constructed from sample accession ERS1447359 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCGAAGTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#33.cram cram 1067551500.0 7117010.0 SC RUN 21524 6#33 0:75 1:75 A:284734823;C:247213384;G:246705741;T:288350406;N:547146 75 75     284734823 247213384 246705741 288350406 547146 ERX1952244 ERS1447359 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95813 0.95874 0.19835 0.19511 0.7147 0.71831 0.49605 0.49802 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3492 3492 ERR1891744 ERX1952242 ERS1447357 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A3 SAMEA4548178 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548178|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:55Z|INSDC status:public|Submitter Id:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#31 18163375 Illumina sequencing of library 18163375 constructed from sample accession ERS1447357 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TAGTCTTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#31.cram cram 1057660200.0 7051068.0 SC RUN 21524 6#31 0:75 1:75 A:277314292;C:249894948;G:249492542;T:280421824;N:536594 75 75     277314292 249894948 249492542 280421824 536594 ERX1952242 ERS1447357 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.9624 0.96375 0.16378 0.16088 0.71226 0.71346 0.48157 0.48564 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3495 3495 ERR1891741 ERX1952239 ERS1447354 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B1 SAMEA4548175 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548175|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:51Z|INSDC status:public|Submitter Id:1128c780 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1128c780 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#28 18163339 Illumina sequencing of library 18163339 constructed from sample accession ERS1447354 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TACAGGAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#28.cram cram 1050903150.0 7006021.0 SC RUN 21524 6#28 0:75 1:75 A:264540893;C:259420936;G:258940537;T:267461173;N:539611 75 75     264540893 259420936 258940537 267461173 539611 ERX1952239 ERS1447354 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96186 0.9635 0.18668 0.1843 0.71181 0.71476 0.52852 0.52288 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3499 3499 ERR1891737 ERX1952235 ERS1447350 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B9 SAMEA4548171 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548171|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:47Z|INSDC status:public|Submitter Id:11038c40 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11038c40 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#24 18163386 Illumina sequencing of library 18163386 constructed from sample accession ERS1447350 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#24.cram cram 1161395250.0 7742635.0 SC RUN 21524 6#24 0:75 1:75 A:303968563;C:274775223;G:274090799;T:307974877;N:585788 75 75     303968563 274775223 274090799 307974877 585788 ERX1952235 ERS1447350 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95859 0.96079 0.19784 0.19533 0.71928 0.72078 0.51248 0.51468 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3500 3500 ERR1891736 ERX1952234 ERS1447349 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B4 SAMEA4548170 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548170|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:46Z|INSDC status:public|Submitter Id:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#23 18163374 Illumina sequencing of library 18163374 constructed from sample accession ERS1447349 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#23.cram cram 995102100.0 6634014.0 SC RUN 21524 6#23 0:75 1:75 A:262015137;C:233845615;G:233461978;T:265270356;N:509014 75 75     262015137 233845615 233461978 265270356 509014 ERX1952234 ERS1447349 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95802 0.95983 0.24159 0.23958 0.71494 0.71727 0.50578 0.50847 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3502 3502 ERR1891734 ERX1952232 ERS1447347 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A5 SAMEA4548168 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548168|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:44Z|INSDC status:public|Submitter Id:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#21 18163350 Illumina sequencing of library 18163350 constructed from sample accession ERS1447347 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#21.cram cram 906724650.0 6044831.0 SC RUN 21524 6#21 0:75 1:75 A:239947078;C:211633599;G:211630541;T:243046903;N:466529 75 75     239947078 211633599 211630541 243046903 466529 ERX1952232 ERS1447347 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96192 0.96361 0.23797 0.23281 0.72456 0.72652 0.51349 0.51069 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3504 3504 ERR1891732 ERX1952230 ERS1447345 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B8 SAMEA4548166 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548166|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:42Z|INSDC status:public|Submitter Id:10da3250 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10da3250 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#19 18163326 Illumina sequencing of library 18163326 constructed from sample accession ERS1447345 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCTGCTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#19.cram cram 964050750.0 6427005.0 SC RUN 21524 6#19 0:75 1:75 A:256397479;C:223869169;G:223708458;T:259589648;N:485996 75 75     256397479 223869169 223708458 259589648 485996 ERX1952230 ERS1447345 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96068 0.96178 0.19949 0.19728 0.71784 0.719 0.50321 0.504 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3506 3506 ERR1891730 ERX1952228 ERS1447343 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B10 SAMEA4548164 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548164|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:39Z|INSDC status:public|Submitter Id:10c96970 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10c96970 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#17 18163302 Illumina sequencing of library 18163302 constructed from sample accession ERS1447343 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TGTACCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#17.cram cram 1047833400.0 6985556.0 SC RUN 21524 6#17 0:75 1:75 A:273442782;C:248719550;G:248346564;T:276790230;N:534274 75 75     273442782 248719550 248346564 276790230 534274 ERX1952228 ERS1447343 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96088 0.9631 0.16139 0.1588 0.70577 0.70688 0.4835 0.48719 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3509 3509 ERR1891727 ERX1952225 ERS1447340 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B3 SAMEA4548161 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548161|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:36Z|INSDC status:public|Submitter Id:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#14 18163361 Illumina sequencing of library 18163361 constructed from sample accession ERS1447340 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TCTCGGTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#14.cram cram 1008669750.0 6724465.0 SC RUN 21524 6#14 0:75 1:75 A:265688575;C:236941329;G:236581475;T:268948490;N:509881 75 75     265688575 236941329 236581475 268948490 509881 ERX1952225 ERS1447340 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95587 0.95859 0.22664 0.22496 0.7165 0.71739 0.49338 0.50076 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3513 3513 ERR1891723 ERX1952221 ERS1447336 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A6 SAMEA4548157 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548157|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:32Z|INSDC status:public|Submitter Id:108e8350 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:108e8350 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#10 