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run_metadata

2,367 rows where devstage_curation = "Hatching" and tissue_curation = "Whole Organism"

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experiment.library_selection 8

technology 7

experiment.library_strategy 5

experiment.platform 4

experiment.library_source 2

experiment.library_layout 2

tissue_curation_coarse 1

tissue_curation 1

  • Whole Organism · 2,367 ✖

devstage_curation_coarse 1

devstage_curation 1

  • Hatching · 2,367 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
79 79 DRR032745 DRX029551 DRS049950 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr 60h 2 SAMD00028142   sample name:Dr 60h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028142 DRX029551 Dr 60h 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028142       3875337000.0 38753370.0 DRR032745 0:100 1:0 A:1042558903;C:899892111;G:896867583;T:1035981420;N:36983 100 0     1042558903 899892111 896867583 1035981420 36983 DRX029551 DRS049950 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.91891   0.09445   0.66156   0.45564   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Hatching Embryo Whole Organism All anatomical structures
80 80 DRR032744 DRX029550 DRS049949 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr 60h 1 SAMD00028141   sample name:Dr 60h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:60h Pec fin|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028141 DRX029550 Dr 60h 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028141       3538468200.0 35384682.0 DRR032744 0:100 1:0 A:960664313;C:812459988;G:809014008;T:956295205;N:34686 100 0     960664313 812459988 809014008 956295205 34686 DRX029550 DRS049949 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.91388   0.10346   0.66076   0.45203   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Hatching Embryo Whole Organism All anatomical structures
84 84 DRR032740 DRX029546 DRS049945 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr 48h 2 SAMD00028137   sample name:Dr 48h 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028137 DRX029546 Dr 48h 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028137       3702804700.0 37028047.0 DRR032740 0:100 1:0 A:993931475;C:862403562;G:857808891;T:988623734;N:37038 100 0     993931475 862403562 857808891 988623734 37038 DRX029546 DRS049945 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92508   0.08526   0.68349   0.45769   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Hatching Embryo Whole Organism All anatomical structures
85 85 DRR032739 DRX029545 DRS049944 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 50 individuals Dr 48h 1 SAMD00028136   sample name:Dr 48h 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:48h Long pec|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028136 DRX029545 Dr 48h 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028136       3980240400.0 39802404.0 DRR032739 0:100 1:0 A:1070497788;C:925240883;G:920038728;T:1064422474;N:40527 100 0     1070497788 925240883 920038728 1064422474 40527 DRX029545 DRS049944 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92349   0.08681   0.67874   0.46565   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Hatching Embryo Whole Organism All anatomical structures
3833 3833 ERR1442855 ERX1513232 ERS1079164 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 E SAMEA3892030 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892030|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:721c4700 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:721c4700 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 2#25 16564907 Illumina sequencing of library 16564907 constructed from sample accession ERS1079164 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 2. This submission includes reads tagged with the sequence TGCGATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_2#25.cram cram 342826200.0 1714131.0 SC RUN 19912 2#25 0:100 1:100 A:92267389;C:78512069;G:78411486;T:93094559;N:540697 100 100     92267389 78512069 78411486 93094559 540697 ERX1513232 ERS1079164 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.9509 0.95363 0.12828 0.12554 0.70108 0.70319 0.48143 0.48153 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3834 3834 ERR1442854 ERX1513231 ERS1079163 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 D SAMEA3892029 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892029|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:72108730 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:72108730 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 2#24 16564990 Illumina sequencing of library 16564990 constructed from sample accession ERS1079163 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 2. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_2#24.cram cram 326623600.0 1633118.0 SC RUN 19912 2#24 0:100 1:100 A:89318617;C:73208163;G:72754082;T:90823669;N:519069 100 100     89318617 73208163 72754082 90823669 519069 ERX1513231 ERS1079163 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94511 0.94544 0.13835 0.13073 0.69905 0.69952 0.48493 0.48602 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3835 3835 ERR1442853 ERX1513230 ERS1079162 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 C SAMEA3892028 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892028|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:7204c760 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7204c760 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 2#23 16564978 Illumina sequencing of library 16564978 constructed from sample accession ERS1079162 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 2. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_2#23.cram cram 311090600.0 1555453.0 SC RUN 19912 2#23 0:100 1:100 A:84572600;C:70297092;G:69996264;T:85731709;N:492935 100 100     84572600 70297092 69996264 85731709 492935 ERX1513230 ERS1079162 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94809 0.94818 0.12877 0.12317 0.69483 0.69489 0.48341 0.48361 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3836 3836 ERR1442852 ERX1513229 ERS1079160 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 B SAMEA3892026 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892026|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 2#22 16564966 Illumina sequencing of library 16564966 constructed from sample accession ERS1079160 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 2. This submission includes reads tagged with the sequence TGATACGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_2#22.cram cram 277743400.0 1388717.0 SC RUN 19912 2#22 0:100 1:100 A:75655622;C:62511652;G:62256895;T:76876667;N:442564 100 100     75655622 62511652 62256895 76876667 442564 ERX1513229 ERS1079160 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.9453 0.94708 0.13381 0.12762 0.6966 0.69789 0.48254 0.47926 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3837 3837 ERR1442851 ERX1513228 ERS1079159 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 A SAMEA3892025 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892025|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 2#21 16564954 Illumina sequencing of library 16564954 constructed from sample accession ERS1079159 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 2. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_2#21.cram cram 286378600.0 1431893.0 SC RUN 19912 2#21 0:100 1:100 A:77958419;C:64583899;G:64284800;T:79094162;N:457320 100 100     77958419 64583899 64284800 79094162 457320 ERX1513228 ERS1079159 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94576 0.94671 0.13603 0.13063 0.69745 0.69889 0.48382 0.4835 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3923 3923 ERR1442765 ERX1513142 ERS1079164 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 E SAMEA3892030 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892030|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:721c4700 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:721c4700 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 1#25 16564907 Illumina sequencing of library 16564907 constructed from sample accession ERS1079164 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence TGCGATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_1#25.cram cram 343087600.0 1715438.0 SC RUN 19912 1#25 0:100 1:100 A:92324509;C:78615813;G:78526073;T:93160132;N:461073 100 100     92324509 78615813 78526073 93160132 461073 ERX1513142 ERS1079164 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.95053 0.95308 0.1291 0.12693 0.70205 0.70189 0.48166 0.48477 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3924 3924 ERR1442764 ERX1513141 ERS1079163 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 D SAMEA3892029 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892029|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:72108730 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:72108730 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 1#24 16564990 Illumina sequencing of library 16564990 constructed from sample accession ERS1079163 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_1#24.cram cram 326954600.0 1634773.0 SC RUN 19912 1#24 0:100 1:100 A:89375102;C:73338360;G:72906229;T:90881289;N:453620 100 100     89375102 73338360 72906229 90881289 453620 ERX1513141 ERS1079163 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94619 0.94519 0.13794 0.12922 0.69919 0.70039 0.48314 0.48286 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3925 3925 ERR1442763 ERX1513140 ERS1079162 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 C SAMEA3892028 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892028|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:7204c760 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7204c760 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 1#23 16564978 Illumina sequencing of library 16564978 constructed from sample accession ERS1079162 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_1#23.cram cram 311180000.0 1555900.0 SC RUN 19912 1#23 0:100 1:100 A:84596939;C:70332473;G:70023108;T:85805096;N:422384 100 100     84596939 70332473 70023108 85805096 422384 ERX1513140 ERS1079162 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94692 0.9469 0.12832 0.12129 0.69532 0.69763 0.48108 0.48145 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3926 3926 ERR1442762 ERX1513139 ERS1079160 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 B SAMEA3892026 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892026|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 1#22 16564966 Illumina sequencing of library 16564966 constructed from sample accession ERS1079160 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence TGATACGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_1#22.cram cram 278249600.0 1391248.0 SC RUN 19912 1#22 0:100 1:100 A:75794246;C:62668401;G:62403812;T:77001937;N:381204 100 100     75794246 62668401 62403812 77001937 381204 ERX1513139 ERS1079160 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94322 0.94587 0.13241 0.12615 0.69708 0.69739 0.47441 0.48053 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
3927 3927 ERR1442761 ERX1513138 ERS1079159 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 A SAMEA3892025 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892025|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19912 1#21 16564954 Illumina sequencing of library 16564954 constructed from sample accession ERS1079159 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19912_1#21.cram cram 285259800.0 1426299.0 SC RUN 19912 1#21 0:100 1:100 A:77700221;C:64336044;G:64029365;T:78802636;N:391534 100 100     77700221 64336044 64029365 78802636 391534 ERX1513138 ERS1079159 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.9457 0.94596 0.13416 0.12822 0.69712 0.69787 0.478 0.48046 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4013 4013 ERR1442675 ERX1513052 ERS1079164 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 E SAMEA3892030 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892030|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:721c4700 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:721c4700 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 2#25 16564907 Illumina sequencing of library 16564907 constructed from sample accession ERS1079164 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 2. This submission includes reads tagged with the sequence TGCGATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_2#25.cram cram 347879600.0 1739398.0 SC RUN 19850 2#25 0:100 1:100 A:93743596;C:79781679;G:79671273;T:94560046;N:123006 100 100     93743596 79781679 79671273 94560046 123006 ERX1513052 ERS1079164 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.95264 0.95241 0.12874 0.12603 0.70423 0.70554 0.48295 0.48111 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4014 4014 ERR1442674 ERX1513051 ERS1079163 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 D SAMEA3892029 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892029|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:72108730 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:72108730 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 2#24 16564990 Illumina sequencing of library 16564990 constructed from sample accession ERS1079163 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 2. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_2#24.cram cram 331647400.0 1658237.0 SC RUN 19850 2#24 0:100 1:100 A:90746097;C:74513189;G:74039337;T:92229652;N:119125 100 100     90746097 74513189 74039337 92229652 119125 ERX1513051 ERS1079163 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94618 0.94586 0.13823 0.13115 0.69871 0.70092 0.47989 0.48254 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4015 4015 ERR1442673 ERX1513050 ERS1079162 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 C SAMEA3892028 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892028|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:7204c760 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7204c760 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 2#23 16564978 Illumina sequencing of library 16564978 constructed from sample accession ERS1079162 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 2. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_2#23.cram cram 315836800.0 1579184.0 SC RUN 19850 2#23 0:100 1:100 A:85937872;C:71470725;G:71144592;T:87170402;N:113209 100 100     85937872 71470725 71144592 87170402 113209 ERX1513050 ERS1079162 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94753 0.94785 0.12928 0.12312 0.69595 0.69808 0.48246 0.48042 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4016 4016 ERR1442672 ERX1513049 ERS1079160 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 B SAMEA3892026 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892026|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 2#22 16564966 Illumina sequencing of library 16564966 constructed from sample accession ERS1079160 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 2. This submission includes reads tagged with the sequence TGATACGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_2#22.cram cram 282094400.0 1410472.0 SC RUN 19850 2#22 0:100 1:100 A:76916198;C:63615255;G:63343627;T:78121132;N:98188 100 100     76916198 63615255 63343627 78121132 98188 ERX1513049 ERS1079160 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94707 0.94712 0.13452 0.12804 0.69635 0.69739 0.47981 0.48255 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4017 4017 ERR1442671 ERX1513048 ERS1079159 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 A SAMEA3892025 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892025|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 2#21 16564954 Illumina sequencing of library 16564954 constructed from sample accession ERS1079159 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 2. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_2#21.cram cram 290088800.0 1450444.0 SC RUN 19850 2#21 0:100 1:100 A:79099632;C:65503971;G:65177812;T:80208904;N:98481 100 100     79099632 65503971 65177812 80208904 98481 ERX1513048 ERS1079159 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94624 0.94687 0.1345 0.12881 0.6955 0.69672 0.48654 0.48763 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4103 4103 ERR1442585 ERX1512962 ERS1079164 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 E SAMEA3892030 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892030|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:721c4700 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:721c4700 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 1#25 16564907 Illumina sequencing of library 16564907 constructed from sample accession ERS1079164 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 1. This submission includes reads tagged with the sequence TGCGATCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_1#25.cram cram 347541400.0 1737707.0 SC RUN 19850 1#25 0:100 1:100 A:93646292;C:79741075;G:79630546;T:94449584;N:73903 100 100     93646292 79741075 79630546 94449584 73903 ERX1512962 ERS1079164 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.95187 0.95196 0.12852 0.12603 0.70262 0.70451 0.45774 0.48044 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4104 4104 ERR1442584 ERX1512961 ERS1079163 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 D SAMEA3892029 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892029|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:72108730 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:72108730 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 1#24 16564990 Illumina sequencing of library 16564990 constructed from sample accession ERS1079163 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 1. This submission includes reads tagged with the sequence TTGACTCT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_1#24.cram cram 330896600.0 1654483.0 SC RUN 19850 1#24 0:100 1:100 A:90578026;C:74308275;G:73865862;T:92073419;N:71018 100 100     90578026 74308275 73865862 92073419 71018 ERX1512961 ERS1079163 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94651 0.94717 0.13762 0.12969 0.69895 0.6995 0.48131 0.48104 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4105 4105 ERR1442583 ERX1512960 ERS1079162 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 C SAMEA3892028 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892028|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:44Z|INSDC status:public|Submitter Id:7204c760 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:7204c760 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 1#23 16564978 Illumina sequencing of library 16564978 constructed from sample accession ERS1079162 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 1. This submission includes reads tagged with the sequence TGCATAGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_1#23.cram cram 315560000.0 1577800.0 SC RUN 19850 1#23 0:100 1:100 A:85853573;C:71429244;G:71148968;T:87064834;N:63381 100 100     85853573 71429244 71148968 87064834 63381 ERX1512960 ERS1079162 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94828 0.9483 0.13001 0.12402 0.69824 0.69998 0.47786 0.48108 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4106 4106 ERR1442582 ERX1512959 ERS1079160 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 B SAMEA3892026 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892026|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71f8e080 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 1#22 16564966 Illumina sequencing of library 16564966 constructed from sample accession ERS1079160 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 1. This submission includes reads tagged with the sequence TGATACGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_1#22.cram cram 281602400.0 1408012.0 SC RUN 19850 1#22 0:100 1:100 A:76777089;C:63511942;G:63253246;T:77999423;N:60700 100 100     76777089 63511942 63253246 77999423 60700 ERX1512959 ERS1079160 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94719 0.94867 0.13364 0.12755 0.69806 0.69871 0.47768 0.48304 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
4107 4107 ERR1442581 ERX1512958 ERS1079159 ERP014517 PRJEB12982 Baseline expression from transcriptional profiling of zebrafish developmental stages 3 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 Transcriptome Analysis RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 475     ZMP phenotype 119 A SAMEA3892025 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching:Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892025|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:37:43Z|INSDC status:public|Submitter Id:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:71ec8470 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 19850 1#21 16564954 Illumina sequencing of library 16564954 constructed from sample accession ERS1079159 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19850 1. This submission includes reads tagged with the sequence TCGAGCGT. RNA seq dUTP eukaryotic   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP014517 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 19850_1#21.cram cram 289813800.0 1449069.0 SC RUN 19850 1#21 0:100 1:100 A:79034209;C:65439026;G:65123458;T:80156862;N:60245 100 100     79034209 65439026 65123458 80156862 60245 ERX1512958 ERS1079159 ERA648700 European Nucleotide Archive Wellcome Sanger Institute 2 0.94635 0.94695 0.13572 0.12954 0.69676 0.69781 0.48256 0.483 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2016-03-10 Hatching Embryo Whole Organism All anatomical structures
7946 7946 ERR015563 ERX005934 ERS012707 ERP000263 PRJEB2208 Zebrafish gene three prime end pull down for genome annotation E-MTAB-308 Transcriptome Analysis         E MTAB 308:Zebrafish embryo 2 dpf 2 SAMEA898403 Wellcome Sanger Institute Age:2 days|Alias:E MTAB 308:Zebrafish embryo 2 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at 70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012707|Sample Name:ERS012707|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio                 Illumina Genome Analyzer II paired end sequencing; Zebrafish gene 3 prime end pull down for genome annotation E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 2 dpf three prime pull down paired end 250 to 300 bp insert Zebrafish embro 2 dpf mRNA three prime end Zebrafish gene three prime end pull down for genome annotation 20 ug of total RNA was fragmented using RNA Fragmentation Reagent Ambion for 5 minutes at 70 C and ethanol precipitated with glycogen and LiCl. RNA was annealed to the oligo stBPM1polyT22 biotin GGCCAGTCCTGGAGTTTTTTTTTTTTTTTTTTTTTTVN and bound to streptavidin magnetic beads. post washing by pull down on a magnet the bound RNA was reverse transcribed with SuperScript II Invitrogen and a second strand synthesised with DNA polymerase I Promega and RNase H NEB. post further washing the double strand cDNA was released from the beads with BpmI NEB. The cDNA was recovered with the QIAgen PCR Purification Kit and made into a standard Illumina library following the manufacturer's protocol with a fragment size of 250 to 300 bp. Experimental Factor: AGE:2 d|Experimental Factor: DEVELOPMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism|Experimental Factor: SEX:unknown sex RNA-Seq TRANSCRIPTOMIC other PAIRED ILLUMINA Illumina Genome Analyzer II   ERP000263 Illumina Genome Analyzer II paired end sequencing; Zebrafish gene three prime end pull down for genome annotation ENA FIRST PUBLIC:2010 08 19|ENA LAST UPDATE:2018 11 16 3444_2.srf srf 990308120.0 6515185.0 E MTAB 308:Illumina Genome Analyzer II sequencing of Zebrafish embryo 2 dpf three prime pull down paired end 250 to 300 bp insert 0:76 1:76 A:279665076;C:200433201;G:189692111;T:304366697;N:16151035 76 76     279665076 200433201 189692111 304366697 16151035 ERX005934 ERS012707 ERA010603 SC|Wellcome Trust Sanger Institute SC|Wellcome Trust Sanger Institute 2 0.93964 0.94008 0.40095 0.39969 0.74424 0.74915 0.49535 0.49761 76 76 B B biological fallback assumption illumina early_illumina 3prime other unknown bulk unknown unknown   United Kingdom 2010-08-19 Hatching Embryo Whole Organism All anatomical structures
8063 8063 ERR022487 ERX008918 ERS012707 ERP000400 PRJEB2333 Sequencing the Zebrafish transcriptome form a range of tissues and developmental stages using the Illumina Genome Analyzer E-MTAB-434 Other         E MTAB 308:Zebrafish embryo 2 dpf 2 SAMEA898403 Wellcome Sanger Institute Age:2 days|Alias:E MTAB 308:Zebrafish embryo 2 dpf 2|Broker name:ArrayExpress|Description:Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at 70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments.|DevelopmentalStage:embryo|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2010 08 19T15:57:35Z|INSDC last update:2018 03 08T15:25:04Z|INSDC status:public|InitialTimePoint:fertilization|OrganismPart:whole organism|SRA accession:ERS012707|Sample Name:ERS012707|Sex:unknown sex|StrainOrLine:Tuebingen|Title:Danio rerio                 Illumina Genome Analyzer II paired end sequencing; Sequencing the Zebrafish transcriptome form a range of tissues and developmental stages using the Illumina Genome Analyzer E MTAB 434:sequencing of Zebrafish embryo 2 dpf RNA from Zebrafish embryo 2 dpf Sequencing the Zebrafish transcriptome form a range of tissues and developmental stages using the Illumina Genome Analyzer Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at 70 C Total RNA was extracted using Trizol Reagent Invitrogen following the manufacturer's instructions. Pellets were resuspended RNase free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND 1000 Spectrophotometer Axon Instruments. Total RNA was made into an RNAseq Illumina library following the manufacturer's protocol including a DNase treatment between to 2 rounds of polyA pull down. The libraries have fragment size of 250 to 300 bp. Experimental Factor: AGE:2 d|Experimental Factor: DEVELPOMENTAL STAGE:embryo|Experimental Factor: ORGANISM PART:whole organism FL-cDNA TRANSCRIPTOMIC unspecified PAIRED ILLUMINA Illumina Genome Analyzer II   ERP000400 Illumina Genome Analyzer II paired end sequencing; Sequencing the Zebrafish transcriptome form a range of tissues and developmental stages using the Illumina Genome Analyzer ENA FIRST PUBLIC:2011 03 10|ENA LAST UPDATE:2018 11 16 5141_5.srf srf 4321796696.0 28432873.0 E MTAB 434:5141 5.srf 0:76 1:76 A:1185782721;C:976784015;G:973264244;T:1178952292;N:7013424 76 76     1185782721 976784015 973264244 1178952292 7013424 ERX008918 ERS012707 ERA015179 SC|Wellcome Trust Sanger Institute SC|Wellcome Trust Sanger Institute 2 0.96001 0.95851 0.15373 0.15636 0.69051 0.69576 0.47409 0.47525 76 76 B B biological fallback assumption illumina early_illumina unknown poly_a unknown bulk unknown unknown   United Kingdom 2010-08-19 Hatching Embryo Whole Organism All anatomical structures
