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26 rows where devstage_curation = "Juvenile" and experiment.library_selection = "PCR"

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experiment.platform 3

technology 2

experiment.library_strategy 2

experiment.library_layout 2

experiment.library_source 1

experiment.library_selection 1

  • PCR · 26 ✖

devstage_curation_coarse 1

devstage_curation 1

  • Juvenile · 26 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
68196 68196 SRR17658725 SRX13826756 SRS11705914 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T60d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T60D T60D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20334742200.0 67782474.0 T60D.7z 0:150 1:150 A:5482201207;C:4682998764;G:4635775004;T:5533378494;N:388731 150 150     5482201207 4682998764 4635775004 5533378494 388731 SRX13826756 SRS11705914 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.94378 0.94515 0.04989 0.04997 0.69848 0.69978 0.50317 0.5041 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68197 68197 SRR17658726 SRX13826755 SRS11705913 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T45d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T45D T45D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20230560300.0 67435201.0 T45D.7z 0:150 1:150 A:5444816209;C:4663007584;G:4631943733;T:5490408754;N:384020 150 150     5444816209 4663007584 4631943733 5490408754 384020 SRX13826755 SRS11705913 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.88041 0.881 0.04485 0.04492 0.72163 0.72236 0.52232 0.52307 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68198 68198 SRR17658727 SRX13826754 SRS11705912 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         T35d ZHT   strain:AB|isolate:35|breed:zebrafish|cultivar:TEST|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish T35D T35D heat treated zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20630503200.0 68768344.0 T35D.7z 0:150 1:150 A:5660657832;C:4654929757;G:4598083304;T:5716350276;N:482031 150 150     5660657832 4654929757 4598083304 5716350276 482031 SRX13826754 SRS11705912 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.9134 0.91476 0.06961 0.06972 0.69035 0.69215 0.52155 0.5154 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68199 68199 SRR17658728 SRX13826753 SRS11705911 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C60d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:60dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C60D C60D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     10921407600.0 44923977.0 C60D.7z   A:2992232295;C:2470688717;G:2440861228;T:3017432565;N:192795         2992232295 2470688717 2440861228 3017432565 192795 SRX13826753 SRS11705911 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.93932 0.94095 0.06489 0.06559 0.77871 0.77759 0.56384 0.56447 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68200 68200 SRR17658729 SRX13826752 SRS11705910 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C45d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:45dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C45D C45D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20413229700.0 68044099.0 C45D.7z 0:150 1:150 A:5619395833;C:4581611789;G:4543973618;T:5667873613;N:374847 150 150     5619395833 4581611789 4543973618 5667873613 374847 SRX13826752 SRS11705910 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.86848 0.87064 0.0719 0.07252 0.69879 0.69834 0.52279 0.51074 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68201 68201 SRR17658730 SRX13826751 SRS11705909 SRP355720 PRJNA798511 Comparative analysis of transcriptome for heat induced zebrafish during sex differentiation PRJNA798511 Other heat treated zebrafish         C35d ZHT   strain:AB|isolate:28|breed:zebrafish|cultivar:WT|ecotype:CHINA|age:35dpf|sex:not collected|tissue:whole organism|BioSampleModel:Model organism or animal                 RNAq of zebrafish C35D C35D WT zebrafish     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP355720   loader:fastq load.py     20469803700.0 68232679.0 C35D.7z 0:150 1:150 A:5556774511;C:4678377106;G:4627472920;T:5606765895;N:413268 150 150     5556774511 4678377106 4627472920 5606765895 413268 SRX13826751 SRS11705909 SRA1358616 Hunan University of Science and Technology|School of Life and Health Sciences Hunan University of Science and Technology 2 0.93663 0.93871 0.06853 0.06895 0.6982 0.69901 0.51209 0.51148 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2022-12-09 Juvenile Juvenile Whole Organism All anatomical structures