18163313 Illumina sequencing of library 18163313 constructed from sample accession ERS1447336 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence TAGCTTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#10.cram cram 939753150.0 6265021.0 SC RUN 21524 6#10 0:75 1:75 A:251242791;C:216798668;G:215823687;T:255412232;N:475772 75 75     251242791 216798668 215823687 255412232 475772 ERX1952221 ERS1447336 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95971 0.96163 0.23071 0.22475 0.72305 0.72575 0.50844 0.51229 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3514 3514 ERR1891722 ERX1952220 ERS1447335 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B5 SAMEA4548156 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548156|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:31Z|INSDC status:public|Submitter Id:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#9 18163301 Illumina sequencing of library 18163301 constructed from sample accession ERS1447335 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence GATCAGCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#9.cram cram 1046581500.0 6977210.0 SC RUN 21524 6#9 0:75 1:75 A:274825793;C:246921969;G:246134742;T:278164800;N:534196 75 75     274825793 246921969 246134742 278164800 534196 ERX1952220 ERS1447335 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95643 0.95738 0.23604 0.23438 0.72028 0.72228 0.52588 0.5248 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3516 3516 ERR1891720 ERX1952218 ERS1447333 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B7 SAMEA4548154 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548154|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:28Z|INSDC status:public|Submitter Id:10738140 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10738140 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#7 18163372 Illumina sequencing of library 18163372 constructed from sample accession ERS1447333 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence CAGATCTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#7.cram cram 1031714100.0 6878094.0 SC RUN 21524 6#7 0:75 1:75 A:273444798;C:240757396;G:240130002;T:276855554;N:526350 75 75     273444798 240757396 240130002 276855554 526350 ERX1952218 ERS1447333 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95564 0.95842 0.24058 0.23777 0.71926 0.72011 0.5163 0.50927 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3517 3517 ERR1891719 ERX1952217 ERS1447332 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B6 SAMEA4548153 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548153|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:27Z|INSDC status:public|Submitter Id:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#6 18163360 Illumina sequencing of library 18163360 constructed from sample accession ERS1447332 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence GCCAATGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#6.cram cram 1049059800.0 6993732.0 SC RUN 21524 6#6 0:75 1:75 A:275863170;C:247154333;G:246539707;T:278964587;N:538003 75 75     275863170 247154333 246539707 278964587 538003 ERX1952217 ERS1447332 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96121 0.96299 0.19916 0.19651 0.71567 0.71845 0.50287 0.50221 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3518 3518 ERR1891718 ERX1952216 ERS1447331 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B12 SAMEA4548152 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548152|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:26Z|INSDC status:public|Submitter Id:10629150 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10629150 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#5 18163348 Illumina sequencing of library 18163348 constructed from sample accession ERS1447331 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence ACAGTGGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#5.cram cram 1019197050.0 6794647.0 SC RUN 21524 6#5 0:75 1:75 A:272049830;C:235741763;G:235233062;T:275638932;N:533463 75 75     272049830 235741763 235233062 275638932 533463 ERX1952216 ERS1447331 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95582 0.95693 0.24153 0.23671 0.71486 0.71855 0.51643 0.49469 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3521 3521 ERR1891715 ERX1952213 ERS1447328 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B11 SAMEA4548149 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548149|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:22Z|INSDC status:public|Submitter Id:10336b00 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10336b00 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 6#2 18163312 Illumina sequencing of library 18163312 constructed from sample accession ERS1447328 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 6. This submission includes reads tagged with the sequence CGATGTTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_6#2.cram cram 1020139950.0 6800933.0 SC RUN 21524 6#2 0:75 1:75 A:267041750;C:241548794;G:240639201;T:270392660;N:517545 75 75     267041750 241548794 240639201 270392660 517545 ERX1952213 ERS1447328 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95757 0.95896 0.22608 0.22271 0.71555 0.71735 0.51965 0.52139 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3524 3524 ERR1891712 ERX1952210 ERS1447367 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A1 SAMEA4548188 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548188|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:06Z|INSDC status:public|Submitter Id:11a04170 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11a04170 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#41 18163305 Illumina sequencing of library 18163305 constructed from sample accession ERS1447367 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCCAGTCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#41.cram cram 1050617700.0 7004118.0 SC RUN 21524 5#41 0:75 1:75 A:272257910;C:251267991;G:250958203;T:275686455;N:447141 75 75     272257910 251267991 250958203 275686455 447141 ERX1952210 ERS1447367 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96382 0.96493 0.24436 0.24053 0.7263 0.72815 0.52356 0.51833 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3526 3526 ERR1891710 ERX1952208 ERS1447365 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A4 SAMEA4548186 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548186|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:04Z|INSDC status:public|Submitter Id:118ce080 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:118ce080 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#39 18163376 Illumina sequencing of library 18163376 constructed from sample accession ERS1447365 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCAGGAGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#39.cram cram 962235150.0 6414901.0 SC RUN 21524 5#39 0:75 1:75 A:257427104;C:222176946;G:221547391;T:260674164;N:409545 75 75     257427104 222176946 221547391 260674164 409545 ERX1952208 ERS1447365 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95997 0.96244 0.22624 0.22163 0.72405 0.72504 0.51172 0.51138 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3527 3527 ERR1891709 ERX1952207 ERS1447364 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A2 SAMEA4548185 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548185|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:02Z|INSDC status:public|Submitter Id:11845500 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11845500 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#38 18163364 Illumina sequencing of library 18163364 constructed from sample accession ERS1447364 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCTCACGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#38.cram cram 1031617500.0 6877450.0 SC RUN 21524 5#38 0:75 1:75 A:270768612;C:243070386;G:243198219;T:274137651;N:442632 75 75     270768612 243070386 243198219 274137651 442632 ERX1952207 ERS1447364 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96018 0.96162 0.26706 0.26338 0.72429 0.72563 0.52362 