metadata: run_metadata: 18 rows where devstage_curation = "Hatching" and technology = "detct"

18 rows where devstage_curation = "Hatching" and technology = "detct"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.alias	sample.centername	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
14961	14961	ERR273891	ERX248167	ERS195627	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886541	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886541\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#12	6469781	Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CTTGTA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#12.bam	bam	2310315300.0	15402102.0	SC RUN 9217 8#12	0:75 1:75	A:633594099;C:528401095;G:519606107;T:627942641;N:771358	75	75	633594099	528401095	519606107	627942641	771358	ERX248167	ERS195627	ERA212581	SC	Wellcome Sanger Institute	2	0.94121	0.94009	0.12841	0.12876	0.67614	0.67748	0.46095	0.46798	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14962	14962	ERR273890	ERX248166	ERS195626	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886538	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886538\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#11	6469780	Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GGCTAC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#11.bam	bam	2197512300.0	14650082.0	SC RUN 9217 8#11	0:75 1:75	A:605841388;C:499071036;G:493858260;T:598012836;N:728780	75	75	605841388	499071036	493858260	598012836	728780	ERX248166	ERS195626	ERA212581	SC	Wellcome Sanger Institute	2	0.93682	0.93652	0.14468	0.14508	0.67714	0.67886	0.45342	0.44383	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14963	14963	ERR273889	ERX248165	ERS195625	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886532	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886532\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#10	6469779	Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence TAGCTT.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#10.bam	bam	1518899700.0	10125998.0	SC RUN 9217 8#10	0:75 1:75	A:412046756;C:352073795;G:347037471;T:407229340;N:512338	75	75	412046756	352073795	347037471	407229340	512338	ERX248165	ERS195625	ERA212581	SC	Wellcome Sanger Institute	2	0.94329	0.9435	0.1358	0.13787	0.68298	0.68436	0.47871	0.47678	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14964	14964	ERR273888	ERX248164	ERS195624	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886539	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886539\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#9	6469778	Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence GATCAG.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#9.bam	bam	1605688950.0	10704593.0	SC RUN 9217 8#9	0:75 1:75	A:439236098;C:368742547;G:361235163;T:435943464;N:531678	75	75	439236098	368742547	361235163	435943464	531678	ERX248164	ERS195624	ERA212581	SC	Wellcome Sanger Institute	2	0.93915	0.93882	0.13923	0.13977	0.67468	0.67663	0.4507	0.45363	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14965	14965	ERR273887	ERX248163	ERS195623	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886537	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886537\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#8	6469777	Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence ACTTGA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#8.bam	bam	2569295250.0	17128635.0	SC RUN 9217 8#8	0:75 1:75	A:687367533;C:603633435;G:600271276;T:677164225;N:858781	75	75	687367533	603633435	600271276	677164225	858781	ERX248163	ERS195623	ERA212581	SC	Wellcome Sanger Institute	2	0.94399	0.94343	0.13238	0.13278	0.69047	0.69303	0.50113	0.50267	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14966	14966	ERR273886	ERX248162	ERS195622	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886543	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886543\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 8#7	6469776	Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 8. This submission includes reads tagged with the sequence CAGATC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_8#7.bam	bam	2611623450.0	17410823.0	SC RUN 9217 8#7	0:75 1:75	A:719995222;C:591279714;G:590332226;T:709144896;N:871392	75	75	719995222	591279714	590332226	709144896	871392	ERX248162	ERS195622	ERA212581	SC	Wellcome Sanger Institute	2	0.93603	0.93598	0.14074	0.14096	0.68132	0.68367	0.46283	0.46253	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14979	14979	ERR273873	ERX248149	ERS195627	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886541	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886541\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#12	6469781	Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CTTGTA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#12.bam	bam	2303214000.0	15354760.0	SC RUN 9217 7#12	0:75 1:75	A:631760548;C:526687829;G:518000584;T:625999378;N:765661	75	75	631760548	526687829	518000584	625999378	765661	ERX248149	ERS195627	ERA212581	SC	Wellcome Sanger Institute	2	0.94136	