9176 9176 ERR411484 ERX377845 ERS242882 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066636 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:52Z|External Id:SAMEA2066636|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:52Z|INSDC status:public|Submitter Id:fWIK mSAT B 48h sc 2013 05 02T10:41:06Z 1621637|common name:zebrafish|sample description:Whole embryo RNA|sample name:fWIK mSAT B 48h sc 2013 05 02T10:41:06Z 1621637|scientific name:Danio rerio|strain:WIK/SAT                 Illumina HiSeq 2000 paired end sequencing SC EXP 9999 8#8 7365839 Illumina sequencing of library 7365839 constructed from sample accession ERS242882 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9999 8. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9999_8#8.bam bam 1998402900.0 13322686.0 SC RUN 9999 8#8 0:75 1:75 A:552696846;C:449614137;G:440623938;T:554601556;N:866423 75 75     552696846 449614137 440623938 554601556 866423 ERX377845 ERS242882 ERA281387 SC Wellcome Sanger Institute 2 0.95616 0.95506 0.0834 0.08315 0.70228 0.70309 0.45768 0.45522 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9178 9178 ERR411482 ERX377843 ERS242880 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066445 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:43Z|External Id:SAMEA2066445|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:43Z|INSDC status:public|Submitter Id:fWIK mSAT A 48h sc 2013 05 02T10:41:03Z 1621635|common name:zebrafish|sample description:Whole embryo RNA|sample name:fWIK mSAT A 48h sc 2013 05 02T10:41:03Z 1621635|scientific name:Danio rerio|strain:WIK/SAT                 Illumina HiSeq 2000 paired end sequencing SC EXP 9999 8#6 7365837 Illumina sequencing of library 7365837 constructed from sample accession ERS242880 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9999 8. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9999_8#6.bam bam 2425891800.0 16172612.0 SC RUN 9999 8#6 0:75 1:75 A:660414882;C:557663527;G:546708306;T:660052942;N:1052143 75 75     660414882 557663527 546708306 660052942 1052143 ERX377843 ERS242880 ERA281387 SC Wellcome Sanger Institute 2 0.9564 0.95554 0.08263 0.08288 0.69181 0.69286 0.46495 0.46762 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9180 9180 ERR411480 ERX377841 ERS242878 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066122 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:37Z|External Id:SAMEA2066122|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:37Z|INSDC status:public|Submitter Id:fSAT mWIK B 48h sc 2013 05 02T10:41:01Z 1621633|common name:zebrafish|sample description:Whole embryo RNA|sample name:fSAT mWIK B 48h sc 2013 05 02T10:41:01Z 1621633|scientific name:Danio rerio|strain:SAT/WIK                 Illumina HiSeq 2000 paired end sequencing SC EXP 9999 8#4 7365835 Illumina sequencing of library 7365835 constructed from sample accession ERS242878 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9999 8. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9999_8#4.bam bam 1686759000.0 11245060.0 SC RUN 9999 8#4 0:75 1:75 A:458217518;C:389292625;G:380733381;T:457788373;N:727103 75 75     458217518 389292625 380733381 457788373 727103 ERX377841 ERS242878 ERA281387 SC Wellcome Sanger Institute 2 0.95625 0.95634 0.08703 0.08737 0.68327 0.6859 0.45892 0.45672 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9182 9182 ERR411478 ERX377839 ERS242876 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066442 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:43Z|External Id:SAMEA2066442|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:43Z|INSDC status:public|Submitter Id:fSAT mWIK A 48h sc 2013 05 02T10:40:58Z 1621631|common name:zebrafish|sample description:Whole embryo RNA|sample name:fSAT mWIK A 48h sc 2013 05 02T10:40:58Z 1621631|scientific name:Danio rerio|strain:SAT/WIK                 Illumina HiSeq 2000 paired end sequencing SC EXP 9999 8#2 7365833 Illumina sequencing of library 7365833 constructed from sample accession ERS242876 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9999 8. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9999_8#2.bam bam 2120966700.0 14139778.0 SC RUN 9999 8#2 0:75 1:75 A:584858956;C:482109994;G:472719579;T:580348590;N:929581 75 75     584858956 482109994 472719579 580348590 929581 ERX377839 ERS242876 ERA281387 SC Wellcome Sanger Institute 2 0.95646 0.95628 0.07743 0.07795 0.70414 0.70522 0.46126 0.46064 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9184 9184 ERR411476 ERX377837 ERS242882 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066636 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:52Z|External Id:SAMEA2066636|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:52Z|INSDC status:public|Submitter Id:fWIK mSAT B 48h sc 2013 05 02T10:41:06Z 1621637|common name:zebrafish|sample description:Whole embryo RNA|sample name:fWIK mSAT B 48h sc 2013 05 02T10:41:06Z 1621637|scientific name:Danio rerio|strain:WIK/SAT                 Illumina HiSeq 2000 paired end sequencing SC EXP 9957 8#8 7365839 Illumina sequencing of library 7365839 constructed from sample accession ERS242882 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9957 8. This submission includes reads tagged with the sequence ACTTGA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9957_8#8.bam bam 3091838850.0 20612259.0 SC RUN 9957 8#8 0:75 1:75 A:858332091;C:693021762;G:679821069;T:859676612;N:987316 75 75     858332091 693021762 679821069 859676612 987316 ERX377837 ERS242882 ERA281387 SC Wellcome Sanger Institute 2 0.95604 0.95495 0.08413 0.08497 0.70108 0.70404 0.45406 0.46781 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9186 9186 ERR411474 ERX377835 ERS242880 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066445 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:43Z|External Id:SAMEA2066445|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:43Z|INSDC status:public|Submitter Id:fWIK mSAT A 48h sc 2013 05 02T10:41:03Z 1621635|common name:zebrafish|sample description:Whole embryo RNA|sample name:fWIK mSAT A 48h sc 2013 05 02T10:41:03Z 1621635|scientific name:Danio rerio|strain:WIK/SAT                 Illumina HiSeq 2000 paired end sequencing SC EXP 9957 8#6 7365837 Illumina sequencing of library 7365837 constructed from sample accession ERS242880 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9957 8. This submission includes reads tagged with the sequence GCCAAT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9957_8#6.bam bam 3724193550.0 24827957.0 SC RUN 9957 8#6 0:75 1:75 A:1017847887;C:853029258;G:836854862;T:1015281521;N:1180022 75 75     1017847887 853029258 836854862 1015281521 1180022 ERX377835 ERS242880 ERA281387 SC Wellcome Sanger Institute 2 0.95563 0.95599 0.08416 0.08479 0.69175 0.6924 0.46373 0.46612 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9188 9188 ERR411472 ERX377833 ERS242878 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066122 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:37Z|External Id:SAMEA2066122|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:37Z|INSDC status:public|Submitter Id:fSAT mWIK B 48h sc 2013 05 02T10:41:01Z 1621633|common name:zebrafish|sample description:Whole embryo RNA|sample name:fSAT mWIK B 48h sc 2013 05 02T10:41:01Z 1621633|scientific name:Danio rerio|strain:SAT/WIK                 Illumina HiSeq 2000 paired end sequencing SC EXP 9957 8#4 7365835 Illumina sequencing of library 7365835 constructed from sample accession ERS242878 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9957 8. This submission includes reads tagged with the sequence TGACCA. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9957_8#4.bam bam 2599801050.0 17332007.0 SC RUN 9957 8#4 0:75 1:75 A:708560926;C:598094915;G:585289634;T:707020711;N:834864 75 75     708560926 598094915 585289634 707020711 834864 ERX377833 ERS242878 ERA281387 SC Wellcome Sanger Institute 2 0.95567 0.95569 0.08903 0.08976 0.68523 0.68858 0.45918 0.44786 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9190 9190 ERR411470 ERX377831 ERS242876 ERP001280 PRJEB2925 maternal to Zygotic Transition maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 Transcriptome Analysis During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing.         SAMEA2066442 SC ArrayExpress DevelopmentalStage:48 hpf|ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:24Z|ENA LAST UPDATE:2018 03 08T16:23:43Z|External Id:SAMEA2066442|INSDC center name:SC|INSDC first public:2014 01 21T09:19:24Z|INSDC last update:2018 03 08T16:23:43Z|INSDC status:public|Submitter Id:fSAT mWIK A 48h sc 2013 05 02T10:40:58Z 1621631|common name:zebrafish|sample description:Whole embryo RNA|sample name:fSAT mWIK A 48h sc 2013 05 02T10:40:58Z 1621631|scientific name:Danio rerio|strain:SAT/WIK                 Illumina HiSeq 2000 paired end sequencing SC EXP 9957 8#2 7365833 Illumina sequencing of library 7365833 constructed from sample accession ERS242876 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 9957 8. This submission includes reads tagged with the sequence CGATGT. Illumina cDNA protocol   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001280 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 9957_8#2.bam bam 3272301900.0 21815346.0 SC RUN 9957 8#2 0:75 1:75 A:905607515;C:741197673;G:727316361;T:897128413;N:1051938 75 75     905607515 741197673 727316361 897128413 1051938 ERX377831 ERS242876 ERA281387 SC Wellcome Sanger Institute 2 0.95599 0.95526 0.0788 0.07938 0.70382 0.70593 0.4611 0.45991 75 75 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9389 9389 ERR273855 ERX248131 ERS183155 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888993 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:02:59Z|External Id:SAMEA1888993|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:02:59Z|INSDC status:public|Submitter Id:Zebrafish dag1 wt3 sc 2012 10 25T12:06:08Z 1503354|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from dag1 knockout incross 3. A 6 base indexing sequence TTAATC is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 wt3 sc 2012 10 25T12:06:08Z 1503354|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#6 6093530 Illumina sequencing of library 6093530 constructed from sample accession ERS183155 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence GCCAATGT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#6.bam bam 4050.0 27.0 SC RUN 8871 8#6 0:75 1:75 A:1205;C:654;G:737;T:1454;N:0 75 75     1205 654 737 1454 0 ERX248131 ERS183155 ERA212579 SC Wellcome Sanger Institute 2 0.05264 0.78261 0.05263 0.17391 1.0 0.99977   0.61538 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9390 9390 ERR273854 ERX248130 ERS183154 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889006 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:01:18Z|External Id:SAMEA1889006|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:01:18Z|INSDC status:public|Submitter Id:Zebrafish dag1 mut3 sc 2012 10 25T12:06:07Z 1503353|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 3. A 6 base indexing sequence GTAGAC is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 mut3 sc 2012 10 25T12:06:07Z 1503353|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#5 6093529 Illumina sequencing of library 6093529 constructed from sample accession ERS183154 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence ACAGTGGT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#5.bam bam 8550.0 57.0 SC RUN 8871 8#5 0:75 1:75 A:2434;C:1507;G:1583;T:3026;N:0 75 75     2434 1507 1583 3026 0 ERX248130 ERS183154 ERA212579 SC Wellcome Sanger Institute 2 0.02041 0.88 0.0204 0.2 1.0 0.99955   0.60606 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9391 9391 ERR273853 ERX248129 ERS183153 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888986 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:01:54Z|External Id:SAMEA1888986|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:01:54Z|INSDC status:public|Submitter Id:Zebrafish dag1 wt2 sc 2012 10 25T12:06:06Z 1503352|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from dag1 knockout incross 2. A 6 base indexing sequence AAGTTA is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 wt2 sc 2012 10 25T12:06:06Z 1503352|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#4 6093528 Illumina sequencing of library 6093528 constructed from sample accession ERS183153 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence TGACCACT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#4.bam bam 1050.0 7.0 SC RUN 8871 8#4 0:75 1:75 A:308;C:170;G:173;T:399;N:0 75 75     308 170 173 399 0 ERX248129 ERS183153 ERA212579 SC Wellcome Sanger Institute 2 0.0 0.71429 0.0 0.28571 1.0 0.99995   0.66666 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9392 9392 ERR273852 ERX248128 ERS183152 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889004 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:02:59Z|External Id:SAMEA1889004|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:02:59Z|INSDC status:public|Submitter Id:Zebrafish dag1 mut2 sc 2012 10 25T12:06:05Z 1503351|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 2. A 6 base indexing sequence TATCTA is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 mut2 sc 2012 10 25T12:06:05Z 