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4,635 rows where devstage_curation = "Gastrula" and experiment.platform = "ILLUMINA"

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experiment.library_selection >10

technology 9

experiment.library_strategy 8

tissue_curation 7

experiment.library_source 2

experiment.library_layout 2

experiment.platform 1

  • ILLUMINA · 4,635 ✖

devstage_curation_coarse 1

devstage_curation 1

  • Gastrula · 4,635 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
60 60 DRR032764 DRX029570 DRS049969 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr shield 2 SAMD00028161   sample name:Dr shield 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028161 DRX029570 Dr shield 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028161       3644397900.0 36443979.0 DRR032764 0:100 1:0 A:986071173;C:842367218;G:837686080;T:978236607;N:36822 100 0     986071173 842367218 837686080 978236607 36822 DRX029570 DRS049969 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92419   0.08269   0.75558   0.47863   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
61 61 DRR032763 DRX029569 DRS049968 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr shield 1 SAMD00028160   sample name:Dr shield 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:shield|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028160 DRX029569 Dr shield 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028160       3834622000.0 38346220.0 DRR032763 0:100 1:0 A:1043352851;C:880011834;G:876775415;T:1034444253;N:37647 100 0     1043352851 880011834 876775415 1034444253 37647 DRX029569 DRS049968 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92305   0.09126   0.75481   0.47587   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
69 69 DRR032755 DRX029561 DRS049960 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr 90epiboly 2 SAMD00028152   sample name:Dr 90epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028152 DRX029561 Dr 90epiboly 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028152       3572358600.0 35723586.0 DRR032755 0:100 1:0 A:971653450;C:821326559;G:816855636;T:962477457;N:45498 100 0     971653450 821326559 816855636 962477457 45498 DRX029561 DRS049960 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92485   0.10642   0.74213   0.47012   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
70 70 DRR032754 DRX029560 DRS049959 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr 90epiboly 1 SAMD00028151   sample name:Dr 90epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:90epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028151 DRX029560 Dr 90epiboly 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028151       3423980500.0 34239805.0 DRR032754 0:100 1:0 A:933088185;C:785251613;G:780911148;T:924686406;N:43148 100 0     933088185 785251613 780911148 924686406 43148 DRX029560 DRS049959 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92436   0.10881   0.74255   0.47068   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
73 73 DRR032751 DRX029557 DRS049956 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr 75epiboly 2 SAMD00028148   sample name:Dr 75epiboly 2|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028148 DRX029557 Dr 75epiboly 2 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028148       3252021500.0 32520215.0 DRR032751 0:100 1:0 A:885527595;C:746750899;G:742907892;T:876794123;N:40991 100 0     885527595 746750899 742907892 876794123 40991 DRX029557 DRS049956 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92594   0.10181   0.74862   0.47789   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
74 74 DRR032750 DRX029556 DRS049955 DRP003810 PRJDB3785 EXPANDE project DRP003810 Other EXPression AloNg Development and Evolution EXPANDE project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief taking advantages of Illumina sequencing RNAseq profiles of early to late embryos of 8 chordate species were identified with biological replicates two or more biological replicates.     mRNA extracted from pooled embryos of 100 individuals Dr 75epiboly 1 SAMD00028147   sample name:Dr 75epiboly 1|strain:Riken WT Wild Type|tissue type:whole embryo|dev stage:75epiboly|genotype:wild type|phenotype:wild type|sex:male female and mixed                 Illumina HiSeq 2000 sequencing of SAMD00028147 DRX029556 Dr 75epiboly 1 1 Total RNA QIAGEN RNeasy followed by TruSeq   RNA-Seq TRANSCRIPTOMIC other SINGLE ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>100</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003810 Illumina HiSeq 2000 sequencing of SAMD00028147       3785053700.0 37850537.0 DRR032750 0:100 1:0 A:1029014798;C:870946157;G:867537069;T:1017508684;N:46992 100 0     1029014798 870946157 867537069 1017508684 46992 DRX029556 DRS049955 DRA003460 UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo UT-BS|Lab for embryology, Department of Biological Sciences, University of Tokyo 1 0.92346   0.10046   0.74921   0.47295   100   B   usable mapping rate illumina hiseq_era unknown other trueseq bulk unknown unknown   Japan 2017-09-20 Gastrula Embryo Whole Organism All anatomical structures
3226 3226 ERR1397008 ERX1468267 ERS1021908 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool12 SAMEA3714759 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714759|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:01Z|INSDC status:public|Submitter Id:54aa3340 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGACTCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54aa3340 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#23 15566062 Illumina sequencing of library 15566062 constructed from sample accession ERS1021908 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TTGACTCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#23.cram cram 623088960.0 4792992.0 SC RUN 18715 4#23 0:55 1:75 A:158097127;C:114833210;G:123072472;T:227074183;N:11968 55 75     158097127 114833210 123072472 227074183 11968 ERX1468267 ERS1021908 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25864 0.66461 0.14458 0.14821 0.97581 0.912 0.79633 0.79697 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3227 3227 ERR1397007 ERX1468266 ERS1021907 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool11 SAMEA3714758 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714758|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:43:00Z|INSDC status:public|Submitter Id:54a57850 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCATAGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54a57850 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#22 15566061 Illumina sequencing of library 15566061 constructed from sample accession ERS1021907 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TGCATAGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#22.cram cram 435082310.0 3346787.0 SC RUN 18715 4#22 0:55 1:75 A:104676703;C:87016153;G:90761451;T:152624516;N:3487 55 75     104676703 87016153 90761451 152624516 3487 ERX1468266 ERS1021907 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.21837 0.69232 0.11467 0.22469 0.96966 0.90246 0.71137 0.73395 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3228 3228 ERR1397006 ERX1468265 ERS1021906 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool10 SAMEA3714757 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714757|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:43:00Z|INSDC status:public|Submitter Id:54a09650 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGATACGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54a09650 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#21 15566060 Illumina sequencing of library 15566060 constructed from sample accession ERS1021906 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TGATACGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#21.cram cram 589220450.0 4532465.0 SC RUN 18715 4#21 0:55 1:75 A:137433361;C:118836539;G:121322776;T:211622870;N:4904 55 75     137433361 118836539 121322776 211622870 4904 ERX1468265 ERS1021906 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.21059 0.69963 0.13006 0.27964 0.97218 0.89617 0.6331 0.6777 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3229 3229 ERR1397005 ERX1468264 ERS1021905 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool9 SAMEA3714756 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714756|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:59Z|INSDC status:public|Submitter Id:549bdb60 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:549bdb60 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#20 15566059 Illumina sequencing of library 15566059 constructed from sample accession ERS1021905 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TCGAGCGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#20.cram cram 322242960.0 2478792.0 SC RUN 18715 4#20 0:55 1:75 A:69730009;C:69346499;G:68804637;T:114359392;N:2423 55 75     69730009 69346499 68804637 114359392 2423 ERX1468264 ERS1021905 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.17306 0.73461 0.10635 0.34267 0.97344 0.90155 0.56304 0.46821 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3230 3230 ERR1397004 ERX1468263 ERS1021904 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool8 SAMEA3714755 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714755|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:59Z|INSDC status:public|Submitter Id:54972070 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGAGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54972070 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#19 15566058 Illumina sequencing of library 15566058 constructed from sample accession ERS1021904 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TTGGAGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#19.cram cram 344289140.0 2648378.0 SC RUN 18715 4#19 0:55 1:75 A:74919379;C:74095308;G:73388146;T:121883658;N:2649 55 75     74919379 74095308 73388146 121883658 2649 ERX1468263 ERS1021904 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.21242 0.7218 0.10492 0.26809 0.97088 0.90398 0.68023 0.73198 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3231 3231 ERR1397003 ERX1468262 ERS1021903 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool7 SAMEA3714754 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714754|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:58Z|INSDC status:public|Submitter Id:54923e70 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTGCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54923e70 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#18 15566057 Illumina sequencing of library 15566057 constructed from sample accession ERS1021903 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TCTGCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#18.cram cram 526885190.0 4052963.0 SC RUN 18715 4#18 0:55 1:75 A:122666546;C:105361895;G:109169581;T:189683055;N:4113 55 75     122666546 105361895 109169581 189683055 4113 ERX1468262 ERS1021903 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.29114 0.70778 0.11952 0.21956 0.96747 0.89968 0.78242 0.7549 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3232 3232 ERR1397002 ERX1468261 ERS1021902 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool6 SAMEA3714753 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714753|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:58Z|INSDC status:public|Submitter Id:548d8380 