0.51861 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3532 3532 ERR1891704 ERX1952202 ERS1447359 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A7 SAMEA4548180 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548180|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:57Z|INSDC status:public|Submitter Id:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#33 18163304 Illumina sequencing of library 18163304 constructed from sample accession ERS1447359 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCGAAGTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#33.cram cram 1064658750.0 7097725.0 SC RUN 21524 5#33 0:75 1:75 A:283825440;C:246676247;G:246177651;T:287518245;N:461167 75 75     283825440 246676247 246177651 287518245 461167 ERX1952202 ERS1447359 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95836 0.96048 0.19643 0.19325 0.71323 0.71518 0.49781 0.49801 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3534 3534 ERR1891702 ERX1952200 ERS1447357 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A3 SAMEA4548178 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548178|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:55Z|INSDC status:public|Submitter Id:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#31 18163375 Illumina sequencing of library 18163375 constructed from sample accession ERS1447357 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TAGTCTTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#31.cram cram 1053995250.0 7026635.0 SC RUN 21524 5#31 0:75 1:75 A:276269426;C:249171078;G:248721469;T:279383418;N:449859 75 75     276269426 249171078 248721469 279383418 449859 ERX1952200 ERS1447357 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.9622 0.96438 0.1638 0.16268 0.7105 0.71216 0.48289 0.47867 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3537 3537 ERR1891699 ERX1952197 ERS1447354 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B1 SAMEA4548175 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548175|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:51Z|INSDC status:public|Submitter Id:1128c780 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1128c780 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#28 18163339 Illumina sequencing of library 18163339 constructed from sample accession ERS1447354 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TACAGGAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#28.cram cram 1047540450.0 6983603.0 SC RUN 21524 5#28 0:75 1:75 A:263626919;C:258708441;G:258217231;T:266539046;N:448813 75 75     263626919 258708441 258217231 266539046 448813 ERX1952197 ERS1447354 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96228 0.96311 0.18748 0.18249 0.71388 0.71549 0.52857 0.52738 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3541 3541 ERR1891695 ERX1952193 ERS1447350 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B9 SAMEA4548171 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548171|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:47Z|INSDC status:public|Submitter Id:11038c40 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11038c40 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#24 18163386 Illumina sequencing of library 18163386 constructed from sample accession ERS1447350 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#24.cram cram 1158593700.0 7723958.0 SC RUN 21524 5#24 0:75 1:75 A:303130748;C:274282285;G:273509506;T:307182237;N:488924 75 75     303130748 274282285 273509506 307182237 488924 ERX1952193 ERS1447350 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95975 0.9604 0.19988 0.19703 0.7192 0.72117 0.51528 0.50797 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3542 3542 ERR1891694 ERX1952192 ERS1447349 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B4 SAMEA4548170 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548170|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:46Z|INSDC status:public|Submitter Id:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#23 18163374 Illumina sequencing of library 18163374 constructed from sample accession ERS1447349 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#23.cram cram 991552800.0 6610352.0 SC RUN 21524 5#23 0:75 1:75 A:260985857;C:233131198;G:232754590;T:264257398;N:423757 75 75     260985857 233131198 232754590 264257398 423757 ERX1952192 ERS1447349 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95942 0.96093 0.24366 0.23957 0.71593 0.71715 0.50567 0.50985 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3544 3544 ERR1891692 ERX1952190 ERS1447347 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A5 SAMEA4548168 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548168|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:44Z|INSDC status:public|Submitter Id:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#21 18163350 Illumina sequencing of library 18163350 constructed from sample accession ERS1447347 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#21.cram cram 903290550.0 6021937.0 SC RUN 21524 5#21 0:75 1:75 A:238903968;C:210974584;G:210960225;T:242066006;N:385767 75 75     238903968 210974584 210960225 242066006 385767 ERX1952190 ERS1447347 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96234 0.9636 0.24053 0.23496 0.72405 0.72533 0.50569 0.51027 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3546 3546 ERR1891690 ERX1952188 ERS1447345 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B8 SAMEA4548166 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548166|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:42Z|INSDC status:public|Submitter Id:10da3250 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10da3250 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#19 18163326 Illumina sequencing of library 18163326 constructed from sample accession ERS1447345 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCTGCTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#19.cram cram 961390650.0 6409271.0 SC RUN 21524 5#19 0:75 1:75 A:255580539;C:223383800;G:223171474;T:258851246;N:403591 75 75     255580539 223383800 223171474 258851246 403591 ERX1952188 ERS1447345 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95931 0.96276 0.19931 0.19695 0.71881 0.72028 0.50353 0.50223 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3548 3548 ERR1891688 ERX1952186 ERS1447343 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B10 SAMEA4548164 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548164|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:39Z|INSDC status:public|Submitter Id:10c96970 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10c96970 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#17 18163302 Illumina sequencing of library 18163302 constructed from sample accession ERS1447343 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TGTACCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#17.cram cram 1045260750.0 6968405.0 SC RUN 21524 5#17 0:75 1:75 A:272677568;C:248196368;G:247854053;T:276094988;N:437773 75 75     272677568 248196368 247854053 276094988 437773 ERX1952186 ERS1447343 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96119 0.96389 0.1615 0.16006 0.70565 0.70737 0.48734 0.48839 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3551 3551 ERR1891685 ERX1952183 ERS1447340 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B3 SAMEA4548161 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548161|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:36Z|INSDC status:public|Submitter Id:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#14 18163361 Illumina sequencing of library 18163361 constructed from sample accession ERS1447340 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TCTCGGTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#14.cram cram 1005464550.0 6703097.0 SC RUN 21524 5#14 0:75 1:75 A:264698325;C:236367853;G:235942715;T:268030451;N:425206 75 75     264698325 236367853 235942715 268030451 425206 ERX1952183 ERS1447340 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95627 0.95752 0.22803 0.2245 0.71559 0.71668 0.49986 0.5024 