1503351|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#3 6093527 Illumina sequencing of library 6093527 constructed from sample accession ERS183152 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence TTAGGCAT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#3.bam bam 4800.0 32.0 SC RUN 8871 8#3 0:75 1:75 A:1243;C:887;G:946;T:1724;N:0 75 75     1243 887 946 1724 0 ERX248128 ERS183152 ERA212579 SC Wellcome Sanger Institute 2 0.0 0.86207 0.0 0.10344 1.0 0.99965   0.5909 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9393 9393 ERR273851 ERX248127 ERS183151 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888985 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:01:18Z|External Id:SAMEA1888985|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:01:18Z|INSDC status:public|Submitter Id:Zebrafish dag1 wt1 sc 2012 10 25T12:06:05Z 1503350|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from dag1 knockout incross 1. A 6 base indexing sequence CTACCA is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 wt1 sc 2012 10 25T12:06:05Z 1503350|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#2 6093526 Illumina sequencing of library 6093526 constructed from sample accession ERS183151 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence CGATGTTT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#2.bam bam 3750.0 25.0 SC RUN 8871 8#2 0:75 1:75 A:1021;C:661;G:701;T:1367;N:0 75 75     1021 661 701 1367 0 ERX248127 ERS183151 ERA212579 SC Wellcome Sanger Institute 2 0.1 0.76191 0.05 0.04761 0.99997 0.99975 0.0 0.73333 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9394 9394 ERR273850 ERX248126 ERS183150 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889009 SC ArrayExpress DevelopmentalStage:Hatching day 2 ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T16:01:54Z|External Id:SAMEA1889009|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T16:01:54Z|INSDC status:public|Submitter Id:Zebrafish dag1 mut1 sc 2012 10 25T12:06:04Z 1503349|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 1. A 6 base indexing sequence TAGACA is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp phD|sample name:Zebrafish dag1 mut1 sc 2012 10 25T12:06:04Z 1503349|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8871 8#1 6093525 Illumina sequencing of library 6093525 constructed from sample accession ERS183150 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8871 8. This submission includes reads tagged with the sequence ATCACGTT. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8871_8#1.bam bam 3450.0 23.0 SC RUN 8871 8#1 0:75 1:75 A:1006;C:571;G:666;T:1207;N:0 75 75     1006 571 666 1207 0 ERX248126 ERS183150 ERA212579 SC Wellcome Sanger Institute 2 0.05264 0.78948 0.05263 0.15789 1.0 0.99977   0.75 75 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9407 9407 ERR273837 ERX248113 ERS152848 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889003 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:48:25Z|External Id:SAMEA1889003|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:48:25Z|INSDC status:public|Submitter Id:Zebrafish tpp1 wt3 sc 2012 06 28T15:45:44Z 1444029|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 wt3 sc 2012 06 28T15:45:44Z 1444029|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#6 5514802 Illumina sequencing of library 5514802 constructed from sample accession ERS152848 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence TTAATC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#6.bam bam 1307553100.0 9339665.0 SC RUN 8119 6#6 0:65 1:75 A:377442016;C:222791822;G:233900025;T:472226074;N:1193163 65 75     377442016 222791822 233900025 472226074 1193163 ERX248113 ERS152848 ERA212579 SC Wellcome Sanger Institute 2 0.45537 0.76031 0.10835 0.14297 0.88769 0.79417 0.33742 0.54829 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9408 9408 ERR273836 ERX248112 ERS152847 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889012 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T15:49:13Z|External Id:SAMEA1889012|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T15:49:13Z|INSDC status:public|Submitter Id:Zebrafish tpp1 mut3 sc 2012 06 28T15:45:42Z 1444028|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 mut3 sc 2012 06 28T15:45:42Z 1444028|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#5 5514801 Illumina sequencing of library 5514801 constructed from sample accession ERS152847 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence GTAGAC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#5.bam bam 945960680.0 6756862.0 SC RUN 8119 6#5 0:65 1:75 A:270590418;C:162738491;G:174175038;T:337628177;N:828556 65 75     270590418 162738491 174175038 337628177 828556 ERX248112 ERS152847 ERA212579 SC Wellcome Sanger Institute 2 0.49872 0.76006 0.15148 0.16707 0.88574 0.79395 0.55503 0.56935 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9409 9409 ERR273835 ERX248111 ERS152846 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888998 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:13Z|ENA LAST UPDATE:2018 03 08T15:48:37Z|External Id:SAMEA1888998|INSDC center name:SC|INSDC first public:2013 05 13T11:13:13Z|INSDC last update:2018 03 08T15:48:37Z|INSDC status:public|Submitter Id:Zebrafish tpp1 wt2 sc 2012 06 28T15:45:42Z 1444027|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 wt2 sc 2012 06 28T15:45:42Z 1444027|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#4 5514800 Illumina sequencing of library 5514800 constructed from sample accession ERS152846 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence AAGTTA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#4.bam bam 2274951420.0 16249653.0 SC RUN 8119 6#4 0:65 1:75 A:662173781;C:379986464;G:402425498;T:828260437;N:2105240 65 75     662173781 379986464 402425498 828260437 2105240 ERX248111 ERS152846 ERA212579 SC Wellcome Sanger Institute 2 0.51682 0.75262 0.15013 0.1794 0.89089 0.79644 0.6532 0.57735 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9410 9410 ERR273834 ERX248110 ERS152845 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888983 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:48:25Z|External Id:SAMEA1888983|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:48:25Z|INSDC status:public|Submitter Id:Zebrafish tpp1 mut2 sc 2012 06 28T15:45:41Z 1444026|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 mut2 sc 2012 06 28T15:45:41Z 1444026|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#3 5514799 Illumina sequencing of library 5514799 constructed from sample accession ERS152845 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence TATCTA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#3.bam bam 2529444540.0 18067461.0 SC RUN 8119 6#3 0:65 1:75 A:722739442;C:426533822;G:455236753;T:922587961;N:2346562 65 75     722739442 426533822 455236753 922587961 2346562 ERX248110 ERS152845 ERA212579 SC Wellcome Sanger Institute 2 0.46719 0.80836 0.12923 0.16498 0.88598 0.78198 0.58658 0.53397 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9411 9411 ERR273833 ERX248109 ERS152844 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1889002 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:49:13Z|External Id:SAMEA1889002|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:49:13Z|INSDC status:public|Submitter Id:Zebrafish tpp1 wt1 sc 2012 06 28T15:45:40Z 1444025|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 wt1 sc 2012 06 28T15:45:40Z 1444025|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#2 5514798 Illumina sequencing of library 5514798 constructed from sample accession ERS152844 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence CTACCA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#2.bam bam 1000855520.0 7148968.0 SC RUN 8119 6#2 0:65 1:75 A:288372410;C:165532355;G:185754344;T:360278074;N:918337 65 75     288372410 165532355 185754344 360278074 918337 ERX248109 ERS152844 ERA212579 SC Wellcome Sanger Institute 2 0.44708 0.73416 0.13516 0.14834 0.89455 0.79815 0.54327 0.55354 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9412 9412 ERR273832 ERX248108 ERS152843 ERP001559 PRJEB3118 Zebrafish transcript profiling Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 Transcriptome Analysis Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads.         SAMEA1888991 SC ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:48:37Z|External Id:SAMEA1888991|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:48:37Z|INSDC status:public|Submitter Id:Zebrafish tpp1 mut1 sc 2012 06 28T15:45:39Z 1444024|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 mut1 sc 2012 06 28T15:45:39Z 1444024|scientific name:Danio rerio|strain:mixed                 1 SC EXP 8119 6#1 5514797 Illumina sequencing of library 5514797 constructed from sample accession ERS152843 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence TAGACA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001559 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 8119_6#1.bam bam 2140713400.0 15290810.0 SC RUN 8119 6#1 0:65 1:75 A:619008051;C:355086185;G:382526021;T:782111627;N:1981516 65 75     619008051 355086185 382526021 782111627 1981516 ERX248108 ERS152843 ERA212579 SC Wellcome Sanger Institute 2 0.46849 0.76769 0.13597 0.15143 0.88925 0.79431 0.58723 0.58288 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-05-13 Hatching Embryo Whole Organism All anatomical structures
9441 9441 ERR449280 ERX415652 ERS360457 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224108 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:47:37Z|External Id:SAMEA2224108|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:47:37Z|INSDC status:public|Submitter Id:ZMP phenotype 32 7 sibling sc 2013 10 17T10:16:34Z 1727415|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 7. A 5 base indexing sequence AGCGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 7 sibling sc 2013 10 17T10:16:34Z 1727415|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#12 8402738 Illumina sequencing of library 8402738 constructed from sample accession ERS360457 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence AGCGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#12.cram cram 1849814260.0 13212959.0 SC RUN 11387 7#12 0:65 1:75 A:533428824;C:304150428;G:330787003;T:681245134;N:202871 65 75     533428824 304150428 330787003 681245134 202871 ERX415652 ERS360457 ERA291793 SC Wellcome Sanger Institute 2 0.46463 0.80855 0.1734 0.22751 0.925 0.78512 0.36033 0.65705 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9442 9442 ERR449279 ERX415651 ERS360456 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224107 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:50:07Z|External Id:SAMEA2224107|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:50:07Z|INSDC status:public|Submitter Id:ZMP phenotype 32 7 mutant sc 2013 10 17T10:16:33Z 1727414|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 32 clutch 7. A 5 base indexing sequence CCAAC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 7 mutant sc 2013 10 17T10:16:33Z 1727414|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#11 8402737 Illumina sequencing of library 8402737 constructed from sample accession ERS360456 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence CCAAC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#11.cram cram 2134280960.0 15244864.0 SC RUN 11387 7#11 0:65 1:75 A:613777080;C:341282618;G:395929898;T:783057897;N:233467 65 75     613777080 341282618 395929898 783057897 233467 ERX415651 ERS360456 ERA291793 SC Wellcome Sanger Institute 2 0.46373 0.79036 0.17535 0.21197 0.92206 0.79452 0.39462 0.68704 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9443 9443 ERR449278 ERX415650 ERS360455 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224106 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:49:06Z|External Id:SAMEA2224106|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:49:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 6 sibling sc 2013 10 17T10:16:32Z 1727413|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 6. A 5 base indexing sequence ACGGG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 6 sibling sc 2013 10 17T10:16:32Z 1727413|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#10 8402736 Illumina sequencing of library 8402736 constructed from sample accession ERS360455 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence ACGGG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#10.cram cram 1856493100.0 13260665.0 SC RUN 11387 7#10 0:65 1:75 A:535262360;C:318836976;G:330005057;T:672181855;N:206852 65 75     535262360 318836976 330005057 672181855 206852 ERX415650 ERS360455 ERA291793 SC Wellcome Sanger Institute 2 0.49362 0.79137 0.15601 0.20558 0.93827 0.80184 0.83736 0.71162 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9444 9444 ERR449277 ERX415649 ERS360454 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224105 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:47:37Z|External Id:SAMEA2224105|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:47:37Z|INSDC status:public|Submitter Id:ZMP phenotype 32 6 mutant sc 2013 10 17T10:16:31Z 1727412|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 32 clutch 6. A 5 base indexing sequence AACCG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 6 mutant sc 2013 10 17T10:16:31Z 1727412|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#9 8402735 Illumina sequencing of library 8402735 constructed from sample