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCTGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:548d8380 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#17 15566056 Illumina sequencing of library 15566056 constructed from sample accession ERS1021902 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TTCTGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#17.cram cram 450353800.0 3464260.0 SC RUN 18715 4#17 0:55 1:75 A:102186121;C:92706381;G:94703271;T:160754528;N:3499 55 75     102186121 92706381 94703271 160754528 3499 ERX1468261 ERS1021902 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.23958 0.71558 0.12516 0.24615 0.96715 0.89702 0.65389 0.54852 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3233 3233 ERR1397001 ERX1468260 ERS1021901 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool5 SAMEA3714752 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714752|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:57Z|INSDC status:public|Submitter Id:5488a180 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTACCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:5488a180 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#16 15566055 Illumina sequencing of library 15566055 constructed from sample accession ERS1021901 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TGTACCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#16.cram cram 534724710.0 4113267.0 SC RUN 18715 4#16 0:55 1:75 A:128590070;C:103874775;G:109289765;T:192961007;N:9093 55 75     128590070 103874775 109289765 192961007 9093 ERX1468260 ERS1021901 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.22128 0.68494 0.105 0.20446 0.96997 0.89706 0.74762 0.76279 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3234 3234 ERR1397000 ERX1468259 ERS1021900 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool4 SAMEA3714751 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714751|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:57Z|INSDC status:public|Submitter Id:5483bf80 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCGTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:5483bf80 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#15 15566054 Illumina sequencing of library 15566054 constructed from sample accession ERS1021900 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TCCGTCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#15.cram cram 586453920.0 4511184.0 SC RUN 18715 4#15 0:55 1:75 A:136970547;C:121970634;G:128865976;T:198636781;N:9982 55 75     136970547 121970634 128865976 198636781 9982 ERX1468259 ERS1021900 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25063 0.70116 0.12564 0.24658 0.97061 0.91752 0.75105 0.77518 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3235 3235 ERR1396999 ERX1468258 ERS1021899 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool3 SAMEA3714750 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714750|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:56Z|INSDC status:public|Submitter Id:547f0490 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGCGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:547f0490 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#14 15566053 Illumina sequencing of library 15566053 constructed from sample accession ERS1021899 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TAAGCGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#14.cram cram 470427100.0 3618670.0 SC RUN 18715 4#14 0:55 1:75 A:108111963;C:96905210;G:98422692;T:166983507;N:3728 55 75     108111963 96905210 98422692 166983507 3728 ERX1468258 ERS1021899 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.20546 0.71615 0.10738 0.26752 0.9696 0.89842 0.67018 0.70626 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3236 3236 ERR1396998 ERX1468257 ERS1021898 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool2 SAMEA3714749 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714749|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:56Z|INSDC status:public|Submitter Id:547a2290 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCGGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:547a2290 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#13 15566052 Illumina sequencing of library 15566052 constructed from sample accession ERS1021898 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TCTCGGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#13.cram cram 821952820.0 6322714.0 SC RUN 18715 4#13 0:55 1:75 A:202904062;C:171470632;G:180041567;T:267530615;N:5944 55 75     202904062 171470632 180041567 267530615 5944 ERX1468257 ERS1021898 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.30231 0.60585 0.185 0.21176 0.97581 0.92681 0.81719 0.79468 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3237 3237 ERR1396997 ERX1468256 ERS1021897 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 pool1 SAMEA3714748 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714748|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:55Z|INSDC status:public|Submitter Id:547567a0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGTTGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:547567a0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#12 15566051 Illumina sequencing of library 15566051 constructed from sample accession ERS1021897 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TGGTTGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#12.cram cram 520224120.0 4001724.0 SC RUN 18715 4#12 0:55 1:75 A:126001329;C:104625897;G:106666649;T:182926560;N:3685 55 75     126001329 104625897 106666649 182926560 3685 ERX1468256 ERS1021897 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2407 0.68721 0.1192 0.21034 0.97011 0.90603 0.77576 0.77039 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3238 3238 ERR1396996 ERX1468255 ERS1021896 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 12 SAMEA3714747 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714747|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:55Z|INSDC status:public|Submitter Id:547085a0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CTTGTACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:547085a0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#11 15566050 Illumina sequencing of library 15566050 constructed from sample accession ERS1021896 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence CTTGTACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#11.cram cram 760238960.0 5847992.0 SC RUN 18715 4#11 0:55 1:75 A:181940493;C:153638313;G:162704686;T:261942911;N:12557 55 75     181940493 153638313 162704686 261942911 12557 ERX1468255 ERS1021896 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.23204 0.70661 0.11555 0.2224 0.97266 0.90993 0.75288 0.68439 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3239 3239 ERR1396995 ERX1468254 ERS1021895 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 11 SAMEA3714746 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714746|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:55Z|INSDC status:public|Submitter Id:546bcab0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGCTACAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:546bcab0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#10 15566049 Illumina sequencing of library 15566049 constructed from sample accession ERS1021895 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence GGCTACAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#10.cram cram 957319870.0 7363999.0 SC RUN 18715 4#10 0:55 1:75 A:231090464;C:194631806;G:205097062;T:326493022;N:7516 55 75     231090464 194631806 205097062 326493022 7516 ERX1468254 ERS1021895 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.19244 0.66543 0.09781 0.21217 0.96972 0.90709 0.69363 0.73924 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3240 3240 ERR1396994 ERX1468253 ERS1021894 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 10 SAMEA3714745 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714745|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:54Z|INSDC status:public|Submitter Id:54670fc0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54670fc0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#9 15566048 Illumina sequencing of library 15566048 constructed from sample accession ERS1021894 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TAGCTTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#9.cram cram 648731330.0 4990241.0 SC RUN 18715 4#9 0:55 1:75 A:147819947;C:135690538;G:141109962;T:224106055;N:4828 55 75     147819947 135690538 141109962 224106055 4828 ERX1468253 ERS1021894 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.21837 0.72252 0.10779 0.27126 0.97469 0.9105 0.75425 0.7429 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3241 3241 ERR1396993 ERX1468252 ERS1021893 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 9 SAMEA3714744 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714744|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:54Z|INSDC status:public|Submitter Id:546254d0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCAGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:546254d0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#8 15566047 Illumina sequencing of library 15566047 constructed from sample accession ERS1021893 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence GATCAGCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#8.cram cram 498761250.0 3836625.0 SC RUN 18715 4#8 0:55 1:75 A:115978622;C:101373316;G:104460950;T:176944568;N:3794 55 75     115978622 101373316 104460950 176944568 3794 ERX1468252 ERS1021893 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.20696 0.70361 0.11655 0.25543 0.96852 0.90045 0.6861 0.71283 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3242 3242 ERR1396992 ERX1468251 ERS1021892 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 8 SAMEA3714743 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714743|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:53Z|INSDC status:public|Submitter Id:545d99e0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACTTGATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:545d99e0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#7 15566046 Illumina sequencing of library 15566046 constructed from sample accession ERS1021892 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence ACTTGATG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#7.cram cram 683049900.0 5254230.0 SC RUN 18715 4#7 0:55 1:75 A:157288970;C:143086232;G:146294376;T:236375109;N:5213 55 75     157288970 143086232 146294376 236375109 5213 ERX1468251 ERS1021892 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.24188 0.71202 0.11744 0.25787 0.96767 0.90449 0.75184 0.7277 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3243 3243 ERR1396991 ERX1468250 ERS1021891 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 7 SAMEA3714742 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714742|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:53Z|INSDC status:public|Submitter Id:5458def0 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CAGATCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:5458def0 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#6 15566045 Illumina sequencing of library 15566045 constructed from sample accession ERS1021891 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence CAGATCTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#6.cram cram 427531520.0 3288704.0 SC RUN 18715 4#6 0:55 1:75 A:97566255;C:88019708;G:92668081;T:149274275;N:3201 55 75     97566255 88019708 92668081 149274275 3201 ERX1468250 ERS1021891 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.20401 0.66839 0.0998 0.252 0.9721 0.91086 0.74733 0.72039 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3244 3244 ERR1396990 ERX1468249 ERS1021890 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 5 SAMEA3714741 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714741|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:52Z|INSDC status:public|Submitter Id:54542400 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACAGTGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:54542400 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#5 15566044 Illumina sequencing of library 15566044 constructed from sample accession ERS1021890 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence ACAGTGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#5.cram cram 852603830.0 6558491.0 SC RUN 18715 4#5 0:55 1:75 A:194002714;C:181643123;G:186032783;T:290918723;N:6487 55 75     194002714 181643123 186032783 290918723 6487 ERX1468249 ERS1021890 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.18562 0.73325 0.09831 0.2837 0.97098 0.91011 0.68654 0.55375 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3245 3245 ERR1396989 ERX1468248 ERS1021889 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 4 SAMEA3714740 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714740|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:52Z|INSDC status:public|Submitter Id:544f6910 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACCACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:544f6910 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#4 15566043 Illumina sequencing of library 15566043 constructed from sample accession ERS1021889 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TGACCACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#4.cram cram 583527490.0 4488673.0 SC RUN 18715 4#4 0:55 1:75 A:131690377;C:123831472;G:127489720;T:200505916;N:10005 55 75     131690377 123831472 127489720 200505916 10005 ERX1468248 ERS1021889 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.19285 0.72553 0.08706 0.21155 0.97394 0.90991 0.78479 0.80415 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3246 3246 ERR1396988 ERX1468247 ERS1021888 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 3 SAMEA3714739 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714739|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:51Z|INSDC status:public|Submitter Id:544a8710 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:544a8710 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#3 15566042 Illumina sequencing of library 15566042 constructed from sample accession ERS1021888 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence TTAGGCAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#3.cram cram 598661050.0 4605085.0 SC RUN 18715 4#3 0:55 1:75 A:140380578;C:121195534;G:123736414;T:213344166;N:4358 55 75     140380578 121195534 123736414 213344166 4358 ERX1468247 ERS1021888 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26238 0.70038 0.12502 0.25123 0.9682 0.89514 0.71366 0.75959 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3247 3247 ERR1396987 ERX1468246 ERS1021887 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 2 SAMEA3714738 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714738|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:42:50Z|INSDC status:public|Submitter Id:5445cc20 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CGATGTTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:5445cc20 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#2 15566041 Illumina sequencing of library 15566041 constructed from sample accession ERS1021887 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence CGATGTTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#2.cram cram 841017190.0 6469363.0 SC RUN 18715 4#2 0:55 1:75 A:197234834;C:177166897;G:184426277;T:282182424;N:6758 55 75     197234834 177166897 184426277 282182424 6758 ERX1468246 ERS1021887 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.22302 0.7467 0.11286 0.25152 0.97297 0.91325 0.69683 0.57514 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3248 3248 ERR1396986 ERX1468245 ERS1021886 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 123 1 1 SAMEA3714737 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula : Shield ZFS:0000019|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714737|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:42:50Z|INSDC status:public|Submitter Id:543c2f30 a001 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 123 clutch 1 collected at gastrula shield stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ATCACGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:543c2f30 a001 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18715 4#1 15566040 Illumina sequencing of library 15566040 constructed from sample accession ERS1021886 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18715 4. This submission includes reads tagged with the sequence ATCACGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18715_4#1.cram cram 926877380.0 7129826.0 SC RUN 18715 4#1 0:55 1:75 A:209328659;C:199687603;G:210375360;T:307469246;N:16512 55 75     209328659 199687603 210375360 307469246 16512 ERX1468245 ERS1021886 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.20039 0.76319 0.11448 0.30846 0.97467 0.91603 0.65969 0.39255 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3321 3321 ERR1396913 ERX1468172 ERS1021741 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool12 SAMEA3714592 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714592|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:32Z|INSDC status:public|Submitter Id:ad77f3d0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGACTCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad77f3d0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#24 15565798 Illumina sequencing of library 15565798 constructed from sample accession ERS1021741 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TTGACTCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#24.cram cram 2368917460.0 18222442.0 SC RUN 18685 7#24 0:55 1:75 A:626655785;C:434149179;G:437500965;T:870254467;N:357064 55 75     626655785 434149179 437500965 870254467 357064 ERX1468172 ERS1021741 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26822 0.66455 0.14843 0.15169 0.96359 0.87298 0.71549 0.68507 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3322 3322 ERR1396912 ERX1468171 ERS1021740 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool11 SAMEA3714591 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714591|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:31Z|INSDC status:public|Submitter Id:ad7311d0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCATAGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad7311d0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#23 15565797 Illumina sequencing of library 15565797 constructed from sample accession ERS1021740 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TGCATAGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#23.cram cram 1558893960.0 11991492.0 SC RUN 18685 7#23 0:55 1:75 A:396487487;C:292649533;G:296791013;T:572723157;N:242770 55 75     396487487 292649533 296791013 572723157 242770 ERX1468171 ERS1021740 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27557 0.70388 0.15417 0.20852 0.95676 0.86251 0.63908 0.44514 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3323 3323 ERR1396911 ERX1468170 ERS1021739 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool10 SAMEA3714590 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714590|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:31Z|INSDC status:public|Submitter Id:ad6d9390 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGATACGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad6d9390 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#22 15565796 Illumina sequencing of library 15565796 constructed from sample accession ERS1021739 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TGATACGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#22.cram cram 1170991380.0 9007626.0 SC RUN 18685 7#22 0:55 1:75 A:293964753;C:221404783;G:222205055;T:433235455;N:181334 55 75     293964753 221404783 222205055 433235455 181334 ERX1468170 ERS1021739 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26617 0.70518 0.15215 0.21161 0.95483 0.86048 0.59208 0.58704 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3324 3324 ERR1396910 ERX1468169 ERS1021738 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool9 SAMEA3714589 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714589|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:30Z|INSDC status:public|Submitter Id:ad688a80 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad688a80 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#21 15565795 Illumina sequencing of library 15565795 constructed from sample accession ERS1021738 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TCGAGCGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#21.cram cram 974531350.0 7496395.0 SC RUN 18685 7#21 0:55 1:75 A:242370352;C:184752737;G:184679167;T:362568848;N:160246 55 75     242370352 184752737 184679167 362568848 160246 ERX1468169 ERS1021738 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.23966 0.70444 0.14017 0.21855 0.95976 0.86285 0.58227 0.56879 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3325 3325 ERR1396909 ERX1468168 ERS1021737 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool8 SAMEA3714588 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714588|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:30Z|INSDC status:public|Submitter Id:ad638170 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGAGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad638170 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#20 15565794 Illumina sequencing of library 15565794 constructed from sample accession ERS1021737 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TTGGAGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#20.cram cram 1114198410.0 8570757.0 SC RUN 18685 7#20 0:55 1:75 A:274431575;C:215748003;G:213056567;T:410792226;N:170039 55 75     274431575 215748003 213056567 410792226 170039 ERX1468168 ERS1021737 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26146 0.71124 0.13646 0.18465 0.95797 0.86338 0.69052 0.62839 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3326 3326 ERR1396908 ERX1468167 ERS1021736 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool7 SAMEA3714587 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714587|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:30Z|INSDC status:public|Submitter Id:ad5e9f70 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTGCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad5e9f70 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#19 15565793 Illumina sequencing of library 15565793 constructed from sample accession ERS1021736 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TCTGCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#19.cram cram 1154483070.0 8880639.0 SC RUN 18685 7#19 0:55 1:75 