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3555 3555 ERR1891681 ERX1952179 ERS1447336 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A6 SAMEA4548157 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548157|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:32Z|INSDC status:public|Submitter Id:108e8350 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:108e8350 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#10 18163313 Illumina sequencing of library 18163313 constructed from sample accession ERS1447336 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence TAGCTTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#10.cram cram 936985350.0 6246569.0 SC RUN 21524 5#10 0:75 1:75 A:250391276;C:216308102;G:215329573;T:254554876;N:401523 75 75     250391276 216308102 215329573 254554876 401523 ERX1952179 ERS1447336 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95951 0.96116 0.2292 0.22295 0.72454 0.7259 0.4998 0.50889 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3556 3556 ERR1891680 ERX1952178 ERS1447335 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B5 SAMEA4548156 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548156|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:31Z|INSDC status:public|Submitter Id:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#9 18163301 Illumina sequencing of library 18163301 constructed from sample accession ERS1447335 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence GATCAGCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#9.cram cram 1044221400.0 6961476.0 SC RUN 21524 5#9 0:75 1:75 A:274110070;C:246562952;G:245681688;T:277419662;N:447028 75 75     274110070 246562952 245681688 277419662 447028 ERX1952178 ERS1447335 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95591 0.95714 0.23575 0.23353 0.72103 0.72295 0.52583 0.52304 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3558 3558 ERR1891678 ERX1952176 ERS1447333 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B7 SAMEA4548154 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548154|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:28Z|INSDC status:public|Submitter Id:10738140 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10738140 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#7 18163372 Illumina sequencing of library 18163372 constructed from sample accession ERS1447333 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence CAGATCTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#7.cram cram 1027814400.0 6852096.0 SC RUN 21524 5#7 0:75 1:75 A:272362031;C:239928576;G:239268000;T:275821817;N:433976 75 75     272362031 239928576 239268000 275821817 433976 ERX1952176 ERS1447333 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95665 0.95764 0.24235 0.23805 0.71904 0.7203 0.50895 0.5115 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3559 3559 ERR1891677 ERX1952175 ERS1447332 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B6 SAMEA4548153 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548153|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:27Z|INSDC status:public|Submitter Id:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#6 18163360 Illumina sequencing of library 18163360 constructed from sample accession ERS1447332 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence GCCAATGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#6.cram cram 1046580900.0 6977206.0 SC RUN 21524 5#6 0:75 1:75 A:275113657;C:246713793;G:246050247;T:278259937;N:443266 75 75     275113657 246713793 246050247 278259937 443266 ERX1952175 ERS1447332 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96152 0.96349 0.19936 0.19549 0.71467 0.71735 0.49913 0.49928 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3560 3560 ERR1891676 ERX1952174 ERS1447331 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B12 SAMEA4548152 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548152|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:26Z|INSDC status:public|Submitter Id:10629150 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10629150 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#5 18163348 Illumina sequencing of library 18163348 constructed from sample accession ERS1447331 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence ACAGTGGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#5.cram cram 1017183750.0 6781225.0 SC RUN 21524 5#5 0:75 1:75 A:271391558;C:235388071;G:234873826;T:275081202;N:449093 75 75     271391558 235388071 234873826 275081202 449093 ERX1952174 ERS1447331 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95516 0.95714 0.23917 0.23713 0.71212 0.71441 0.51069 0.4967 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3563 3563 ERR1891673 ERX1952171 ERS1447328 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B11 SAMEA4548149 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548149|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:22Z|INSDC status:public|Submitter Id:10336b00 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10336b00 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 5#2 18163312 Illumina sequencing of library 18163312 constructed from sample accession ERS1447328 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 5. This submission includes reads tagged with the sequence CGATGTTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_5#2.cram cram 1015675350.0 6771169.0 SC RUN 21524 5#2 0:75 1:75 A:265748009;C:240668336;G:239722510;T:269099483;N:437012 75 75     265748009 240668336 239722510 269099483 437012 ERX1952171 ERS1447328 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95765 0.9595 0.22542 0.22253 0.71831 0.7191 0.52011 0.52769 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3566 3566 ERR1891670 ERX1952168 ERS1447367 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A1 SAMEA4548188 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548188|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:06Z|INSDC status:public|Submitter Id:11a04170 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11a04170 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#41 18163305 Illumina sequencing of library 18163305 constructed from sample accession ERS1447367 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCCAGTCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#41.cram cram 1048174950.0 6987833.0 SC RUN 21524 4#41 0:75 1:75 A:271613772;C:250682109;G:250407134;T:274972062;N:499873 75 75     271613772 250682109 250407134 274972062 499873 ERX1952168 ERS1447367 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.963 0.96571 0.24635 0.24219 0.72594 0.72805 0.52351 0.52022 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3568 3568 ERR1891668 ERX1952166 ERS1447365 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A4 SAMEA4548186 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548186|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:04Z|INSDC status:public|Submitter Id:118ce080 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:118ce080 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#39 18163376 Illumina sequencing of library 18163376 constructed from sample accession ERS1447365 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCAGGAGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#39.cram cram 960091050.0 6400607.0 SC RUN 21524 4#39 0:75 1:75 A:256749972;C:221758885;G:221111816;T:260003904;N:466473 75 75     256749972 221758885 221111816 260003904 466473 ERX1952166 ERS1447365 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96058 0.96287 0.22386 0.22005 0.72423 0.72624 0.51394 0.51298 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3569 3569 ERR1891667 ERX1952165 ERS1447364 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A2 SAMEA4548185 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548185|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:37:02Z|INSDC status:public|Submitter Id:11845500 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11845500 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#38 18163364 Illumina sequencing of library 18163364 constructed from sample accession