68297 68297 SRR099352 SRX041562 SRS172412 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode CTCGCGTGTC 4433 1MA D8 4433 1MA D8                     1 4433 1MA D8 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         70233197.0 233302.0 4433 1MA D8 0:4 1:297.04   4 297               SRX041562 SRS172412 SRA029829 Stanford University|Quake Stanford University 1 0.14812   0.01088   0.99969   0.10799   36   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68298 68298 SRR099351 SRX041561 SRS172411 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode CGTGTCTCTA 4433 1MA C7 4433 1MA C7                     1 4433 1MA C7 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         109094731.0 316792.0 4433 1MA C7 0:4 1:340.37   4 340               SRX041561 SRS172411 SRA029829 Stanford University|Quake Stanford University 1 0.13409   0.01258   0.99955   0.01535   37   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68299 68299 SRR099350 SRX041560 SRS172410 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode ATATCGCGAG 4433 1MA B6 4433 1MA B6                     1 4433 1MA B6 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         110436791.0 353780.0 4433 1MA B6 0:4 1:308.16   4 308               SRX041560 SRS172410 SRA029829 Stanford University|Quake Stanford University 1 0.28629   0.01104   0.99945   0.0273   107   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68300 68300 SRR099349 SRX041559 SRS172409 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode ATCAGACACG 4433 1MA A5 4433 1MA A5                     1 4433 1MA A5 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         107336405.0 335816.0 4433 1MA A5 0:4 1:315.63   4 315               SRX041559 SRS172409 SRA029829 Stanford University|Quake Stanford University 1 0.16203   0.01649   0.99935   0.00111   37   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68301 68301 SRR099329 SRX041558 SRS172408 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode AGCACTGTAG 4432 1MA D4 4432 1MA D4                     1 4432 1MA D4 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         94113837.0 297721.0 4432 1MA D4 0:4 1:312.11   4 312               SRX041558 SRS172408 SRA029829 Stanford University|Quake Stanford University 1 0.16753   0.02013   0.99979   3e-05   37   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68302 68302 SRR099328 SRX041557 SRS172407 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode AGACGCACTC 4432 1MA C3 4432 1MA C3                     1 4432 1MA C3 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         77768777.0 243405.0 4432 1MA C3 0:4 1:315.50   4 315               SRX041557 SRS172407 SRA029829 Stanford University|Quake Stanford University 1 0.16711   0.01816   0.99979   0.0   37   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68303 68303 SRR099327 SRX041556 SRS172406 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode ACGCTCGACA 4432 1MA B2 4432 1MA B2                     1 4432 1MA B2 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         120450312.0 390504.0 4432 1MA B2 0:4 1:304.45   4 304               SRX041556 SRS172406 SRA029829 Stanford University|Quake Stanford University 1 0.18757   0.01811   0.99977   0.00024   59   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68304 68304 SRR099326 SRX041555 SRS172405 SRP005640 PRJNA79973 Zebrafish Development 4432-2WA Other Sample from publication: Determinism and Stochasticity during Maturation of the Zebrafish Antibody Repertoire. Authors: Jiang Weinstein Penland White Fish and Quake.   pubmed:21393572 Immunoglobulin heavy chain cDNA from 1 mpf WIK zebrafish Danio rerio leading with MID barcode ACGAGTGCGT 4432 1MA A1 4432 1MA A1                     1 4432 1MA A1 Zebrafish WIK Standard Roche 454 GS Titanium shotgun library protocol was followed.     AMPLICON TRANSCRIPTOMIC PCR SINGLE LS454 454 GS FLX Titanium <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> SRP005640         145945736.0 457354.0 4432 1MA A1 0:4 1:315.11   4 315               SRX041555 SRS172405 SRA029829 Stanford University|Quake Stanford University 1 0.17607   0.02473   0.99957   0.00036   40   B   usable mapping rate legacy early unknown random_priming unknown bulk other_seq 454   United States 2011-04-07 Juvenile Juvenile BCR TCR repertoire Hematopoietic System