A:289265212;C:214550871;G:217236332;T:433235319;N:195336 55 75     289265212 214550871 217236332 433235319 195336 ERX1468167 ERS1021736 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.32936 0.72399 0.15186 0.19024 0.95465 0.85703 0.7102 0.61585 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3327 3327 ERR1396907 ERX1468166 ERS1021735 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool6 SAMEA3714586 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714586|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:29Z|INSDC status:public|Submitter Id:ad566210 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCTGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad566210 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#18 15565792 Illumina sequencing of library 15565792 constructed from sample accession ERS1021735 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TTCTGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#18.cram cram 1650242490.0 12694173.0 SC RUN 18685 7#18 0:55 1:75 A:418741424;C:316770655;G:317420865;T:597065812;N:243734 55 75     418741424 316770655 317420865 597065812 243734 ERX1468166 ERS1021735 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2719 0.69667 0.14139 0.19414 0.95233 0.86099 0.60318 0.61476 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3328 3328 ERR1396906 ERX1468165 ERS1021734 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool5 SAMEA3714585 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714585|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:29Z|INSDC status:public|Submitter Id:ad518010 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTACCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad518010 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#17 15565791 Illumina sequencing of library 15565791 constructed from sample accession ERS1021734 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TGTACCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#17.cram cram 1143294620.0 8794574.0 SC RUN 18685 7#17 0:55 1:75 A:283567725;C:216749138;G:222617008;T:420177517;N:183232 55 75     283567725 216749138 222617008 420177517 183232 ERX1468165 ERS1021734 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25629 0.70988 0.12914 0.19212 0.96102 0.86458 0.6719 0.63538 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3329 3329 ERR1396905 ERX1468164 ERS1021733 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool4 SAMEA3714584 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714584|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:28Z|INSDC status:public|Submitter Id:ad4c9e10 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCGTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad4c9e10 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#16 15565790 Illumina sequencing of library 15565790 constructed from sample accession ERS1021733 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TCCGTCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#16.cram cram 1250246660.0 9617282.0 SC RUN 18685 7#16 0:55 1:75 A:313068005;C:243903529;G:254848654;T:438239708;N:186764 55 75     313068005 243903529 254848654 438239708 186764 ERX1468164 ERS1021733 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.28844 0.68297 0.14831 0.19057 0.9553 0.87109 0.70909 0.6501 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3330 3330 ERR1396904 ERX1468163 ERS1021732 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool3 SAMEA3714583 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714583|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:28Z|INSDC status:public|Submitter Id:ad47bc10 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGCGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad47bc10 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#15 15565789 Illumina sequencing of library 15565789 constructed from sample accession ERS1021732 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TAAGCGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#15.cram cram 1357022940.0 10438638.0 SC RUN 18685 7#15 0:55 1:75 A:340850956;C:255212273;G:253449469;T:507302058;N:208184 55 75     340850956 255212273 253449469 507302058 208184 ERX1468163 ERS1021732 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26898 0.69358 0.15307 0.19975 0.95698 0.86111 0.61547 0.5703 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3331 3331 ERR1396903 ERX1468162 ERS1021731 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool2 SAMEA3714582 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714582|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:27Z|INSDC status:public|Submitter Id:ad42da10 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCGGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad42da10 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#14 15565788 Illumina sequencing of library 15565788 constructed from sample accession ERS1021731 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TCTCGGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#14.cram cram 1959122230.0 15070171.0 SC RUN 18685 7#14 0:55 1:75 A:506069608;C:397632868;G:401037452;T:654054155;N:328147 55 75     506069608 397632868 401037452 654054155 328147 ERX1468162 ERS1021731 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.3209 0.582 0.19757 0.18421 0.96489 0.88469 0.79636 0.43859 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3332 3332 ERR1396902 ERX1468161 ERS1021730 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 pool1 SAMEA3714581 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714581|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:27Z|INSDC status:public|Submitter Id:ad3c7170 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 124 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGTTGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad3c7170 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#13 15565787 Illumina sequencing of library 15565787 constructed from sample accession ERS1021730 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TGGTTGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#13.cram cram 1366767220.0 10513594.0 SC RUN 18685 7#13 0:55 1:75 A:361998116;C:255328962;G:252823739;T:496395094;N:221309 55 75     361998116 255328962 252823739 496395094 221309 ERX1468161 ERS1021730 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26761 0.67655 0.14181 0.17579 0.9571 0.86413 0.66307 0.63948 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3333 3333 ERR1396901 ERX1468160 ERS1021729 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 12 SAMEA3714580 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714580|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:27Z|INSDC status:public|Submitter Id:ad376860 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CTTGTACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad376860 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#12 15565786 Illumina sequencing of library 15565786 constructed from sample accession ERS1021729 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence CTTGTACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#12.cram cram 1576028220.0 12123294.0 SC RUN 18685 7#12 0:55 1:75 A:398727902;C:298387487;G:302387996;T:576293491;N:231344 55 75     398727902 298387487 302387996 576293491 231344 ERX1468160 ERS1021729 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27653 0.70454 0.13808 0.18699 0.95641 0.86827 0.6934 0.65499 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3334 3334 ERR1396900 ERX1468159 ERS1021728 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 11 SAMEA3714579 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714579|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:26Z|INSDC status:public|Submitter Id:ad328660 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGCTACAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad328660 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#11 15565785 Illumina sequencing of library 15565785 constructed from sample accession ERS1021728 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence GGCTACAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#11.cram cram 1361276800.0 10471360.0 SC RUN 18685 7#11 0:55 1:75 A:337484702;C:261592399;G:262072245;T:499921881;N:205573 55 75     337484702 261592399 262072245 499921881 205573 ERX1468159 ERS1021728 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27808 0.71186 0.14797 0.19749 0.95521 0.85967 0.62032 0.60435 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3335 3335 ERR1396899 ERX1468158 ERS1021727 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 10 SAMEA3714578 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714578|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:26Z|INSDC status:public|Submitter Id:ad2da460 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad2da460 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#10 15565784 Illumina sequencing of library 15565784 constructed from sample accession ERS1021727 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TAGCTTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#10.cram cram 1054318200.0 8110140.0 SC RUN 18685 7#10 0:55 1:75 A:261119949;C:203644742;G:205376909;T:384021935;N:154665 55 75     261119949 203644742 205376909 384021935 154665 ERX1468158 ERS1021727 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.28622 0.71987 0.1425 0.19982 0.95755 0.86736 0.6753 0.63991 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3336 3336 ERR1396898 ERX1468157 ERS1021726 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 9 SAMEA3714577 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714577|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:25Z|INSDC status:public|Submitter Id:ad28c260 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCAGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad28c260 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#9 15565783 Illumina sequencing of library 15565783 constructed from sample accession ERS1021726 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence GATCAGCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#9.cram cram 1415513970.0 10888569.0 SC RUN 18685 7#9                       ERX1468157 ERS1021726 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.17652 0.48024 0.1127 0.14752 0.96284 0.88286 0.49862 0.51388 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3337 3337 ERR1396897 ERX1468156 ERS1021725 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 8 SAMEA3714576 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714576|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:25Z|INSDC status:public|Submitter Id:ad23b950 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACTTGATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad23b950 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#8 15565782 Illumina sequencing of library 15565782 constructed from sample accession ERS1021725 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence ACTTGATG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#8.cram cram 1403495340.0 10796118.0 SC RUN 18685 7#8 0:55 1:75 A:358351505;C:268143775;G:267733006;T:509049559;N:217495 55 75     358351505 268143775 267733006 509049559 217495 ERX1468156 ERS1021725 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26904 0.68906 0.13365 0.18979 0.95436 0.86638 0.68656 0.63589 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3338 3338 ERR1396896 ERX1468155 ERS1021724 