ERS1447364 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCTCACGG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#38.cram cram 1028402550.0 6856017.0 SC RUN 21524 4#38 0:75 1:75 A:269904931;C:242340220;G:242452343;T:273204885;N:500171 75 75     269904931 242340220 242452343 273204885 500171 ERX1952165 ERS1447364 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96074 0.96223 0.2679 0.26419 0.72354 0.72652 0.52183 0.52156 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3574 3574 ERR1891662 ERX1952160 ERS1447359 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A7 SAMEA4548180 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548180|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:57Z|INSDC status:public|Submitter Id:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:115a85e0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#33 18163304 Illumina sequencing of library 18163304 constructed from sample accession ERS1447359 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCGAAGTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#33.cram cram 1064014350.0 7093429.0 SC RUN 21524 4#33 0:75 1:75 A:283613862;C:246552933;G:246079074;T:287250011;N:518470 75 75     283613862 246552933 246079074 287250011 518470 ERX1952160 ERS1447359 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95827 0.9619 0.19603 0.19378 0.71636 0.71762 0.4988 0.49648 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3576 3576 ERR1891660 ERX1952158 ERS1447357 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A3 SAMEA4548178 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548178|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:55Z|INSDC status:public|Submitter Id:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1141a6b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#31 18163375 Illumina sequencing of library 18163375 constructed from sample accession ERS1447357 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TAGTCTTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#31.cram cram 1052946150.0 7019641.0 SC RUN 21524 4#31 0:75 1:75 A:275971385;C:248890030;G:248510716;T:279068786;N:505233 75 75     275971385 248890030 248510716 279068786 505233 ERX1952158 ERS1447357 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96209 0.96503 0.16445 0.16152 0.71196 0.71362 0.48039 0.48402 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3579 3579 ERR1891657 ERX1952155 ERS1447354 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B1 SAMEA4548175 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548175|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:51Z|INSDC status:public|Submitter Id:1128c780 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1128c780 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#28 18163339 Illumina sequencing of library 18163339 constructed from sample accession ERS1447354 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TACAGGAT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#28.cram cram 1046687850.0 6977919.0 SC RUN 21524 4#28 0:75 1:75 A:263317995;C:258596057;G:258076774;T:266185204;N:511820 75 75     263317995 258596057 258076774 266185204 511820 ERX1952155 ERS1447354 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96274 0.96462 0.1871 0.18453 0.71074 0.71323 0.52949 0.52596 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3583 3583 ERR1891653 ERX1952151 ERS1447350 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B9 SAMEA4548171 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548171|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:47Z|INSDC status:public|Submitter Id:11038c40 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:11038c40 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#24 18163386 Illumina sequencing of library 18163386 constructed from sample accession ERS1447350 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#24.cram cram 1156715700.0 7711438.0 SC RUN 21524 4#24 0:75 1:75 A:302530694;C:273875813;G:273155948;T:306594295;N:558950 75 75     302530694 273875813 273155948 306594295 558950 ERX1952151 ERS1447350 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95971 0.96188 0.19907 0.19552 0.71892 0.71997 0.51163 0.50341 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3584 3584 ERR1891652 ERX1952150 ERS1447349 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B4 SAMEA4548170 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548170|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:46Z|INSDC status:public|Submitter Id:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10fb4ee0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#23 18163374 Illumina sequencing of library 18163374 constructed from sample accession ERS1447349 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#23.cram cram 991391550.0 6609277.0 SC RUN 21524 4#23 0:75 1:75 A:260902301;C:233120139;G:232760161;T:264128607;N:480342 75 75     260902301 233120139 232760161 264128607 480342 ERX1952150 ERS1447349 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95927 0.96179 0.24373 0.24128 0.71545 0.71762 0.50974 0.50678 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3586 3586 ERR1891650 ERX1952148 ERS1447347 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A5 SAMEA4548168 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548168|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:44Z|INSDC status:public|Submitter Id:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10eaad10 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#21 18163350 Illumina sequencing of library 18163350 constructed from sample accession ERS1447347 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#21.cram cram 902204850.0 6014699.0 SC RUN 21524 4#21 0:75 1:75 A:238640463;C:210698884;G:210695699;T:241735965;N:433839 75 75     238640463 210698884 210695699 241735965 433839 ERX1952148 ERS1447347 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96174 0.96428 0.23871 0.23368 0.72253 0.72368 0.5054 0.50771 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3588 3588 ERR1891648 ERX1952146 ERS1447345 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B8 SAMEA4548166 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548166|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:42Z|INSDC status:public|Submitter Id:10da3250 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10da3250 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#19 18163326 Illumina sequencing of library 18163326 constructed from sample accession ERS1447345 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCTGCTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#19.cram cram 959726100.0 6398174.0 SC RUN 21524 4#19 0:75 1:75 A:255158770;C:222984823;G:222814347;T:258303995;N:464165 75 75     255158770 222984823 222814347 258303995 464165 ERX1952146 ERS1447345 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95933 0.96271 0.19966 0.19587 0.71555 0.71774 0.50285 0.50555 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3590 3590 ERR1891646 ERX1952144 ERS1447343 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B10 SAMEA4548164 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548164|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:39Z|INSDC status:public|Submitter Id:10c96970 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10c96970 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#17 18163302 Illumina sequencing of library 18163302 constructed from sample accession ERS1447343 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TGTACCTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#17.cram cram 1043712000.0 6958080.0 SC RUN 21524 4#17 0:75 1:75 A:272253559;C:247873926;G:247511763;T:275567108;N:505644 75 75     272253559 247873926 247511763 275567108 505644 ERX1952144 ERS1447343 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96089 0.96442 0.16184 0.16087 0.70638 0.7077 0.48351 0.48568 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3593 3593 ERR1891643 ERX1952141 ERS1447340 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B3 SAMEA4548161 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548161|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:36Z|INSDC