0.94026	0.12751	0.12827	0.67758	0.67969	0.46751	0.46964	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14980	14980	ERR273872	ERX248148	ERS195626	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886538	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886538\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#11	6469780	Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GGCTAC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#11.bam	bam	2191529250.0	14610195.0	SC RUN 9217 7#11	0:75 1:75	A:604404279;C:497500521;G:492517483;T:596386777;N:720190	75	75	604404279	497500521	492517483	596386777	720190	ERX248148	ERS195626	ERA212581	SC	Wellcome Sanger Institute	2	0.93745	0.93601	0.14587	0.14608	0.67771	0.67996	0.46712	0.459	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14981	14981	ERR273871	ERX248147	ERS195625	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886532	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886532\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#10	6469779	Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence TAGCTT.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#10.bam	bam	1513703550.0	10091357.0	SC RUN 9217 7#10	0:75 1:75	A:410787377;C:350732170;G:345859465;T:405824283;N:500255	75	75	410787377	350732170	345859465	405824283	500255	ERX248147	ERS195625	ERA212581	SC	Wellcome Sanger Institute	2	0.9427	0.94284	0.13663	0.13836	0.68343	0.68586	0.47702	0.47094	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14982	14982	ERR273870	ERX248146	ERS195624	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886539	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886539\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#9	6469778	Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence GATCAG.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#9.bam	bam	1600259850.0	10668399.0	SC RUN 9217 7#9	0:75 1:75	A:437913621;C:367325609;G:360019868;T:434465844;N:534908	75	75	437913621	367325609	360019868	434465844	534908	ERX248146	ERS195624	ERA212581	SC	Wellcome Sanger Institute	2	0.93889	0.93805	0.13842	0.13935	0.67594	0.67758	0.45596	0.45934	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14983	14983	ERR273869	ERX248145	ERS195623	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886537	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886537\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#8	6469777	Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence ACTTGA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#8.bam	bam	2562061800.0	17080412.0	SC RUN 9217 7#8	0:75 1:75	A:685640040;C:601716737;G:598722783;T:675132099;N:850141	75	75	685640040	601716737	598722783	675132099	850141	ERX248145	ERS195623	ERA212581	SC	Wellcome Sanger Institute	2	0.94423	0.94296	0.13223	0.13258	0.69071	0.69301	0.49301	0.49702	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14984	14984	ERR273868	ERX248144	ERS195622	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886543	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886543\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9217 7#7	6469776	Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9217 7. This submission includes reads tagged with the sequence CAGATC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 13\|ENA LAST UPDATE:2018 11 16	9217_7#7.bam	bam	2604324000.0	17362160.0	SC RUN 9217 7#7	0:75 1:75	A:718114710;C:589440349;G:588811966;T:707085884;N:871091	75	75	718114710	589440349	588811966	707085884	871091	ERX248144	ERS195622	ERA212581	SC	Wellcome Sanger Institute	2	0.93727	0.93671	0.14108	0.14176	0.68316	0.6854	0.46272	0.46476	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14997	14997	ERR271390	ERX245617	ERS195627	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886541	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886541\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 sibling sc 2012 11 27T16:31:03Z 1518914\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#12	6469781	Illumina sequencing of library 6469781 constructed from sample accession ERS195627 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CTTGTA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#12.bam	bam	1878846900.0	12525646.0	SC RUN 9201 6#12	0:75 1:75	A:514561892;C:429839016;G:422805267;T:510698286;N:942439	75	75	514561892	429839016	422805267	510698286	942439	ERX245617	ERS195627	ERA211703	SC	Wellcome Sanger Institute	2	0.94133	0.94	0.12875	0.12884	0.67795	0.67971	0.46257	0.45975	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14998	14998	ERR271389	ERX245616	ERS195626	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886538	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886538\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 3 mutant sc 2012 11 27T16:31:02Z 1518913\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#11	6469780	Illumina sequencing of library 6469780 constructed from sample accession ERS195626 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GGCTAC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#11.bam	bam	1791468750.0	11943125.0	SC RUN 9201 6#11	0:75 1:75	A:493236493;C:407035217;G:402855646;T:487439825;N:901569	75	75	493236493	407035217	402855646	487439825	901569	ERX245616	ERS195626	ERA211703	SC	Wellcome Sanger Institute	2	0.93754	0.9356	0.14614	0.14647	0.67724	0.67856	0.45561	0.44999	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