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 7 SAMEA3714575 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714575|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:24Z|INSDC status:public|Submitter Id:ad1efe60 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CAGATCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad1efe60 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#7 15565781 Illumina sequencing of library 15565781 constructed from sample accession ERS1021724 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence CAGATCTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#7.cram cram 587450110.0 4518847.0 SC RUN 18685 7#7 0:55 1:75 A:146949737;C:112277906;G:117548652;T:210579691;N:94124 55 75     146949737 112277906 117548652 210579691 94124 ERX1468155 ERS1021724 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26926 0.69401 0.14293 0.21342 0.96008 0.86431 0.68105 0.62372 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3339 3339 ERR1396895 ERX1468154 ERS1021723 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 6 SAMEA3714574 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714574|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:23Z|INSDC status:public|Submitter Id:ad19f550 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCAATGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad19f550 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#6 15565780 Illumina sequencing of library 15565780 constructed from sample accession ERS1021723 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence GCCAATGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#6.cram cram 1316564990.0 10127423.0 SC RUN 18685 7#6 0:55 1:75 A:323756294;C:259505556;G:260367255;T:472722335;N:213550 55 75     323756294 259505556 260367255 472722335 213550 ERX1468154 ERS1021723 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.24507 0.71281 0.11653 0.19032 0.95797 0.86576 0.67207 0.64675 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3340 3340 ERR1396894 ERX1468153 ERS1021722 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 5 SAMEA3714573 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714573|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:22Z|INSDC status:public|Submitter Id:ad153a60 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACAGTGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad153a60 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#5 15565779 Illumina sequencing of library 15565779 constructed from sample accession ERS1021722 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence ACAGTGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#5.cram cram 1231016410.0 9469357.0 SC RUN 18685 7#5 0:55 1:75 A:306911674;C:236012101;G:234015794;T:453881247;N:195594 55 75     306911674 236012101 234015794 453881247 195594 ERX1468153 ERS1021722 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25142 0.70799 0.13353 0.19255 0.95513 0.85794 0.63164 0.58755 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3341 3341 ERR1396893 ERX1468152 ERS1021721 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 4 SAMEA3714572 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714572|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:21Z|INSDC status:public|Submitter Id:ad100a40 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACCACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad100a40 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#4 15565778 Illumina sequencing of library 15565778 constructed from sample accession ERS1021721 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TGACCACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#4.cram cram 1756630980.0 13512546.0 SC RUN 18685 7#4 0:55 1:75 A:435509450;C:336470440;G:338726864;T:645629325;N:294901 55 75     435509450 336470440 338726864 645629325 294901 ERX1468152 ERS1021721 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2474 0.69858 0.12232 0.16819 0.9581 0.86072 0.68762 0.49671 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3342 3342 ERR1396892 ERX1468151 ERS1021720 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 3 SAMEA3714571 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714571|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:21Z|INSDC status:public|Submitter Id:ad0b0130 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad0b0130 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#3 15565777 Illumina sequencing of library 15565777 constructed from sample accession ERS1021720 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence TTAGGCAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#3.cram cram 2102533290.0 16173333.0 SC RUN 18685 7#3 0:55 1:75 A:528796389;C:400104977;G:407118529;T:766174899;N:338496 55 75     528796389 400104977 407118529 766174899 338496 ERX1468151 ERS1021720 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.28258 0.70273 0.13116 0.19828 0.95714 0.86468 0.69966 0.63545 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3343 3343 ERR1396891 ERX1468150 ERS1021719 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 2 SAMEA3714570 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714570|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:20Z|INSDC status:public|Submitter Id:ad05d110 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CGATGTTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad05d110 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#2 15565776 Illumina sequencing of library 15565776 constructed from sample accession ERS1021719 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence CGATGTTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#2.cram cram 1662464570.0 12788189.0 SC RUN 18685 7#2 0:55 1:75 A:405179193;C:331243373;G:328181323;T:597622959;N:237722 55 75     405179193 331243373 328181323 597622959 237722 ERX1468150 ERS1021719 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26402 0.75798 0.14738 0.19349 0.95921 0.8634 0.62719 0.64651 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3344 3344 ERR1396890 ERX1468149 ERS1021718 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 124 1 1 SAMEA3714569 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly ZFS:0000020|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714569|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:20Z|INSDC status:public|Submitter Id:ad002bc0 9ffd 11e5 913a 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 124 clutch 1 collected at gastrula 75% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ATCACGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:ad002bc0 9ffd 11e5 913a 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 7#1 15565775 Illumina sequencing of library 15565775 constructed from sample accession ERS1021718 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 7. This submission includes reads tagged with the sequence ATCACGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_7#1.cram cram 1469927940.0 11307138.0 SC RUN 18685 7#1 0:55 1:75 A:367031409;C:285571325;G:288784726;T:528316599;N:223881 55 75     367031409 285571325 288784726 528316599 223881 ERX1468149 ERS1021718 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26281 0.70616 0.14165 0.1896 0.95905 0.86872 0.63096 0.47802 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3369 3369 ERR1396865 ERX1468124 ERS1021693 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool12 SAMEA3714544 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714544|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:07Z|INSDC status:public|Submitter Id:b8a9f500 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGACTCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b8a9f500 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#24 15565750 Illumina sequencing of library 15565750 constructed from sample accession ERS1021693 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TTGACTCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#24.cram cram 1438737300.0 11067210.0 SC RUN 18685 5#24 0:55 1:75 A:380064472;C:251444722;G:277215210;T:529686842;N:326054 55 75     380064472 251444722 277215210 529686842 326054 ERX1468124 ERS1021693 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25981 0.86299 0.12497 0.15157 0.96059 0.84285 0.76524 0.70835 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3370 3370 ERR1396864 ERX1468123 ERS1021692 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool11 SAMEA3714543 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714543|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:06Z|INSDC status:public|Submitter Id:b8a2c910 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGCATAGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b8a2c910 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#23 15565749 Illumina sequencing of library 15565749 constructed from sample accession ERS1021692 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TGCATAGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#23.cram cram 887110250.0 6823925.0 SC RUN 18685 5#23 0:55 1:75 A:222138568;C:165525462;G:179774448;T:319468465;N:203307 55 75     222138568 165525462 179774448 319468465 203307 ERX1468123 ERS1021692 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2529 0.87292 0.117 0.22306 0.95517 0.83757 0.68948 0.6437 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3371 3371 ERR1396863 ERX1468122 ERS1021691 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool10 SAMEA3714542 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714542|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:05Z|INSDC status:public|Submitter Id:b89bc430 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGATACGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b89bc430 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#22 15565748 Illumina sequencing of library 15565748 constructed from sample accession ERS1021691 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TGATACGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#22.cram cram 873352090.0 6718093.0 SC RUN 18685 5#22 0:55 1:75 A:222664212;C:158419191;G:172269131;T:319796501;N:203055 55 75     222664212 158419191 172269131 319796501 203055 ERX1468122 ERS1021691 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.2535 0.86838 0.12829 0.22501 0.95509 0.8268 0.61813 0.61379 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3372 3372 ERR1396862 ERX1468121 ERS1021690 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool9 SAMEA3714541 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714541|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:05Z|INSDC status:public|Submitter Id:b894bf50 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCGAGCGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b894bf50 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#21 15565747 Illumina sequencing of library 15565747 constructed from sample accession ERS1021690 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TCGAGCGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#21.cram cram 716611350.0 5512395.0 SC RUN 18685 5#21 0:55 1:75 A:178015969;C:132690260;G:143668280;T:262065890;N:170951 55 75     178015969 132690260 143668280 262065890 170951 ERX1468121 ERS1021690 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.22094 0.88159 0.12071 0.25028 0.9598 0.83508 0.60962 0.60547 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3373 3373 ERR1396861 ERX1468120 ERS1021689 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool8 