status:public|Submitter Id:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10afc6f0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#14 18163361 Illumina sequencing of library 18163361 constructed from sample accession ERS1447340 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TCTCGGTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#14.cram cram 1003647600.0 6690984.0 SC RUN 21524 4#14 0:75 1:75 A:264185800;C:235953833;G:235535534;T:267496379;N:476054 75 75     264185800 235953833 235535534 267496379 476054 ERX1952141 ERS1447340 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95642 0.95921 0.22895 0.22641 0.71559 0.71756 0.49766 0.50886 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3597 3597 ERR1891639 ERX1952137 ERS1447336 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 A6 SAMEA4548157 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548157|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:32Z|INSDC status:public|Submitter Id:108e8350 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish transgenic actin:prl3:cmlc:gfp embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:108e8350 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#10 18163313 Illumina sequencing of library 18163313 constructed from sample accession ERS1447336 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence TAGCTTGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#10.cram cram 935529450.0 6236863.0 SC RUN 21524 4#10 0:75 1:75 A:250001427;C:215913367;G:215025289;T:254140451;N:448916 75 75     250001427 215913367 215025289 254140451 448916 ERX1952137 ERS1447336 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.96042 0.9632 0.22889 0.22457 0.72277 0.72498 0.50798 0.5084 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3598 3598 ERR1891638 ERX1952136 ERS1447335 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B5 SAMEA4548156 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548156|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:31Z|INSDC status:public|Submitter Id:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:1085a9b0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#9 18163301 Illumina sequencing of library 18163301 constructed from sample accession ERS1447335 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence GATCAGCG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#9.cram cram 1043422050.0 6956147.0 SC RUN 21524 4#9 0:75 1:75 A:273914715;C:246317179;G:245513168;T:277170346;N:506642 75 75     273914715 246317179 245513168 277170346 506642 ERX1952136 ERS1447335 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95615 0.9589 0.23726 0.2342 0.71853 0.72163 0.52798 0.52169 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3600 3600 ERR1891636 ERX1952134 ERS1447333 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B7 SAMEA4548154 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548154|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:28Z|INSDC status:public|Submitter Id:10738140 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10738140 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#7 18163372 Illumina sequencing of library 18163372 constructed from sample accession ERS1447333 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence CAGATCTG. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#7.cram cram 1026341700.0 6842278.0 SC RUN 21524 4#7 0:75 1:75 A:271980118;C:239614984;G:238910980;T:275344895;N:490723 75 75     271980118 239614984 238910980 275344895 490723 ERX1952134 ERS1447333 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.9562 0.95839 0.24274 0.23977 0.71902 0.72101 0.50932 0.51757 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3601 3601 ERR1891635 ERX1952133 ERS1447332 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B6 SAMEA4548153 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548153|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:27Z|INSDC status:public|Submitter Id:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:106b1cd0 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#6 18163360 Illumina sequencing of library 18163360 constructed from sample accession ERS1447332 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence GCCAATGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#6.cram cram 1045788000.0 6971920.0 SC RUN 21524 4#6 0:75 1:75 A:274870539;C:246534108;G:245912184;T:277964730;N:506439 75 75     274870539 246534108 245912184 277964730 506439 ERX1952133 ERS1447332 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.9613 0.96377 0.1988 0.1969 0.71508 0.71679 0.50442 0.5039 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3602 3602 ERR1891634 ERX1952132 ERS1447331 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B12 SAMEA4548152 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548152|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:26Z|INSDC status:public|Submitter Id:10629150 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10629150 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#5 18163348 Illumina sequencing of library 18163348 constructed from sample accession ERS1447331 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence ACAGTGGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#5.cram cram 1016900850.0 6779339.0 SC RUN 21524 4#5 0:75 1:75 A:271342589;C:235335868;G:234819042;T:274902202;N:501149 75 75     271342589 235335868 234819042 274902202 501149 ERX1952132 ERS1447331 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.95573 0.95791 0.24046 0.23719 0.71518 0.71703 0.51228 0.50652 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3605 3605 ERR1891631 ERX1952129 ERS1447328 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     zmp ph269 B11 SAMEA4548149 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:ZFS:0000031 Pharyngula : Prim 25|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2017 03 21|ENA last update:2016 11 15|External Id:SAMEA4548149|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2017 03 21T09:07:36Z|INSDC last update:2016 11 15T13:36:22Z|INSDC status:public|Submitter Id:10336b00 a299 11e6 8d8d 3c4a9275d6c8|common name:zebrafish|sample description:Total RNA from a single zebrafish non transgenic actin:prl3:cmlc:gfp sibling embryo at 36hpf plus ERCC spike mix 1 Ambion. The sample has been DNAse treated.|sample name:10336b00 a299 11e6 8d8d 3c4a9275d6c8|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 21524 4#2 18163312 Illumina sequencing of library 18163312 constructed from sample accession ERS1447328 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 21524 4. This submission includes reads tagged with the sequence CGATGTTT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013837 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2017 03 24|ENA LAST UPDATE:2018 11 16 21524_4#2.cram cram 1016125650.0 6774171.0 SC RUN 21524 4#2 0:75 1:75 A:265811040;C:240817986;G:239885127;T:269117251;N:494246 75 75     265811040 240817986 239885127 269117251 494246 ERX1952129 ERS1447328 ERA854063 European Nucleotide Archive Wellcome Sanger Institute 2 0.958 0.96017 0.22651 0.22405 0.7167 0.71946 0.51897 0.52975 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-11-15 Pharyngula Embryo Whole Organism All anatomical structures