68548 68548 SRR18056674 SRX14208687 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT6 6 6 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT6.R1.fq.gz SS3WT6.R2.fq.gz fastq fastq 7174164397.0 25400980.0 SS3WT6.R1.fq.gz 0:141.31 1:141.13 A:1934605412;C:1644763885;G:1664938935;T:1929811138;N:45027 141 141     1934605412 1644763885 1664938935 1929811138 45027 SRX14208687 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94928 0.94948 0.09187 0.09099 0.68765 0.68769 0.50435 0.50363 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
68549 68549 SRR18056675 SRX14208686 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT5 5 5 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT5.R1.fq.gz SS3WT5.R2.fq.gz fastq fastq 7159028081.0 25133913.0 SS3WT5.R1.fq.gz 0:142.50 1:142.33 A:1905921436;C:1664337487;G:1683294939;T:1905427825;N:46394 142 142     1905921436 1664337487 1683294939 1905427825 46394 SRX14208686 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94917 0.95027 0.09384 0.09347 0.6594 0.65894 0.49218 0.49202 122 122 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
68550 68550 SRR18056676 SRX14208685 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT4 4 4 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT4.R1.fq.gz SS3WT4.R2.fq.gz fastq fastq 6985092696.0 24360978.0 SS3WT4.R1.fq.gz 0:143.44 1:143.29 A:1858629258;C:1624045323;G:1642960060;T:1859412787;N:45268 143 143     1858629258 1624045323 1642960060 1859412787 45268 SRX14208685 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94221 0.94208 0.1047 0.1038 0.66231 0.66251 0.49213 0.49128 113 112 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
68551 68551 SRR18056677 SRX14208684 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT3 3 3 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT3.R1.fq.gz SS3WT3.R2.fq.gz fastq fastq 6604271936.0 23189546.0 SS3WT3.R1.fq.gz 0:142.47 1:142.32 A:1765899330;C:1527534084;G:1543609939;T:1767186572;N:42011 142 142     1765899330 1527534084 1543609939 1767186572 42011 SRX14208684 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94017 0.94088 0.10254 0.10225 0.65163 0.65167 0.47798 0.47707 131 131 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
68552 68552 SRR18056678 SRX14208683 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT2 2 2 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT2.R1.fq.gz SS3WT2.R2.fq.gz fastq fastq 6674317073.0 23265242.0 SS3WT2.R1.fq.gz 0:143.52 1:143.36 A:1768071045;C:1560492667;G:1576548690;T:1769161220;N:43451 143 143     1768071045 1560492667 1576548690 1769161220 43451 SRX14208683 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94677 0.9473 0.08956 0.08902 0.66559 0.66557 0.48058 0.48136 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
68553 68553 SRR18056679 SRX14208682 SRS12030730 SRP360305 PRJNA806354 Danio rerio Raw sequence reads PRJNA806354 Whole Genome Sequencing Danio rerio RNA seq reads       Model organism or animal sample from Danio rerio sample 001   breed:AB|age:50dpf|sex:not collected|tissue:b1|BioSampleModel:Model organism or animal                 SS3WT1 1 1 commen method     RNA-Seq TRANSCRIPTOMIC PCR PAIRED ILLUMINA HiSeq X Ten   SRP360305     SS3WT1.R1.fq.gz SS3WT1.R2.fq.gz fastq fastq 6848211264.0 23787995.0 SS3WT1.R1.fq.gz 0:144.06 1:143.82 A:1825907736;C:1587014566;G:1607121352;T:1828122105;N:45505 144 143     1825907736 1587014566 1607121352 1828122105 45505 SRX14208682 SRS12030730 SRA1373545 Shanghai Ocean University|College of Fisheries and life Shanghai Ocean University 2 0.94226 0.94255 0.09053 0.08971 0.65807 0.65823 0.48525 0.48427 150 150 B B biological fallback assumption illumina hiseq_era unknown random_priming unknown bulk unknown unknown   China 2022-02-22 Juvenile Juvenile Undetermined Undetermined