SAMEA3714540 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714540|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:04Z|INSDC status:public|Submitter Id:b88d9360 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTGGAGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b88d9360 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#20 15565746 Illumina sequencing of library 15565746 constructed from sample accession ERS1021689 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TTGGAGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#20.cram cram 1128660520.0 8682004.0 SC RUN 18685 5#20 0:55 1:75 A:285288199;C:202676384;G:220214076;T:420220301;N:261560 55 75     285288199 202676384 220214076 420220301 261560 ERX1468120 ERS1021689 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27157 0.88228 0.11928 0.19793 0.9556 0.83075 0.7421 0.63416 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3374 3374 ERR1396860 ERX1468119 ERS1021688 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool7 SAMEA3714539 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714539|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:04Z|INSDC status:public|Submitter Id:b886b590 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTGCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b886b590 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#19 15565745 Illumina sequencing of library 15565745 constructed from sample accession ERS1021688 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TCTGCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#19.cram cram 892968570.0 6868989.0 SC RUN 18685 5#19 0:55 1:75 A:222843579;C:163776943;G:180026810;T:326105198;N:216040 55 75     222843579 163776943 180026810 326105198 216040 ERX1468119 ERS1021688 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.31532 0.88245 0.12125 0.21414 0.95308 0.83177 0.76806 0.6705 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3375 3375 ERR1396859 ERX1468118 ERS1021687 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool6 SAMEA3714538 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714538|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:03Z|INSDC status:public|Submitter Id:b87f89a0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTCTGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b87f89a0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#18 15565744 Illumina sequencing of library 15565744 constructed from sample accession ERS1021687 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TTCTGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#18.cram cram 1047655960.0 8058892.0 SC RUN 18685 5#18 0:55 1:75 A:267624825;C:189249451;G:205359908;T:385185307;N:236469 55 75     267624825 189249451 205359908 385185307 236469 ERX1468118 ERS1021687 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26179 0.86958 0.13438 0.21835 0.95016 0.82613 0.6353 0.61006 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3376 3376 ERR1396858 ERX1468117 ERS1021686 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool5 SAMEA3714537 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714537|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:02Z|INSDC status:public|Submitter Id:b878abd0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGTACCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b878abd0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#17 15565743 Illumina sequencing of library 15565743 constructed from sample accession ERS1021686 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TGTACCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#17.cram cram 1064150490.0 8185773.0 SC RUN 18685 5#17 0:55 1:75 A:273287593;C:189899601;G:211204835;T:389498799;N:259662 55 75     273287593 189899601 211204835 389498799 259662 ERX1468117 ERS1021686 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25032 0.87942 0.10847 0.20172 0.95696 0.82921 0.73412 0.66937 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3377 3377 ERR1396857 ERX1468116 ERS1021685 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool4 SAMEA3714536 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714536|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:02Z|INSDC status:public|Submitter Id:b871a6f0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCCGTCTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b871a6f0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#16 15565742 Illumina sequencing of library 15565742 constructed from sample accession ERS1021685 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TCCGTCTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#16.cram cram 1146932540.0 8822558.0 SC RUN 18685 5#16 0:55 1:75 A:291342352;C:211684441;G:236563591;T:407082767;N:259389 55 75     291342352 211684441 236563591 407082767 259389 ERX1468116 ERS1021685 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27258 0.87324 0.12415 0.20229 0.95556 0.8368 0.73947 0.66304 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3378 3378 ERR1396856 ERX1468115 ERS1021684 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool3 SAMEA3714535 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714535|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:01Z|INSDC status:public|Submitter Id:b86aa210 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAAGCGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b86aa210 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#15 15565741 Illumina sequencing of library 15565741 constructed from sample accession ERS1021684 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TAAGCGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#15.cram cram 1098174480.0 8447496.0 SC RUN 18685 5#15 0:55 1:75 A:277881021;C:200842279;G:217951665;T:401247129;N:252386 55 75     277881021 200842279 217951665 401247129 252386 ERX1468115 ERS1021684 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.24507 0.8752 0.12006 0.22004 0.95633 0.83007 0.66179 0.61595 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3379 3379 ERR1396855 ERX1468114 ERS1021683 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool2 SAMEA3714534 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714534|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:01Z|INSDC status:public|Submitter Id:b863c440 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TCTCGGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b863c440 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#14 15565740 Illumina sequencing of library 15565740 constructed from sample accession ERS1021683 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TCTCGGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#14.cram cram 1190562490.0 9158173.0 SC RUN 18685 5#14 0:55 1:75 A:304095222;C:240233544;G:253264074;T:392675551;N:294099 55 75     304095222 240233544 253264074 392675551 294099 ERX1468114 ERS1021683 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.3827 0.82598 0.2397 0.28736 0.96414 0.85904 0.81992 0.71488 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3380 3380 ERR1396854 ERX1468113 ERS1021682 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 pool1 SAMEA3714533 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714533|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:41:00Z|INSDC status:public|Submitter Id:b85cbf60 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a pool of 8 wild type zebrafish embryos from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGGTTGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b85cbf60 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#13 15565739 Illumina sequencing of library 15565739 constructed from sample accession ERS1021682 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TGGTTGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#13.cram cram 990689960.0 7620692.0 SC RUN 18685 5#13 0:55 1:75 A:259754567;C:179959239;G:193854644;T:356882958;N:238552 55 75     259754567 179959239 193854644 356882958 238552 ERX1468113 ERS1021682 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.26157 0.85858 0.123 0.19317 0.95507 0.83704 0.70963 0.67282 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3381 3381 ERR1396853 ERX1468112 ERS1021681 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 12 SAMEA3714532 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714532|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:41:00Z|INSDC status:public|Submitter Id:b855ba80 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CTTGTACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b855ba80 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#12 15565738 Illumina sequencing of library 15565738 constructed from sample accession ERS1021681 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence CTTGTACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#12.cram cram 771923620.0 5937874.0 SC RUN 18685 5#12 0:55 1:75 A:194727256;C:146480733;G:160616636;T:269924481;N:174514 55 75     194727256 146480733 160616636 269924481 174514 ERX1468112 ERS1021681 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25409 0.86506 0.10667 0.21311 0.95846 0.85145 0.73009 0.69258 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3382 3382 ERR1396852 ERX1468111 ERS1021680 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 11 SAMEA3714531 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714531|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:40:59Z|INSDC status:public|Submitter Id:b84eb5a0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GGCTACAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b84eb5a0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#11 15565737 Illumina sequencing of library 15565737 constructed from sample accession ERS1021680 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence GGCTACAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#11.cram cram 893836190.0 6875663.0 SC RUN 18685 5#11 0:55 1:75 A:227856635;C:166095765;G:181478392;T:318202138;N:203260 55 75     227856635 166095765 181478392 318202138 203260 ERX1468111 ERS1021680 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.23236 0.8355 0.11804 0.2027 0.95913 0.84457 0.65721 0.63966 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3383 3383 ERR1396851 ERX1468110 ERS1021679 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 10 SAMEA3714530 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714530|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:40:59Z|INSDC status:public|Submitter Id:b847b0c0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TAGCTTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b847b0c0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#10 15565736 Illumina sequencing of library 15565736 constructed from sample accession ERS1021679 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TAGCTTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#10.cram cram 854191910.0 6570707.0 SC RUN 18685 5#10 0:55 1:75 A:203172769;C:171619237;G:187295524;T:291917121;N:187259 55 75     203172769 171619237 187295524 291917121 187259 ERX1468110 ERS1021679 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25446 0.90312 0.09598 0.2452 0.95966 0.85429 0.74868 0.6933 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3384 3384 ERR1396850 ERX1468109 ERS1021678 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 9 SAMEA3714529 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714529|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:58Z|INSDC