3607 3607 ERR1416200 ERX1486984 ERS1023437 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 12 SAMEA3716288 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716288|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:17Z|INSDC status:public|Submitter Id:b6e07720 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTCTTGGC is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6e07720 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#96 15658908 Illumina sequencing of library 15658908 constructed from sample accession ERS1023437 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GTCTTGGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#96.cram cram 208984620.0 1607574.0 SC RUN 18834 2#96 0:55 1:75 A:57454275;C:39438097;G:41967450;T:69819648;N:305150 55 75     57454275 39438097 41967450 69819648 305150 ERX1486984 ERS1023437 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.22213 0.70057 0.15198 0.1898 0.95582 0.84538 0.59841 0.53732 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3608 3608 ERR1416199 ERX1486983 ERS1023436 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 11 SAMEA3716287 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716287|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:16Z|INSDC status:public|Submitter Id:b6d97240 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATTCATC is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6d97240 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#95 15658907 Illumina sequencing of library 15658907 constructed from sample accession ERS1023436 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GATTCATC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#95.cram cram 234647010.0 1804977.0 SC RUN 18834 2#95 0:55 1:75 A:63539883;C:42016679;G:45347634;T:83383773;N:359041 55 75     63539883 42016679 45347634 83383773 359041 ERX1486983 ERS1023436 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.21251 0.7452 0.13342 0.18654 0.95404 0.83305 0.71252 0.43596 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3609 3609 ERR1416198 ERX1486982 ERS1023435 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 10 SAMEA3716286 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716286|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:16Z|INSDC status:public|Submitter Id:b6d29470 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTAACTC is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6d29470 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#94 15658906 Illumina sequencing of library 15658906 constructed from sample accession ERS1023435 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GCTAACTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#94.cram cram 248166100.0 1908970.0 SC RUN 18834 2#94 0:55 1:75 A:66597614;C:44112087;G:48562263;T:88528868;N:365268 55 75     66597614 44112087 48562263 88528868 365268 ERX1486982 ERS1023435 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.20687 0.7653 0.1126 0.17384 0.95603 0.83495 0.77814 0.57694 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3610 3610 ERR1416197 ERX1486981 ERS1023434 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 9 SAMEA3716285 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716285|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:15Z|INSDC status:public|Submitter Id:b6cb8f90 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCACTGTC is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6cb8f90 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#93 15658905 Illumina sequencing of library 15658905 constructed from sample accession ERS1023434 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GCACTGTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#93.cram cram 220766260.0 1698202.0 SC RUN 18834 2#93 0:55 1:75 A:60057325;C:39489367;G:42833910;T:78058319;N:327339 55 75     60057325 39489367 42833910 78058319 327339 ERX1486981 ERS1023434 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.20927 0.7324 0.14235 0.17257 0.95513 0.8339 0.65231 0.52103 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3611 3611 ERR1416196 ERX1486980 ERS1023433 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 8 SAMEA3716284 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716284|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:15Z|INSDC status:public|Submitter Id:b6c48ab0 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCTGTTC is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6c48ab0 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#92 15658904 Illumina sequencing of library 15658904 constructed from sample accession ERS1023433 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GCCTGTTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#92.cram cram 247362050.0 1902785.0 SC RUN 18834 2#92 0:55 1:75 A:66185877;C:45965906;G:49589112;T:85248860;N:372295 55 75     66185877 45965906 49589112 85248860 372295 ERX1486980 ERS1023433 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.19906 0.75836 0.12479 0.1886 0.95412 0.837 0.72027 0.5427 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3612 3612 ERR1416195 ERX1486979 ERS1023432 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 7 SAMEA3716283 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716283|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:14Z|INSDC status:public|Submitter Id:b6bd85d0 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GACCTTAG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6bd85d0 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#91 15658903 Illumina sequencing of library 15658903 constructed from sample accession ERS1023432 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GACCTTAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#91.cram cram 232275290.0 1786733.0 SC RUN 18834 2#91 0:55 1:75 A:62109761;C:41758011;G:44574055;T:83489739;N:343724 55 75     62109761 41758011 44574055 83489739 343724 ERX1486979 ERS1023432 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.21908 0.76103 0.14184 0.20421 0.95134 0.8298 0.68129 0.52074 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3613 3613 ERR1416194 ERX1486978 ERS1023431 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 6 SAMEA3716282 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716282|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:14Z|INSDC status:public|Submitter Id:b6b6a800 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCAATCCG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6b6a800 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#90 15658902 Illumina sequencing of library 15658902 constructed from sample accession ERS1023431 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GCAATCCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#90.cram cram 238686500.0 1836050.0 SC RUN 18834 2#90 0:55 1:75 A:64491034;C:43229553;G:46719049;T:83894045;N:352819 55 75     64491034 43229553 46719049 83894045 352819 ERX1486978 ERS1023431 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.20935 0.73643 0.13734 0.20152 0.95355 0.83443 0.70363 0.55661 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3614 3614 ERR1416193 ERX1486977 ERS1023430 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 5 SAMEA3716281 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716281|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:14Z|INSDC status:public|Submitter Id:b6afa320 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTGTGTCG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6afa320 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#89 15658901 Illumina sequencing of library 15658901 constructed from sample accession ERS1023430 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GTGTGTCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#89.cram cram 234005850.0 1800045.0 SC RUN 18834 2#89 0:55 1:75 A:64955396;C:42123789;G:43556737;T:83016272;N:353656 55 75     64955396 42123789 43556737 83016272 353656 ERX1486977 ERS1023430 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.23139 0.74523 0.1533 0.19706 0.95067 0.83445 0.68216 0.53574 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3615 3615 ERR1416192 ERX1486976 ERS1023429 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 4 SAMEA3716280 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716280|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:13Z|INSDC status:public|Submitter Id:b6a89e40 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATAGAGG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6a89e40 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#88 15658900 Illumina sequencing of library 15658900 constructed from sample accession ERS1023429 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GATAGAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#88.cram cram 218438740.0 1680298.0 SC RUN 18834 2#88 0:55 1:75 A:59293430;C:39853658;G:40774958;T:78195862;N:320832 55 75     59293430 39853658 40774958 78195862 320832 ERX1486976 ERS1023429 