76452 76452 SRR24950188 SRX20708357 SRS18001302 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep1 OE1w replicate 1 OE1w replicate 1 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w1_1.fq.gz OE1w1_2.fq.gz fastq fastq 6792141900.0 22640473.0 OE1w1 1.fq.gz 0:150 1:150 A:1821318465;C:1573309073;G:1556399365;T:1841095017;N:19980 150 150     1821318465 1573309073 1556399365 1841095017 19980 SRX20708357 SRS18001302 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.92576 0.91367 0.07095 0.07022 0.74884 0.75012 0.52564 0.52623 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76453 76453 SRR24950189 SRX20708356 SRS18001301 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep3 CTL1w replicate 3 CTL1w replicate 3 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w3_2.fq.gz CTL1w3_1.fq.gz fastq fastq 6615956700.0 22053189.0 CTL1w3 1.fq.gz 0:150 1:150 A:1790825663;C:1516487260;G:1497904437;T:1810720169;N:19171 150 150     1790825663 1516487260 1497904437 1810720169 19171 SRX20708356 SRS18001301 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93183 0.91562 0.07118 0.07012 0.7655 0.7682 0.53912 0.52899 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76454 76454 SRR24950190 SRX20708355 SRS18001300 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep2 CTL1w replicate 2 CTL1w replicate 2 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w2_1.fq.gz CTL1w2_2.fq.gz fastq fastq 6582133800.0 21940446.0 CTL1w2 1.fq.gz 0:150 1:150 A:1766322301;C:1524014072;G:1506429130;T:1785350030;N:18267 150 150     1766322301 1524014072 1506429130 1785350030 18267 SRX20708355 SRS18001300 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.92389 0.06545 0.06458 0.76357 0.76583 0.53821 0.54255 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76455 76455 SRR24950191 SRX20708354 SRS18001299 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w1   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal                 RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 CTL1w replicate 1 CTL1w replicate 1 RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 1     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     CTL1w1_2.fq.gz CTL1w1_1.fq.gz fastq fastq 6781172100.0 22603907.0 CTL1w1 1.fq.gz 0:150 1:150 A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612 150 150     1804085074 1581571692 1567430366 1828066356 18612 SRX20708354 SRS18001299 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93867 0.91921 0.06237 0.06146 0.75858 0.76246 0.53972 0.53069 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76460 76460 SRR24950198 SRX20708347 SRS18001292 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w3   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 3|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep3 OE1w replicate 3 OE1w replicate 3 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 3     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w3_2.fq.gz OE1w3_1.fq.gz fastq fastq 6593130600.0 21977102.0 OE1w3 1.fq.gz 0:150 1:150 A:1770061078;C:1529682678;G:1510949508;T:1782338558;N:98778 150 150     1770061078 1529682678 1510949508 1782338558 98778 SRX20708347 SRS18001292 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93503 0.922 0.06588 0.06574 0.7503 0.75201 0.52969 0.53743 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System
76461 76461 SRR24950199 SRX20708346 SRS18001291 SRP444408 PRJNA984676 RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs PRJNA984676 Other To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.       RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w2   strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 2|BioSampleModel:Model organism or animal                 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments rep2 OE1w replicate 2 OE1w replicate 2 RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments replicate 2     RNA-Seq TRANSCRIPTOMIC PCR PAIRED BGISEQ BGISEQ-500   SRP444408     OE1w2_2.fq.gz OE1w2_1.fq.gz fastq fastq 6742724700.0 22475749.0 OE1w2 1.fq.gz 0:150 1:150 A:1802906309;C:1568304698;G:1553625077;T:1817795677;N:92939 150 150     1802906309 1568304698 1553625077 1817795677 92939 SRX20708346 SRS18001291 SRA1657339 East China Normal University|School of Life Sciences East China Normal University 2 0.93354 0.91844 0.06989 0.0686 0.74665 0.74888 0.52723 0.52812 150 150 B B biological fallback assumption bgi bgi unknown random_priming unknown bulk unknown unknown   China 2023-06-16 Juvenile Juvenile Heart Cardiovascular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;