status:public|Submitter Id:b840d2f0 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GATCAGCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b840d2f0 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#9 15565735 Illumina sequencing of library 15565735 constructed from sample accession ERS1021678 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence GATCAGCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#9.cram cram 805513150.0 6196255.0 SC RUN 18685 5#9 0:55 1:75 A:196838742;C:153074508;G:169088730;T:286329756;N:181414 55 75     196838742 153074508 169088730 286329756 181414 ERX1468109 ERS1021678 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.24561 0.89101 0.10849 0.22003 0.95753 0.83879 0.70053 0.64318 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3385 3385 ERR1396849 ERX1468108 ERS1021677 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 8 SAMEA3714528 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714528|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:58Z|INSDC status:public|Submitter Id:b839ce10 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACTTGATG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b839ce10 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#8 15565734 Illumina sequencing of library 15565734 constructed from sample accession ERS1021677 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence ACTTGATG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#8.cram cram 1044256200.0 8032740.0 SC RUN 18685 5#8 0:55 1:75 A:259689113;C:201935699;G:219321998;T:363068265;N:241125 55 75     259689113 201935699 219321998 363068265 241125 ERX1468108 ERS1021677 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25805 0.8829 0.1092 0.22207 0.95597 0.8437 0.72074 0.68679 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3386 3386 ERR1396848 ERX1468107 ERS1021676 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 7 SAMEA3714527 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714527|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:57Z|INSDC status:public|Submitter Id:b832c930 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CAGATCTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b832c930 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#7 15565733 Illumina sequencing of library 15565733 constructed from sample accession ERS1021676 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence CAGATCTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#7.cram cram 902193110.0 6939947.0 SC RUN 18685 5#7 0:55 1:75 A:228056403;C:163807117;G:181990978;T:328124011;N:214601 55 75     228056403 163807117 181990978 328124011 214601 ERX1468107 ERS1021676 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.27104 0.86915 0.11056 0.22266 0.95728 0.83307 0.28377 0.65306 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3387 3387 ERR1396847 ERX1468106 ERS1021675 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 6 SAMEA3714526 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714526|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:40:57Z|INSDC status:public|Submitter Id:b82beb60 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence GCCAATGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b82beb60 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#6 15565732 Illumina sequencing of library 15565732 constructed from sample accession ERS1021675 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence GCCAATGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#6.cram cram 832382720.0 6402944.0 SC RUN 18685 5#6 0:55 1:75 A:199213699;C:165182641;G:177339658;T:290451620;N:195102 55 75     199213699 165182641 177339658 290451620 195102 ERX1468106 ERS1021675 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25786 0.90114 0.11225 0.2852 0.96199 0.85322 0.76447 0.71281 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3388 3388 ERR1396846 ERX1468105 ERS1021674 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 5 SAMEA3714525 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714525|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:56Z|INSDC status:public|Submitter Id:b8261f00 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ACAGTGGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b8261f00 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#5 15565731 Illumina sequencing of library 15565731 constructed from sample accession ERS1021674 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence ACAGTGGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#5.cram cram 1050590190.0 8081463.0 SC RUN 18685 5#5 0:55 1:75 A:272490130;C:188208407;G:202912469;T:386726484;N:252700 55 75     272490130 188208407 202912469 386726484 252700 ERX1468105 ERS1021674 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25951 0.85942 0.13099 0.22506 0.95353 0.82737 0.68532 0.63027 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3389 3389 ERR1396845 ERX1468104 ERS1021673 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 4 SAMEA3714524 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714524|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:40:55Z|INSDC status:public|Submitter Id:b81f6840 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TGACCACT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b81f6840 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#4 15565730 Illumina sequencing of library 15565730 constructed from sample accession ERS1021673 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TGACCACT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#4.cram cram 1042253680.0 8017336.0 SC RUN 18685 5#4 0:55 1:75 A:257600361;C:199958488;G:217580788;T:366860760;N:253283 55 75     257600361 199958488 217580788 366860760 253283 ERX1468104 ERS1021673 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.22758 0.89284 0.0987 0.2109 0.95935 0.84289 0.71021 0.71398 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3390 3390 ERR1396844 ERX1468103 ERS1021672 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 3 SAMEA3714523 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714523|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:55Z|INSDC status:public|Submitter Id:b81a5f30 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence TTAGGCAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b81a5f30 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#3 15565729 Illumina sequencing of library 15565729 constructed from sample accession ERS1021672 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence TTAGGCAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#3.cram cram 1187625270.0 9135579.0 SC RUN 18685 5#3 0:55 1:75 A:304297624;C:219557471;G:237533305;T:425954234;N:282636 55 75     304297624 219557471 237533305 425954234 282636 ERX1468103 ERS1021672 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.25427 0.8772 0.11092 0.23182 0.95948 0.84342 0.73804 0.69659 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3391 3391 ERR1396843 ERX1468102 ERS1021671 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 2 SAMEA3714522 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714522|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:16Z|INSDC last update:2015 12 16T13:40:54Z|INSDC status:public|Submitter Id:b8155620 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence CGATGTTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b8155620 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#2 15565728 Illumina sequencing of library 15565728 constructed from sample accession ERS1021671 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence CGATGTTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#2.cram cram 1358929650.0 10453305.0 SC RUN 18685 5#2 0:55 1:75 A:347320834;C:265329494;G:284537385;T:461427368;N:314569 55 75     347320834 265329494 284537385 461427368 314569 ERX1468102 ERS1021671 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.24077 0.84809 0.12377 0.23532 0.96086 0.85204 0.67336 0.70825 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3392 3392 ERR1396842 ERX1468101 ERS1021670 ERP013756 PRJEB12296 Baseline expression from transcriptional profiling of zebrafish developmental stages 2 Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_2-sc-4029 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of wild type zebrafish embryos at different stages of development for baseline transcriptional profiling ArrayExpress:E ERAD 453     ZMP phenotype 115 1 1 SAMEA3714521 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:50% epiboly ZFS:0000017|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 03|ENA last update:2015 12 16|External Id:SAMEA3714521|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 03T14:22:15Z|INSDC last update:2015 12 16T13:40:54Z|INSDC status:public|Submitter Id:b8096f40 9ff8 11e5 a811 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single wild type zebrafish embryo from ZMP phenotype 115 clutch 1 collected at gastrula 50% epiboly stage plus ERCC spike mix 2 Ambion. A 8 base indexing sequence ATCACGTT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:b8096f40 9ff8 11e5 a811 68b59976a382|strain:mixed                 Illumina HiSeq 2000 paired end sequencing SC EXP 18685 5#1 15565727 Illumina sequencing of library 15565727 constructed from sample accession ERS1021670 for study accession ERP013756. This is part of an Illumina multiplexed sequencing run 18685 5. This submission includes reads tagged with the sequence ATCACGTT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000   ERP013756 Illumina HiSeq 2000 paired end sequencing ENA FIRST PUBLIC:2016 05 03|ENA LAST UPDATE:2018 11 16 18685_5#1.cram cram 875346420.0 6733434.0 SC RUN 18685 5#1 0:55 1:75 A:226130766;C:163767267;G:181523303;T:303722222;N:202862 55 75     226130766 163767267 181523303 303722222 202862 ERX1468101 ERS1021670 ERA612386 European Nucleotide Archive Wellcome Sanger Institute 2 0.22579 0.84893 0.11059 0.21012 0.95982 0.85299 0.67288 0.66673 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3393 3393 ERR1416104 ERX1486888 ERS1022156 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B12 SAMEA3715007 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715007|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:59Z|INSDC status:public|Submitter Id:44da0490 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTCTTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44da0490 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#94 15658812 Illumina sequencing of library 15658812 constructed from sample accession ERS1022156 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTCTTGGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#94.cram cram 143553540.0 1104258.0 SC RUN 18833 2#94 0:55 1:75 A:38978510;C:22418279;G:21802105;T:59948867;N:405779 55 75     38978510 22418279 21802105 59948867 405779 ERX1486888 ERS1022156 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23001 0.63053 0.18759 0.14607 0.97106 0.85423 0.68365 0.54595 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3394 3394 ERR1416103 ERX1486887 ERS1022155 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B11 SAMEA3715006 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715006|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:58Z|INSDC status:public|Submitter Id:44d374e0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GATTCATC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44d374e0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#93 15658811 Illumina