14999	14999	ERR271388	ERX245615	ERS195625	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886532	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886532\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 sibling sc 2012 11 27T16:31:01Z 1518912\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#10	6469779	Illumina sequencing of library 6469779 constructed from sample accession ERS195625 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence TAGCTT.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#10.bam	bam	1233052650.0	8220351.0	SC RUN 9201 6#10	0:75 1:75	A:334146519;C:285833801;G:281824558;T:330623398;N:624374	75	75	334146519	285833801	281824558	330623398	624374	ERX245615	ERS195625	ERA211703	SC	Wellcome Sanger Institute	2	0.94305	0.94176	0.13533	0.13577	0.68292	0.68286	0.476	0.47409	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
15000	15000	ERR271387	ERX245614	ERS195624	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886539	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:35Z\|External Id:SAMEA1886539\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:35Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 2 mutant sc 2012 11 27T16:30:59Z 1518911\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#9	6469778	Illumina sequencing of library 6469778 constructed from sample accession ERS195624 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence GATCAG.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#9.bam	bam	1307158050.0	8714387.0	SC RUN 9201 6#9	0:75 1:75	A:357170484;C:300163456;G:294213417;T:354956106;N:654587	75	75	357170484	300163456	294213417	354956106	654587	ERX245614	ERS195624	ERA211703	SC	Wellcome Sanger Institute	2	0.93911	0.93751	0.13707	0.13723	0.67379	0.67564	0.46345	0.46034	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
15001	15001	ERR271386	ERX245613	ERS195623	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886537	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886537\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|common name:zebrafish\|sample description:Morphologically normal sibling zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 sibling sc 2012 11 27T16:30:58Z 1518910\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#8	6469777	Illumina sequencing of library 6469777 constructed from sample accession ERS195623 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence ACTTGA.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#8.bam	bam	2093759100.0	13958394.0	SC RUN 9201 6#8	0:75 1:75	A:559506384;C:491929011;G:489425570;T:551850915;N:1047220	75	75	559506384	491929011	489425570	551850915	1047220	ERX245613	ERS195623	ERA211703	SC	Wellcome Sanger Institute	2	0.94432	0.94329	0.13058	0.13185	0.69041	0.69114	0.49144	0.5038	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures
15002	15002	ERR271385	ERX245612	ERS195622	ERP001991	PRJEB673	RNAseq vs DeTCT comparison	RNAseq_vs_DeTCT_comparison-sc-2012-11-27T16:22:06Z-2445	Transcriptome Analysis	Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos for transcriptome profiling	SAMEA1886543	SC	ArrayExpress DevelopmentalStage:Hatching Long pec ZFS:0000033\|ArrayExpress OrganismPart:Whole Embryo\|ArrayExpress Species:Danio rerio\|ENA FIRST PUBLIC:2013 05 07T10:06:35Z\|ENA LAST UPDATE:2018 03 08T16:09:24Z\|External Id:SAMEA1886543\|INSDC center name:SC\|INSDC first public:2013 05 07T10:06:35Z\|INSDC last update:2018 03 08T16:09:24Z\|INSDC status:public\|Submitter Id:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|common name:zebrafish\|sample description:Morphologically abnormal zebrafish embryos from zmp ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph8\|sample name:ZMP phenotype 8 1 mutant sc 2012 11 27T16:30:57Z 1518909\|scientific name:Danio rerio\|strain:mixed	1	SC EXP 9201 6#7	6469776	Illumina sequencing of library 6469776 constructed from sample accession ERS195622 for study accession ERP001991. This is part of an Illumina multiplexed sequencing run 9201 6. This submission includes reads tagged with the sequence CAGATC.	Illumina cDNA protocol	RNA-Seq	TRANSCRIPTOMIC	cDNA	PAIRED	ILLUMINA	Illumina HiSeq 2000	ERP001991	Illumina HiSeq 2000 paired end sequencing	ENA FIRST PUBLIC:2013 05 07\|ENA LAST UPDATE:2018 11 16	9201_6#7.bam	bam	2119712550.0	14131417.0	SC RUN 9201 6#7	0:75 1:75	A:583700274;C:479941691;G:479373820;T:575634850;N:1061915	75	75	583700274	479941691	479373820	575634850	1061915	ERX245612	ERS195622	ERA211703	SC	Wellcome Sanger Institute	2	0.93815	0.93675	0.14169	0.14181	0.68028	0.68215	0.46227	0.46055	75	75	B	B	biological fallback assumption	illumina	hiseq_era	unknown	cdna_unspecified	unknown	bulk	bulk	detct	United Kingdom	2013-05-07	Hatching	Embryo	Whole Organism	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;