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.23563 0.72992 0.16686 0.19534 0.95599 0.83751 0.6262 0.51066 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3616 3616 ERR1416191 ERX1486975 ERS1023428 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 3 SAMEA3716279 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716279|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:13Z|INSDC status:public|Submitter Id:b6a19960 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGATTAGG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6a19960 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#87 15658899 Illumina sequencing of library 15658899 constructed from sample accession ERS1023428 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GGATTAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#87.cram cram 221546650.0 1704205.0 SC RUN 18834 2#87 0:55 1:75 A:60547795;C:40686266;G:40728989;T:79248923;N:334677 55 75     60547795 40686266 40728989 79248923 334677 ERX1486975 ERS1023428 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.21949 0.73362 0.14697 0.20947 0.95262 0.83315 0.55124 0.54283 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3617 3617 ERR1416190 ERX1486974 ERS1023427 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 2 SAMEA3716278 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716278|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:12Z|INSDC status:public|Submitter Id:b69a9480 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTTGTCGG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b69a9480 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#86 15658898 Illumina sequencing of library 15658898 constructed from sample accession ERS1023427 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GTTGTCGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#86.cram cram 235324180.0 1810186.0 SC RUN 18834 2#86 0:55 1:75 A:63837881;C:44290550;G:46024231;T:80814391;N:357127 55 75     63837881 44290550 46024231 80814391 357127 ERX1486974 ERS1023427 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.22414 0.75026 0.15018 0.22676 0.95112 0.83867 0.70005 0.55162 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3618 3618 ERR1416189 ERX1486973 ERS1023426 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 non phenotypic 1 SAMEA3716277 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716277|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:12Z|INSDC status:public|Submitter Id:b6938fa0 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGGATGG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6938fa0 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#85 15658897 Illumina sequencing of library 15658897 constructed from sample accession ERS1023426 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GAGGATGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#85.cram cram 188279390.0 1448303.0 SC RUN 18834 2#85 0:55 1:75 A:51408878;C:35606419;G:35642468;T:65349448;N:272177 55 75     51408878 35606419 35642468 65349448 272177 ERX1486973 ERS1023426 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.22872 0.70536 0.1677 0.22485 0.95651 0.84664 0.63838 0.44423 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3619 3619 ERR1416188 ERX1486972 ERS1023425 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 phenotypic 12 SAMEA3716276 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716276|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:11Z|INSDC status:public|Submitter Id:b68c8ac0 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GTAAGGTG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b68c8ac0 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#84 15658896 Illumina sequencing of library 15658896 constructed from sample accession ERS1023425 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GTAAGGTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#84.cram cram 207421500.0 1595550.0 SC RUN 18834 2#84 0:55 1:75 A:56641866;C:37672000;G:38522362;T:74281439;N:303833 55 75     56641866 37672000 38522362 74281439 303833 ERX1486972 ERS1023425 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.23075 0.72922 0.15844 0.1842 0.95258 0.83757 0.64677 0.50108 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3620 3620 ERR1416187 ERX1486971 ERS1023424 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 phenotypic 11 SAMEA3716275 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716275|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:11Z|INSDC status:public|Submitter Id:b685acf0 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCTCCTTG is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b685acf0 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#83 15658895 Illumina sequencing of library 15658895 constructed from sample accession ERS1023424 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GCTCCTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#83.cram cram 250501420.0 1926934.0 SC RUN 18834 2#83 0:55 1:75 A:67765569;C:45221867;G:52019630;T:85117561;N:376793 55 75     67765569 45221867 52019630 85117561 376793 ERX1486971 ERS1023424 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.21848 0.75573 0.14688 0.19919 0.95231 0.85001 0.66899 0.56078 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3621 3621 ERR1416186 ERX1486970 ERS1023423 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 phenotypic 10 SAMEA3716274 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716274|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:10Z|INSDC status:public|Submitter Id:b67e8100 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GAGCCAAT is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b67e8100 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#82 15658894 Illumina sequencing of library 15658894 constructed from sample accession ERS1023423 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GAGCCAAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#82.cram cram 203755890.0 1567353.0 SC RUN 18834 2#82 0:55 1:75 A:54313909;C:36830761;G:39339202;T:72967706;N:304312 55 75     54313909 36830761 39339202 72967706 304312 ERX1486970 ERS1023423 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.22292 0.7508 0.14996 0.20204 0.95166 0.83226 0.69559 0.52031 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures
3622 3622 ERR1416185 ERX1486969 ERS1023422 ERP013837 PRJEB12366 Overexpression of prl3 in zebrafish embryos Overexpression_of_prl3_in_zebrafish_embryos-sc-4037 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish embryos over expressing prl3 by use of outcrossed tgactin:prl3 fish comparing prl3 overexpression to wild type siblings ArrayExpress:E ERAD 455     ZMP phenotype 240 1 phenotypic 9 SAMEA3716273 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Pharyngula:Prim 5 ZFS:0000029|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 17|External Id:SAMEA3716273|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:38Z|INSDC last update:2015 12 17T16:32:10Z|INSDC status:public|Submitter Id:b6775510 a3ff 11e5 9757 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 240 clutch 1 plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGAATGAT is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph240|sample name:b6775510 a3ff 11e5 9757 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18834 2#81 15658893 Illumina sequencing of library 15658893 constructed from sample accession ERS1023422 for study accession ERP013837. This is part of an Illumina multiplexed sequencing run 18834 2. This submission includes reads tagged with the sequence GGAATGAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013837 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18834_2#81.cram cram 222175980.0 1709046.0 SC RUN 18834 2#81 0:55 1:75 A:59546469;C:39694179;G:41704973;T:80895160;N:335199 55 75     59546469 39694179 41704973 80895160 335199 ERX1486969 ERS1023422 ERA624582 European Nucleotide Archive Wellcome Sanger Institute 2 0.22409 0.76532 0.13898 0.18022 0.95542 0.83175 0.7447 0.43667 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-17 Pharyngula Embryo Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;