accession ERS360454 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence AACCG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#9.cram cram 1742528760.0 12446634.0 SC RUN 11387 7#9 0:65 1:75 A:499217379;C:275596030;G:308658796;T:658863705;N:192850 65 75     499217379 275596030 308658796 658863705 192850 ERX415649 ERS360454 ERA291793 SC Wellcome Sanger Institute 2 0.47714 0.7933 0.18644 0.21978 0.94194 0.78892 0.71975 0.66845 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9445 9445 ERR449276 ERX415648 ERS360453 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224104 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:50:07Z|External Id:SAMEA2224104|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:50:07Z|INSDC status:public|Submitter Id:ZMP phenotype 32 5 sibling sc 2013 10 17T10:16:30Z 1727411|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 5. A 5 base indexing sequence CGGCC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 5 sibling sc 2013 10 17T10:16:30Z 1727411|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#8 8402734 Illumina sequencing of library 8402734 constructed from sample accession ERS360453 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence CGGCC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#8.cram cram 1534020880.0 10957292.0 SC RUN 11387 7#8 0:65 1:75 A:431039117;C:268322453;G:297909126;T:536589650;N:160534 65 75     431039117 268322453 297909126 536589650 160534 ERX415648 ERS360453 ERA291793 SC Wellcome Sanger Institute 2 0.51567 0.81267 0.15976 0.2033 0.94231 0.8017 0.78741 0.71898 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9446 9446 ERR449275 ERX415647 ERS360452 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224103 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:49:06Z|External Id:SAMEA2224103|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:49:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 5 mutant sc 2013 10 17T10:16:29Z 1727410|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 32 clutch 5. A 5 base indexing sequence GCCGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 5 mutant sc 2013 10 17T10:16:29Z 1727410|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#7 8402733 Illumina sequencing of library 8402733 constructed from sample accession ERS360452 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence GCCGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#7.cram cram 1333667440.0 9526196.0 SC RUN 11387 7#7 0:65 1:75 A:379235090;C:223101765;G:246420939;T:484761442;N:148204 65 75     379235090 223101765 246420939 484761442 148204 ERX415647 ERS360452 ERA291793 SC Wellcome Sanger Institute 2 0.49006 0.79941 0.17453 0.21847 0.91873 0.79421 0.7676 0.70001 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9447 9447 ERR449274 ERX415646 ERS360451 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224102 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:47:37Z|External Id:SAMEA2224102|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:47:37Z|INSDC status:public|Submitter Id:ZMP phenotype 32 4 sibling sc 2013 10 17T10:16:28Z 1727409|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 4. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 4 sibling sc 2013 10 17T10:16:28Z 1727409|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#6 8402732 Illumina sequencing of library 8402732 constructed from sample accession ERS360451 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#6.cram cram 1740714500.0 12433675.0 SC RUN 11387 7#6 0:65 1:75 A:504383162;C:272268453;G:305762458;T:658107476;N:192951 65 75     504383162 272268453 305762458 658107476 192951 ERX415646 ERS360451 ERA291793 SC Wellcome Sanger Institute 2 0.47401 0.77585 0.1821 0.20183 0.91575 0.78902 0.75836 0.667 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9448 9448 ERR449273 ERX415645 ERS360450 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224101 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:50:06Z|External Id:SAMEA2224101|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:50:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 4 mutant sc 2013 10 17T10:16:27Z 1727408|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype32 clutch 4. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 4 mutant sc 2013 10 17T10:16:27Z 1727408|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#5 8402731 Illumina sequencing of library 8402731 constructed from sample accession ERS360450 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#5.cram cram 1603129080.0 11450922.0 SC RUN 11387 7#5 0:65 1:75 A:451849643;C:268276450;G:296295714;T:586532852;N:174421 65 75     451849643 268276450 296295714 586532852 174421 ERX415645 ERS360450 ERA291793 SC Wellcome Sanger Institute 2 0.46689 0.80616 0.15782 0.20368 0.91898 0.79135 0.82822 0.68929 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9449 9449 ERR449272 ERX415644 ERS360449 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224100 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:49:06Z|External Id:SAMEA2224100|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:49:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 3 sibling sc 2013 10 17T10:16:26Z 1727407|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 3. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 3 sibling sc 2013 10 17T10:16:26Z 1727407|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#4 8402730 Illumina sequencing of library 8402730 constructed from sample accession ERS360449 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#4.cram cram 1802992520.0 12878518.0 SC RUN 11387 7#4 0:65 1:75 A:516310065;C:299873309;G:329844127;T:656768910;N:196109 65 75     516310065 299873309 329844127 656768910 196109 ERX415644 ERS360449 ERA291793 SC Wellcome Sanger Institute 2 0.47529 0.79506 0.18042 0.22024 0.92581 0.789 0.38657 0.67677 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9450 9450 ERR449271 ERX415643 ERS360448 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224099 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:47:37Z|External Id:SAMEA2224099|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:47:37Z|INSDC status:public|Submitter Id:ZMP phenotype 32 3 mutant sc 2013 10 17T10:16:24Z 1727406|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 32 clutch 3. A 5 base indexing sequence CAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 3 mutant sc 2013 10 17T10:16:24Z 1727406|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#3 8402729 Illumina sequencing of library 8402729 constructed from sample accession ERS360448 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#3.cram cram 1591892540.0 11370661.0 SC RUN 11387 7#3 0:65 1:75 A:462434997;C:258379332;G:286729359;T:584169613;N:179239 65 75     462434997 258379332 286729359 584169613 179239 ERX415643 ERS360448 ERA291793 SC Wellcome Sanger Institute 2 0.44622 0.75888 0.18225 0.22062 0.93099 0.79644 0.72806 0.63766 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9451 9451 ERR449270 ERX415642 ERS360447 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224098 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:50:06Z|External Id:SAMEA2224098|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:50:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 2 sibling sc 2013 10 17T10:16:23Z 1727405|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 32 clutch 2. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 2 sibling sc 2013 10 17T10:16:23Z 1727405|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#2 8402728 Illumina sequencing of library 8402728 constructed from sample accession ERS360447 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#2.cram cram 1203547800.0 8596770.0 SC RUN 11387 7#2 0:65 1:75 A:348159098;C:198653981;G:215450053;T:441147133;N:137535 65 75     348159098 198653981 215450053 441147133 137535 ERX415642 ERS360447 ERA291793 SC Wellcome Sanger Institute 2 0.45272 0.75981 0.18975 0.22407 0.92393 0.78904 0.78502 0.64858 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9452 9452 ERR449269 ERX415641 ERS360446 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2224097 SC ArrayExpress DevelopmentalStage:Hatching long pec pec fin ZFS:0000033 ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 03 04T09:16:47Z|ENA LAST UPDATE:2018 03 08T16:49:06Z|External Id:SAMEA2224097|INSDC center name:SC|INSDC first public:2014 03 04T09:16:47Z|INSDC last update:2018 03 08T16:49:06Z|INSDC status:public|Submitter Id:ZMP phenotype 32 2 mutant sc 2013 10 17T10:16:20Z 1727404|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 32 clutch 2. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph32|sample name:ZMP phenotype 32 2 mutant sc 2013 10 17T10:16:20Z 1727404|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 11387 7#1 8402727 Illumina sequencing of library 8402727 constructed from sample accession ERS360446 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 11387 7. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 03 04|ENA LAST UPDATE:2018 11 16 11387_7#1.cram cram 1021283760.0 7294884.0 SC RUN 11387 7#1 0:65 1:75 A:291284585;C:172471251;G:184694883;T:372722950;N:110091 65 75     291284585 172471251 184694883 372722950 110091 ERX415641 ERS360446 ERA291793 SC Wellcome Sanger Institute 2 0.4834 0.79622 0.17465 0.19508 0.93099 0.79293 0.3482 0.69184 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-03-04 Hatching Embryo Whole Organism All anatomical structures
9453 9453 ERR411520 ERX377881 ERS345935 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177823 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177823|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 29 4 sibling sc 2013 09 04T09:06:44Z 1687337|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 29 clutch 4. A 5 base indexing sequence CGGCC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 4 sibling sc 2013 09 04T09:06:44Z 1687337|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#8 8117841 Illumina sequencing of library 8117841 constructed from sample accession ERS345935 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence CGGCC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#8.cram cram 2068529120.0 14775208.0 SC RUN 10828 4#8 0:65 1:75 A:580571887;C:349666664;G:380231352;T:757680083;N:379134 65 75     580571887 349666664 380231352 757680083 379134 ERX377881 ERS345935 ERA281389 SC Wellcome Sanger Institute 2 0.6576 0.82778 0.22671 0.21704 0.93645 0.78096 0.58041 0.64064 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9454 9454 ERR411519 ERX377880 ERS345934 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177822 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177822|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 29 4 mutant sc 2013 09 04T09:06:43Z 1687336|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 29 clutch 4. A 5 base indexing sequence GCCGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 4 mutant sc 2013 09 04T09:06:43Z 1687336|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#7 8117840 Illumina sequencing of library 8117840 constructed from sample accession ERS345934 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence GCCGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#7.cram cram 2229030720.0 15921648.0 SC RUN 10828 4#7 0:65 1:75 A:626077116;C:369866577;G:405813177;T:826849703;N:424147 65 75     626077116 369866577 405813177 826849703 424147 ERX377880 ERS345934 ERA281389 SC Wellcome Sanger Institute 2 0.57902 0.82726 0.19647 0.22192 0.91719 0.78068 0.64879 0.64827 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9455 9455 ERR411518 ERX377879 ERS345933 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177821 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177821|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 29 3 sibling sc 2013 09 04T09:06:41Z 1687335|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 29 clutch 3. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 3 sibling sc 2013 09 04T09:06:41Z 1687335|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#6 8117839 Illumina sequencing of library 8117839 constructed from sample accession ERS345933 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#6.cram cram 2261757540.0 16155411.0 SC RUN 10828 4#6 0:65 1:75 A:644035846;C:352463346;G:395230467;T:869601223;N:426658 65 75     644035846 352463346 395230467 869601223 426658 ERX377879 ERS345933 ERA281389 SC Wellcome Sanger Institute 2 0.57721 0.80323 0.2175 0.21718 0.90974 0.77607 0.58456 0.61173 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9456 9456 ERR411517 ERX377878 ERS345932 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177820 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177820|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 29 3 mutant sc 2013 09 04T09:06:40Z 1687334|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 29 clutch 3. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 3 mutant sc 2013 09 04T09:06:40Z 1687334|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#5 8117838 Illumina sequencing of library 8117838 constructed from sample accession ERS345932 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#5.cram cram 2906550780.0 20761077.0 SC RUN 10828 4#5 0:65 1:75 A:844167483;C:462548849;G:528911578;T:1070381026;N:541844 65 75     844167483 462548849 528911578 1070381026 541844 ERX377878 ERS345932 ERA281389 SC Wellcome Sanger Institute 2 0.56536 0.7561 0.2433 0.22981 0.91279 0.79437 0.65013 0.62988 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9457 9457 ERR411516 ERX377877 ERS345931 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177819 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177819|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 29 2 sibling sc 2013 09 04T09:06:39Z 1687333|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 29 clutch 2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 2 sibling sc 2013 09 04T09:06:39Z 1687333|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#4 8117837 Illumina sequencing of library 8117837 constructed from sample accession ERS345931 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#4.cram cram 2467073420.0 17621953.0 SC RUN 10828 4#4 0:65 1:75 A:717652463;C:397306216;G:444723214;T:906931704;N:459823 65 75     717652463 397306216 444723214 906931704 459823 ERX377877 ERS345931 ERA281389 SC Wellcome Sanger Institute 2 0.54055 0.78203 0.20409 0.22598 0.93058 0.78703 0.63257 0.62381 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9458 9458 ERR411515 ERX377876 ERS345930 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177818 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177818|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 29 2 mutant sc 2013 09 04T09:06:37Z 1687332|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 29 clutch 2. A 5 base indexing sequence CAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 2 mutant sc 2013 09 04T09:06:37Z 1687332|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#3 8117836 Illumina sequencing of library 8117836 constructed from sample accession ERS345930 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#3.cram cram 2941975540.0 21014111.0 SC RUN 10828 4#3 0:65 1:75 A:837729382;C:468816932;G:515245346;T:1119626989;N:556891 65 75     837729382 468816932 515245346 1119626989 556891 ERX377876 ERS345930 ERA281389 SC Wellcome Sanger Institute 2 0.6247 0.78642 0.25109 0.23275 0.93235 0.78983 0.50562 0.62126 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9459 9459 ERR411514 ERX377875 ERS345929 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177817 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177817|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 29 1 sibling sc 2013 09 04T09:06:36Z 1687331|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 29 clutch 1. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 1 sibling sc 2013 09 04T09:06:36Z 1687331|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#2 8117835 Illumina sequencing of library 8117835 constructed from sample accession ERS345929 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#2.cram cram 2223095140.0 15879251.0 SC RUN 10828 4#2 0:65 1:75 A:645763662;C:353009980;G:389178180;T:834720101;N:423217 65 75     645763662 353009980 389178180 834720101 423217 ERX377875 ERS345929 ERA281389 SC Wellcome Sanger Institute 2 0.55361 0.77433 0.22997 0.23614 0.9278 0.7824 0.57593 0.60708 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9460 9460 ERR411513 ERX377874 ERS345928 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177816 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177816|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 29 1 mutant sc 2013 09 04T09:06:35Z 1687330|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 29 clutch 1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 1 mutant sc 2013 09 04T09:06:35Z 1687330|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 4#1 8117834 Illumina sequencing of library 8117834 constructed from sample accession ERS345928 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_4#1.cram cram 2000299140.0 14287851.0 SC RUN 10828 4#1 0:65 1:75 A:569214568;C:332821177;G:360751529;T:737141071;N:370795 65 75     569214568 332821177 360751529 737141071 370795 ERX377874 ERS345928 ERA281389 SC Wellcome Sanger Institute 2 0.57341 0.81739 0.21272 0.23429 0.93588 0.78973 0.66489 0.66364 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9461 9461 ERR411512 ERX377873 ERS345927 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177815 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177815|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 27 5 sibling sc 2013 09 04T09:06:34Z 1687329|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 5. A 5 base indexing sequence ACGGG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 5 sibling sc 2013 09 04T09:06:34Z 1687329|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#10 8117833 Illumina sequencing of library 8117833 constructed from sample accession ERS345927 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence ACGGG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#10.cram cram 1763062700.0 12593305.0 SC RUN 10828 3#10 0:65 1:75 A:491937953;C:302986445;G:310267234;T:657639130;N:231938 65 75     491937953 302986445 310267234 657639130 231938 ERX377873 ERS345927 ERA281389 SC Wellcome Sanger Institute 2 0.59861 0.83765 0.22006 0.25157 0.93296 0.77922 0.66117 0.62822 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9462 9462 ERR411511 ERX377872 ERS345926 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177814 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177814|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 27 5 mutant sc 2013 09 04T09:06:33Z 1687328|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 27 clutch 5. A 5 base indexing sequence AACCG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 5 mutant sc 2013 09 04T09:06:33Z 1687328|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#9 8117832 Illumina sequencing of library 8117832 constructed from sample accession ERS345926 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence AACCG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#9.cram cram 1765590120.0 12611358.0 SC RUN 10828 3#9 0:65 1:75 A:493076165;C:278466387;G:308689934;T:685125891;N:231743 65 75     493076165 278466387 308689934 685125891 231743 ERX377872 ERS345926 ERA281389 SC Wellcome Sanger Institute 2 0.63668 0.81233 0.26728 0.24835 0.94065 0.77999 0.48367 0.6128 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9463 9463 ERR411510 ERX377871 ERS345925 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177813 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177813|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 27 4 sibling sc 2013 09 04T09:06:31Z 1687327|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 4. A 5 base indexing sequence CGGCC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 4 sibling sc 2013 09 04T09:06:31Z 1687327|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#8 8117831 Illumina sequencing of library 8117831 constructed from sample accession ERS345925 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence CGGCC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#8.cram cram 1940349880.0 13859642.0 SC RUN 10828 3#8 0:65 1:75 A:536692060;C:340946430;G:373404619;T:689056554;N:250217 65 75     536692060 340946430 373404619 689056554 250217 ERX377871 ERS345925 ERA281389 SC Wellcome Sanger Institute 2 0.68846 0.8257 0.22357 0.21146 0.939 0.79368 0.62679 0.68959 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9464 9464 ERR411509 ERX377870 ERS345924 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177812 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177812|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 27 4 mutant sc 2013 09 04T09:06:30Z 1687326|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 27 clutch 4. A 5 base indexing sequence GCCGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 4 mutant sc 2013 09 04T09:06:30Z 1687326|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#7 8117830 Illumina sequencing of library 8117830 constructed from sample accession ERS345924 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence GCCGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#7.cram cram 1602404860.0 11445749.0 SC RUN 10828 3#7 0:65 1:75 A:442821777;C:273633852;G:300769136;T:584974582;N:205513 65 75     442821777 273633852 300769136 584974582 205513 ERX377870 ERS345924 ERA281389 SC Wellcome Sanger Institute 2 0.61518 0.84129 0.20001 0.22601 0.91772 0.78825 0.69232 0.68622 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9465 9465 ERR411508 ERX377869 ERS345923 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177811 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177811|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 27 3 sibling sc 2013 09 04T09:06:28Z 1687325|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 3. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 3 sibling sc 2013 09 04T09:06:28Z 1687325|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#6 8117829 Illumina sequencing of library 8117829 constructed from sample accession ERS345923 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#6.cram cram 2540021400.0 18143010.0 SC RUN 10828 3#6 0:65 1:75 A:723410399;C:411957463;G:463681249;T:940641802;N:330487 65 75     723410399 411957463 463681249 940641802 330487 ERX377869 ERS345923 ERA281389 SC Wellcome Sanger Institute 2 0.56256 0.80251 0.19513 0.22375 0.90853 0.78776 0.68647 0.64191 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9466 9466 ERR411507 ERX377868 ERS345922 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177810 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177810|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 27 3 mutant sc 2013 09 04T09:06:27Z 1687324|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 27 clutch 3. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 3 mutant sc 2013 09 04T09:06:27Z 1687324|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#5 8117828 Illumina sequencing of library 8117828 constructed from sample accession ERS345922 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#5.cram cram 1623644120.0 11597458.0 SC RUN 10828 3#5 0:65 1:75 A:462426337;C:268437439;G:307899934;T:584669014;N:211396 65 75     462426337 268437439 307899934 584669014 211396 ERX377868 ERS345922 ERA281389 SC Wellcome Sanger Institute 2 0.59908 0.76274 0.23527 0.22159 0.9107 0.79961 0.6803 0.67051 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9467 9467 ERR411506 ERX377867 ERS345921 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177809 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177809|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 27 2 sibling sc 2013 09 04T09:06:26Z 1687323|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 2 sibling sc 2013 09 04T09:06:26Z 1687323|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#4 8117827 Illumina sequencing of library 8117827 constructed from sample accession ERS345921 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#4.cram cram 2145907820.0 15327913.0 SC RUN 10828 3#4 0:65 1:75 A:601426377;C:363345308;G:401057987;T:779805294;N:272854 65 75     601426377 363345308 401057987 779805294 272854 ERX377867 ERS345921 ERA281389 SC Wellcome Sanger Institute 2 0.58661 0.81565 0.22017 0.23763 0.92502 0.78794 0.64768 0.65622 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9468 9468 ERR411505 ERX377866 ERS345920 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177808 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177808|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 27 2 mutant sc 2013 09 04T09:06:25Z 1687322|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 27 clutch 2. A 5 base indexing sequence CAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 2 mutant sc 2013 09 04T09:06:25Z 1687322|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#3 8117826 Illumina sequencing of library 8117826 constructed from sample accession ERS345920 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#3.cram cram 1757380240.0 12552716.0 SC RUN 10828 3#3 0:65 1:75 A:478341302;C:307236583;G:333324190;T:638249610;N:228555 65 75     478341302 307236583 333324190 638249610 228555 ERX377866 ERS345920 ERA281389 SC Wellcome Sanger Institute 2 0.62699 0.83985 0.23498 0.24823 0.92257 0.78435 0.65367 0.6564 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9469 9469 ERR411504 ERX377865 ERS345919 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177807 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177807|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 27 1 sibling sc 2013 09 04T09:06:23Z 1687321|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 1. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 1 sibling sc 2013 09 04T09:06:23Z 1687321|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#2 8117825 Illumina sequencing of library 8117825 constructed from sample accession ERS345919 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#2.cram cram 1562820420.0 11163003.0 SC RUN 10828 3#2 0:65 1:75 A:425022471;C:271805621;G:293308913;T:572482611;N:200804 65 75     425022471 271805621 293308913 572482611 200804 ERX377865 ERS345919 ERA281389 SC Wellcome Sanger Institute 2 0.5831 0.84041 0.22054 0.23872 0.92178 0.7807 0.65166 0.63031 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9470 9470 ERR411503 ERX377864 ERS345918 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177806 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177806|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 27 1 mutant sc 2013 09 04T09:06:20Z 1687320|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 27 clutch 1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 1 mutant sc 2013 09 04T09:06:20Z 1687320|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 3#1 8117824 Illumina sequencing of library 8117824 constructed from sample accession ERS345918 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_3#1.cram cram 1513743560.0 10812454.0 SC RUN 10828 3#1 0:65 1:75 A:420879727;C:258085795;G:280443389;T:554142905;N:191744 65 75     420879727 258085795 280443389 554142905 191744 ERX377864 ERS345918 ERA281389 SC Wellcome Sanger Institute 2 0.58302 0.83285 0.20056 0.22206 0.93265 0.78963 0.66801 0.67484 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9471 9471 ERR411502 ERX377863 ERS345917 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177805 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177805|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 25 5 sibling sc 2013 09 04T09:01:43Z 1687319|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 25 clutch 5. A 5 base indexing sequence ACGGG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 5 sibling sc 2013 09 04T09:01:43Z 1687319|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#10 8117823 Illumina sequencing of library 8117823 constructed from sample accession ERS345917 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence ACGGG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#10.cram cram 1434495160.0 10246394.0 SC RUN 10828 2#10 0:65 1:75 A:401125376;C:245012813;G:251641186;T:536000750;N:715035 65 75     401125376 245012813 251641186 536000750 715035 ERX377863 ERS345917 ERA281389 SC Wellcome Sanger Institute 2 0.59683 0.83406 0.22761 0.257 0.93387 0.7792 0.6563 0.61751 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9472 9472 ERR411501 ERX377862 ERS345916 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177804 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:05Z|External Id:SAMEA2177804|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:05Z|INSDC status:public|Submitter Id:ZMP phenotype 25 5 mutant sc 2013 09 04T09:01:41Z 1687318|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 5. A 5 base indexing sequence AACCG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 5 mutant sc 2013 09 04T09:01:41Z 1687318|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#9 8117822 Illumina sequencing of library 8117822 constructed from sample accession ERS345916 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence AACCG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#9.cram cram 1644546820.0 11746763.0 SC RUN 10828 2#9 0:65 1:75 A:462460798;C:259586202;G:286855145;T:634807152;N:837523 65 75     462460798 259586202 286855145 634807152 837523 ERX377862 ERS345916 ERA281389 SC Wellcome Sanger Institute 2 0.63298 0.79674 0.27126 0.25232 0.94286 0.78257 0.46693 0.60863 65 75 B B biological fallback assumption illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9473 9473 ERR411500 ERX377861 ERS345915 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177803 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177803|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 25 4 sibling sc 2013 09 04T09:01:40Z 1687317|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 25 clutch 4. A 5 base indexing sequence CGGCC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 4 sibling sc 2013 09 04T09:01:40Z 1687317|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#8 8117821 Illumina sequencing of library 8117821 constructed from sample accession ERS345915 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence CGGCC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#8.cram cram 1219835820.0 8713113.0 SC RUN 10828 2#8 0:65 1:75 A:326639339;C:215436716;G:230349417;T:446819350;N:590998 65 75     326639339 215436716 230349417 446819350 590998 ERX377861 ERS345915 ERA281389 SC Wellcome Sanger Institute 2 0.64745 0.86911 0.22373 0.23159 0.93085 0.77366 0.55065 0.59947 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9474 9474 ERR411499 ERX377860 ERS345914 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177802 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177802|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 25 4 mutant sc 2013 09 04T09:01:39Z 1687316|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 4. A 5 base indexing sequence GCCGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 4 mutant sc 2013 09 04T09:01:39Z 1687316|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#7 8117820 Illumina sequencing of library 8117820 constructed from sample accession ERS345914 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence GCCGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#7.cram cram 1614697840.0 11533556.0 SC RUN 10828 2#7 0:65 1:75 A:448591244;C:271084337;G:296332162;T:597865389;N:824708 65 75     448591244 271084337 296332162 597865389 824708 ERX377860 ERS345914 ERA281389 SC Wellcome Sanger Institute 2 0.57494 0.82179 0.21367 0.23656 0.91648 0.78464 0.57718 0.6328 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9475 9475 ERR411498 ERX377859 ERS345913 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177801 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177801|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 25 3 sibling sc 2013 09 04T09:01:37Z 1687315|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 25 clutch 3. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 3 sibling sc 2013 09 04T09:01:37Z 1687315|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#6 8117819 Illumina sequencing of library 8117819 constructed from sample accession ERS345913 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#6.cram cram 1545045740.0 11036041.0 SC RUN 10828 2#6 0:65 1:75 A:433367720;C:249931724;G:276073670;T:584855498;N:817128 65 75     433367720 249931724 276073670 584855498 817128 ERX377859 ERS345913 ERA281389 SC Wellcome Sanger Institute 2 0.56985 0.80843 0.23075 0.23875 0.90595 0.77747 0.58234 0.58122 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9476 9476 ERR411497 ERX377858 ERS345912 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177800 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177800|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 25 3 mutant sc 2013 09 04T09:01:35Z 1687314|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 3. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 3 mutant sc 2013 09 04T09:01:35Z 1687314|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#5 8117818 Illumina sequencing of library 8117818 constructed from sample accession ERS345912 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#5.cram cram 1889239800.0 13494570.0 SC RUN 10828 2#5 0:65 1:75 A:530658512;C:305902333;G:339442079;T:712244922;N:991954 65 75     530658512 305902333 339442079 712244922 991954 ERX377858 ERS345912 ERA281389 SC Wellcome Sanger Institute 2 0.5637 0.79504 0.2469 0.2382 0.90804 0.78131 0.56739 0.58075 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9477 9477 ERR411496 ERX377857 ERS345911 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177799 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177799|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 25 2 sibling sc 2013 09 04T09:01:34Z 1687313|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 25 clutch 2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 2 sibling sc 2013 09 04T09:01:34Z 1687313|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#4 8117817 Illumina sequencing of library 8117817 constructed from sample accession ERS345911 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#4.cram cram 1668404780.0 11917177.0 SC RUN 10828 2#4 0:65 1:75 A:471577672;C:273135808;G:299779679;T:623084764;N:826857 65 75     471577672 273135808 299779679 623084764 826857 ERX377857 ERS345911 ERA281389 SC Wellcome Sanger Institute 2 0.57712 0.79534 0.22787 0.23178 0.92571 0.77987 0.52971 0.58241 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9478 9478 ERR411495 ERX377856 ERS345910 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177798 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177798|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 25 2 mutant sc 2013 09 04T09:01:33Z 1687312|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 2. A 5 base indexing sequence CAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 2 mutant sc 2013 09 04T09:01:33Z 1687312|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#3 8117816 Illumina sequencing of library 8117816 constructed from sample accession ERS345910 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#3.cram cram 1296869840.0 9263356.0 SC RUN 10828 2#3 0:65 1:75 A:361128586;C:214725756;G:233625080;T:486711673;N:678745 65 75     361128586 214725756 233625080 486711673 678745 ERX377856 ERS345910 ERA281389 SC Wellcome Sanger Institute 2 0.58661 0.81142 0.24612 0.24566 0.92318 0.77812 0.52771 0.57939 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9479 9479 ERR411494 ERX377855 ERS345909 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2177797 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177797|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 25 1 sibling sc 2013 09 04T09:01:31Z 1687311|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 25 clutch 1. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 1 sibling sc 2013 09 04T09:01:31Z 1687311|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#2 8117815 Illumina sequencing of library 8117815 constructed from sample accession ERS345909 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#2.cram cram 1481588780.0 10582777.0 SC RUN 10828 2#2 0:65 1:75 A:415411146;C:242668063;G:261996883;T:560741538;N:771150 65 75     415411146 242668063 261996883 560741538 771150 ERX377855 ERS345909 ERA281389 SC Wellcome Sanger Institute 2 0.55901 0.80993 0.23805 0.24704 0.92301 0.77331 0.53373 0.58264 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9480 9480 ERR411493 ERX377854 ERS345908 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling       Danio rerio SAMEA2177796 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA first public:2014 01 21|ENA last update:2018 03 08|External Id:SAMEA2177796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T15:25:32Z|INSDC status:public|Submitter Id:ZMP phenotype 25 1 mutant sc 2013 09 04T09:01:28Z 1687310|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 1 mutant sc 2013 09 04T09:01:28Z 1687310|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10828 2#1 8117814 Illumina sequencing of library 8117814 constructed from sample accession ERS345908 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 10828_2#1.cram cram 2504132400.0 17886660.0 SC RUN 10828 2#1 0:65 1:75 A:692098832;C:431604575;G:453774267;T:925443351;N:1211375 65 75     692098832 431604575 453774267 925443351 1211375 ERX377854 ERS345908 ERA281389 SC Wellcome Sanger Institute 2 0.56274 0.85198 0.19551 0.22787 0.92521 0.77323 0.59329 0.58054 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2014-01-21 Hatching Embryo Whole Organism All anatomical structures
9481 9481 ERR381750 ERX353996 ERS336316 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167719 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:41Z|External Id:SAMEA2167719|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:41Z|INSDC status:public|Submitter Id:ZMP phenotype 23 3 sibling sc 2013 08 08T15:31:33Z 1677425|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 3. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 3 sibling sc 2013 08 08T15:31:33Z 1677425|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#6 7938305 Illumina sequencing of library 7938305 constructed from sample accession ERS336316 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#6.bam bam 3236191000.0 23115650.0 SC RUN 10638 5#6 0:65 1:75 A:905048059;C:522428506;G:588623006;T:1219554327;N:537102 65 75     905048059 522428506 588623006 1219554327 537102 ERX353996 ERS336316 ERA272628 SC Wellcome Sanger Institute 2 0.60751 0.87144 0.23914 0.29286 0.8772 0.76775 0.67974 0.61828 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9482 9482 ERR381749 ERX353995 ERS336315 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167718 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:42Z|External Id:SAMEA2167718|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:42Z|INSDC status:public|Submitter Id:ZMP phenotype 23 3 mutant sc 2013 08 08T15:31:31Z 1677424|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 3. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 3 mutant sc 2013 08 08T15:31:31Z 1677424|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#5 7938304 Illumina sequencing of library 7938304 constructed from sample accession ERS336315 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#5.bam bam 3086240640.0 22044576.0 SC RUN 10638 5#5 0:65 1:75 A:858859708;C:497082908;G:570479116;T:1159316259;N:502649 65 75     858859708 497082908 570479116 1159316259 502649 ERX353995 ERS336315 ERA272628 SC Wellcome Sanger Institute 2 0.63513 0.86506 0.24598 0.27327 0.89053 0.78196 0.67472 0.65483 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9483 9483 ERR381748 ERX353994 ERS336314 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167717 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:27Z|External Id:SAMEA2167717|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:27Z|INSDC status:public|Submitter Id:ZMP phenotype 23 2 sibling sc 2013 08 08T15:31:30Z 1677423|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 2 sibling sc 2013 08 08T15:31:30Z 1677423|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#4 7938303 Illumina sequencing of library 7938303 constructed from sample accession ERS336314 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#4.bam bam 2955554000.0 21111100.0 SC RUN 10638 5#4 0:65 1:75 A:827752497;C:488639633;G:543291795;T:1095399888;N:470187 65 75     827752497 488639633 543291795 1095399888 470187 ERX353994 ERS336314 ERA272628 SC Wellcome Sanger Institute 2 0.6308 0.86125 0.2668 0.30791 0.89469 0.76834 0.6463 0.62603 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9484 9484 ERR381747 ERX353993 ERS336313 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167716 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:41Z|External Id:SAMEA2167716|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:41Z|INSDC status:public|Submitter Id:ZMP phenotype 23 2 mutant sc 2013 08 08T15:31:29Z 1677422|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 2. A 5 base indexing sequence CAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 2 mutant sc 2013 08 08T15:31:29Z 1677422|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#3 7938302 Illumina sequencing of library 7938302 constructed from sample accession ERS336313 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#3.bam bam 2723287980.0 19452057.0 SC RUN 10638 5#3 0:65 1:75 A:760640782;C:454914631;G:497106341;T:1010176222;N:450004 65 75     760640782 454914631 497106341 1010176222 450004 ERX353993 ERS336313 ERA272628 SC Wellcome Sanger Institute 2 0.64635 0.8637 0.26612 0.30379 0.89278 0.77049 0.6347 0.61388 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9485 9485 ERR381746 ERX353992 ERS336312 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167715 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:42Z|External Id:SAMEA2167715|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:42Z|INSDC status:public|Submitter Id:ZMP phenotype 23 1 sibling sc 2013 08 08T15:31:28Z 1677421|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 1. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 1 sibling sc 2013 08 08T15:31:28Z 1677421|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#2 7938301 Illumina sequencing of library 7938301 constructed from sample accession ERS336312 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#2.bam bam 2706125940.0 19329471.0 SC RUN 10638 5#2 0:65 1:75 A:757761756;C:442220850;G:491702838;T:1014002902;N:437594 65 75     757761756 442220850 491702838 1014002902 437594 ERX353992 ERS336312 ERA272628 SC Wellcome Sanger Institute 2 0.60133 0.85638 0.2583 0.29625 0.89402 0.76765 0.64876 0.61592 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9486 9486 ERR381745 ERX353991 ERS336311 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2167714 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 12 09T10:10:17Z|ENA LAST UPDATE:2018 03 08T16:38:27Z|External Id:SAMEA2167714|INSDC center name:SC|INSDC first public:2013 12 09T10:10:17Z|INSDC last update:2018 03 08T16:38:27Z|INSDC status:public|Submitter Id:ZMP phenotype 23 1 mutant sc 2013 08 08T15:31:25Z 1677420|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph23|sample name:ZMP phenotype 23 1 mutant sc 2013 08 08T15:31:25Z 1677420|scientific name:Danio rerio|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 10638 5#1 7938300 Illumina sequencing of library 7938300 constructed from sample accession ERS336311 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10638 5. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 12 09|ENA LAST UPDATE:2018 11 16 10638_5#1.bam bam 2315930680.0 16542362.0 SC RUN 10638 5#1 0:65 1:75 A:647300102;C:376179369;G:416954507;T:875134531;N:362171 65 75     647300102 376179369 416954507 875134531 362171 ERX353991 ERS336311 ERA272628 SC Wellcome Sanger Institute 2 0.62243 0.88863 0.24071 0.28376 0.90033 0.77021 0.31673 0.63266 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-12-09 Hatching Embryo Whole Organism All anatomical structures
9495 9495 ERR340748 ERX313597 ERS220817 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2055817 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:18:59Z|External Id:SAMEA2055817|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:18:59Z|INSDC status:public|Submitter Id:ZMP phenotype 10 3 sibling sc 2013 03 07T09:41:25Z 1580262|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 10 clutch3. A 5 base indexing sequence CAAGA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 3 sibling sc 2013 03 07T09:41:25Z 1580262|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#6 6856401 Illumina sequencing of library 6856401 constructed from sample accession ERS220817 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence CAAGA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#6.bam bam 5194807940.0 37105771.0 SC RUN 9795 1#6 0:65 1:75 A:1423139565;C:896187783;G:993132952;T:1882065349;N:282291 65 75     1423139565 896187783 993132952 1882065349 282291 ERX313597 ERS220817 ERA250651 SC Wellcome Sanger Institute 2 0.47647 0.88803 0.08884 0.11195 0.88631 0.77889 0.63535 0.57348 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9496 9496 ERR340747 ERX313596 ERS220816 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2058541 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:20:23Z|External Id:SAMEA2058541|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:20:23Z|INSDC status:public|Submitter Id:ZMP phenotype 10 3 mutant sc 2013 03 07T09:41:24Z 1580261|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 10 clutch3. A 5 base indexing sequence CGCAA is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 3 mutant sc 2013 03 07T09:41:24Z 1580261|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#5 6856400 Illumina sequencing of library 6856400 constructed from sample accession ERS220816 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence CGCAA. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#5.bam bam 6097640220.0 43554573.0 SC RUN 9795 1#5 0:65 1:75 A:1667999695;C:1025214789;G:1126883034;T:2277213855;N:328847 65 75     1667999695 1025214789 1126883034 2277213855 328847 ERX313596 ERS220816 ERA250651 SC Wellcome Sanger Institute 2 0.4833 0.88164 0.10034 0.10709 0.89929 0.79058 0.66548 0.59273 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9497 9497 ERR340746 ERX313595 ERS220815 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA1971745 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:19:05Z|External Id:SAMEA1971745|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:19:05Z|INSDC status:public|Submitter Id:ZMP phenotype 10 2 sibling sc 2013 03 07T09:41:23Z 1580260|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 10 clutch2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 2 sibling sc 2013 03 07T09:41:23Z 1580260|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#4 6856399 Illumina sequencing of library 6856399 constructed from sample accession ERS220815 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence GCACG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#4.bam bam 6477801400.0 46270010.0 SC RUN 9795 1#4 0:65 1:75 A:1809423853;C:1142830257;G:1180085335;T:2345115630;N:346325 65 75     1809423853 1142830257 1180085335 2345115630 346325 ERX313595 ERS220815 ERA250651 SC Wellcome Sanger Institute 2 0.45402 0.91964 0.05848 0.08349 0.89268 0.77437 0.66316 0.54863 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9498 9498 ERR340745 ERX313594 ERS220814 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2055816 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:18:59Z|External Id:SAMEA2055816|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:18:59Z|INSDC status:public|Submitter Id:ZMP phenotype 10 2 mutant sc 2013 03 07T09:41:21Z 1580259|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 10 clutch2. A 5 base indexing sequenceCAGAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 2 mutant sc 2013 03 07T09:41:21Z 1580259|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#3 6856398 Illumina sequencing of library 6856398 constructed from sample accession ERS220814 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence CAGAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#3.bam bam 2485144900.0 17751035.0 SC RUN 9795 1#3 0:65 1:75 A:669367111;C:452930653;G:496620194;T:866095599;N:131343 65 75     669367111 452930653 496620194 866095599 131343 ERX313594 ERS220814 ERA250651 SC Wellcome Sanger Institute 2 0.50711 0.84244 0.10894 0.12134 0.90244 0.80144 0.38816 0.6245 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9499 9499 ERR340744 ERX313593 ERS220813 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2058540 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:20:23Z|External Id:SAMEA2058540|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:20:23Z|INSDC status:public|Submitter Id:ZMP phenotype 10 1 sibling sc 2013 03 07T09:41:20Z 1580258|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype10 clutch1. A 5 base indexing sequenceAGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 1 sibling sc 2013 03 07T09:41:20Z 1580258|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#2 6856397 Illumina sequencing of library 6856397 constructed from sample accession ERS220813 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence AGAAG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#2.bam bam 2620918020.0 18720843.0 SC RUN 9795 1#2 0:65 1:75 A:721085240;C:459705275;G:501075402;T:938914582;N:137521 65 75     721085240 459705275 501075402 938914582 137521 ERX313593 ERS220813 ERA250651 SC Wellcome Sanger Institute 2 0.4709 0.82951 0.10745 0.11822 0.89217 0.77916 0.62119 0.58753 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9500 9500 ERR340743 ERX313592 ERS220812 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2055986 SC ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:19:05Z|External Id:SAMEA2055986|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:19:05Z|INSDC status:public|Submitter Id:ZMP phenotype 10 1 mutant sc 2013 03 07T09:41:16Z 1580257|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 10 clutch1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 1 mutant sc 2013 03 07T09:41:16Z 1580257|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9795 1#1 6856396 Illumina sequencing of library 6856396 constructed from sample accession ERS220812 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence GAGGC. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9795_1#1.bam bam 3267955460.0 23342539.0 SC RUN 9795 1#1 0:65 1:75 A:905522304;C:588188974;G:630026213;T:1144055678;N:162291 65 75     905522304 588188974 630026213 1144055678 162291 ERX313592 ERS220812 ERA250651 SC Wellcome Sanger Institute 2 0.48798 0.85753 0.08495 0.10941 0.91603 0.80594 0.69885 0.67709 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9569 9569 ERR340674 ERX313523 ERS225224 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA2059376 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:20:47Z|External Id:SAMEA2059376|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:20:47Z|INSDC status:public|Submitter Id:ZMP phenotype 13 5 sibling sc 2013 03 25T15:42:26Z 1603267|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 13 clutch 5. A 5 base indexing sequence ACGGG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph13|sample name:ZMP phenotype 13 5 sibling sc 2013 03 25T15:42:26Z 1603267|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9590 8#10 7050302 Illumina sequencing of library 7050302 constructed from sample accession ERS225224 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9590 8. This submission includes reads tagged with the sequence ACGGG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9590_8#10.bam bam 1840202840.0 13144306.0 SC RUN 9590 8#10 0:65 1:75 A:539709867;C:312845844;G:347649064;T:638903862;N:1094203 65 75     539709867 312845844 347649064 638903862 1094203 ERX313523 ERS225224 ERA250651 SC Wellcome Sanger Institute 2 0.48826 0.75412 0.17848 0.20465 0.93563 0.79659 0.65632 0.66097 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures
9570 9570 ERR340673 ERX313522 ERS225223 ERP001656 PRJEB3181 Transcriptome profiling of mutants from the zebrafish genome project Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling         SAMEA1972389 SC ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:20:47Z|External Id:SAMEA1972389|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:20:47Z|INSDC status:public|Submitter Id:ZMP phenotype 13 5 mutant sc 2013 03 25T15:42:25Z 1603266|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 13 clutch 5. A 5 base indexing sequence AACCG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph13|sample name:ZMP phenotype 13 5 mutant sc 2013 03 25T15:42:25Z 1603266|scientific name:Danio rerio|strain:mixed                 1 SC EXP 9590 8#9 7050301 Illumina sequencing of library 7050301 constructed from sample accession ERS225223 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9590 8. This submission includes reads tagged with the sequence AACCG. qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP001656 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 9590_8#9.bam bam 1897906220.0 13556473.0 SC RUN 9590 8#9 0:65 1:75 A:551846148;C:302042386;G:358998936;T:683903340;N:1115410 65 75     551846148 302042386 358998936 683903340 1115410 ERX313522 ERS225223 ERA250651 SC Wellcome Sanger Institute 2 0.54092 0.76684 0.22879 0.24327 0.93212 0.78535 0.5663 0.59117 65 75 B B mate1-mate2 similar by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2013-09-16 Hatching Embryo Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;