sequencing of library 15658811 constructed from sample accession ERS1022155 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GATTCATC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#93.cram cram 171794740.0 1321498.0 SC RUN 18833 2#93 0:55 1:75 A:46535160;C:26025035;G:25313005;T:73432644;N:488896 55 75     46535160 26025035 25313005 73432644 488896 ERX1486887 ERS1022155 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.19882 0.65157 0.14938 0.16099 0.97262 0.86249 0.77602 0.55693 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3395 3395 ERR1416102 ERX1486886 ERS1022154 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B10 SAMEA3715005 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715005|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:58Z|INSDC status:public|Submitter Id:44cce530 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCTAACTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44cce530 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#92 15658810 Illumina sequencing of library 15658810 constructed from sample accession ERS1022154 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCTAACTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#92.cram cram 316777890.0 2436753.0 SC RUN 18833 2#92 0:55 1:75 A:85504802;C:49059636;G:47988059;T:133323321;N:902072 55 75     85504802 49059636 47988059 133323321 902072 ERX1486886 ERS1022154 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20841 0.63656 0.15138 0.14176 0.97325 0.86294 0.78951 0.56295 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3396 3396 ERR1416101 ERX1486885 ERS1022153 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B9 SAMEA3715004 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715004|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:57Z|INSDC status:public|Submitter Id:44c67c90 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCACTGTC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44c67c90 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#91 15658809 Illumina sequencing of library 15658809 constructed from sample accession ERS1022153 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCACTGTC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#91.cram cram 155587640.0 1196828.0 SC RUN 18833 2#91 0:55 1:75 A:42223880;C:23357985;G:22970621;T:66587917;N:447237 55 75     42223880 23357985 22970621 66587917 447237 ERX1486885 ERS1022153 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20817 0.64793 0.16821 0.15362 0.97185 0.86003 0.7117 0.54141 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3397 3397 ERR1416100 ERX1486884 ERS1022152 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B7 SAMEA3715003 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715003|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:56Z|INSDC status:public|Submitter Id:44bfece0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GACCTTAG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44bfece0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#90 15658808 Illumina sequencing of library 15658808 constructed from sample accession ERS1022152 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GACCTTAG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#90.cram cram 163355270.0 1256579.0 SC RUN 18833 2#90 0:55 1:75 A:42423490;C:25133800;G:24560736;T:70775792;N:461452 55 75     42423490 25133800 24560736 70775792 461452 ERX1486884 ERS1022152 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20783 0.6326 0.16301 0.14922 0.97025 0.85285 0.69869 0.51677 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3398 3398 ERR1416099 ERX1486883 ERS1022151 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B6 SAMEA3715002 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715002|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:56Z|INSDC status:public|Submitter Id:44b95d30 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCAATCCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44b95d30 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#89 15658807 Illumina sequencing of library 15658807 constructed from sample accession ERS1022151 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCAATCCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#89.cram cram 173740580.0 1336466.0 SC RUN 18833 2#89 0:55 1:75 A:47681538;C:25818596;G:25168307;T:74583531;N:488608 55 75     47681538 25818596 25168307 74583531 488608 ERX1486883 ERS1022151 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20191 0.63306 0.16055 0.15409 0.97317 0.86419 0.73601 0.53799 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3399 3399 ERR1416098 ERX1486882 ERS1022150 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B5 SAMEA3715001 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715001|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:55Z|INSDC status:public|Submitter Id:44b2a670 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTGTGTCG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44b2a670 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#88 15658806 Illumina sequencing of library 15658806 constructed from sample accession ERS1022150 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTGTGTCG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#88.cram cram 189973550.0 1461335.0 SC RUN 18833 2#88 0:55 1:75 A:52725284;C:29020706;G:27634673;T:80045396;N:547491 55 75     52725284 29020706 27634673 80045396 547491 ERX1486882 ERS1022150 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.21331 0.65576 0.16501 0.16601 0.97118 0.86143 0.75093 0.55228 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3400 3400 ERR1416097 ERX1486881 ERS1022149 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B4 SAMEA3715000 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715000|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:55Z|INSDC status:public|Submitter Id:44ac3dd0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GATAGAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44ac3dd0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#87 15658805 Illumina sequencing of library 15658805 constructed from sample accession ERS1022149 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GATAGAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#87.cram cram 207883650.0 1599105.0 SC RUN 18833 2#87 0:55 1:75 A:55868568;C:33216817;G:31489713;T:86716931;N:591621 55 75     55868568 33216817 31489713 86716931 591621 ERX1486881 ERS1022149 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23899 0.64416 0.19558 0.15775 0.97108 0.85557 0.68665 0.53329 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3401 3401 ERR1416096 ERX1486880 ERS1022148 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B3 SAMEA3714999 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714999|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:55Z|INSDC status:public|Submitter Id:44a5ae20 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GGATTAGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44a5ae20 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#86 15658804 Illumina sequencing of library 15658804 constructed from sample accession ERS1022148 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GGATTAGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#86.cram cram 214973460.0 1653642.0 SC RUN 18833 2#86 0:55 1:75 A:58778965;C:32719975;G:30622325;T:92245666;N:606529 55 75     58778965 32719975 30622325 92245666 606529 ERX1486880 ERS1022148 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.19986 0.65769 0.15513 0.15372 0.97289 0.8662 0.74335 0.53957 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3402 3402 ERR1416095 ERX1486879 ERS1022147 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B2 SAMEA3714998 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714998|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:54Z|INSDC status:public|Submitter Id:449f4580 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTTGTCGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:449f4580 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#85 15658803 Illumina sequencing of library 15658803 constructed from sample accession ERS1022147 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTTGTCGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#85.cram cram 223252900.0 1717330.0 SC RUN 18833 2#85 0:55 1:75 A:60452417;C:34915430;G:33258593;T:93994040;N:632420 55 75     60452417 34915430 33258593 93994040 632420 ERX1486879 ERS1022147 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20059 0.67019 0.15538 0.15837 0.97068 0.86078 0.71617 0.55839 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3403 3403 ERR1416094 ERX1486878 ERS1022146 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B1 SAMEA3714997 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714997|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:54Z|INSDC status:public|Submitter Id:4498b5d0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GAGGATGG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:4498b5d0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#84 15658802 Illumina sequencing of library 15658802 constructed from sample accession ERS1022146 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GAGGATGG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#84.cram cram 251045860.0 1931122.0 SC RUN 18833 2#84 0:55 1:75 A:69425430;C:38437638;G:35910829;T:106548577;N:723386 55 75     69425430 38437638 35910829 106548577 723386 ERX1486878 ERS1022146 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20648 0.65444 0.16958 0.15507 0.97443 0.85924 0.69323 0.52838 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3404 3404 ERR1416093 ERX1486877 ERS1022145 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A12 SAMEA3714996 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714996|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:50Z|INSDC status:public|Submitter Id:4490eda0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTAAGGTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:4490eda0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#83 15658801 Illumina sequencing of library 15658801 constructed from sample accession ERS1022145 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTAAGGTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#83.cram cram 168285390.0 1294503.0 SC RUN 18833 2#83 0:55 1:75 A:45399309;C:26639314;G:25140160;T:70633175;N:473432 55 75     45399309 26639314 25140160 70633175 473432 ERX1486877 ERS1022145 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.21755 0.64371 0.16837 0.15103 0.97064 0.85863 0.73024 0.56068 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3405 3405 ERR1416092 ERX1486876 ERS1022144 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A11 SAMEA3714995 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714995|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:49Z|INSDC status:public|Submitter Id:448a8500 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCTCCTTG is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:448a8500 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#82 15658800 Illumina sequencing of library 15658800 constructed from sample accession ERS1022144 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCTCCTTG. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#82.cram cram 355874090.0 2737493.0 SC RUN 18833 2#82 0:55 1:75 A:95193705;C:55369621;G:55835644;T:148466089;N:1009031 55 75     95193705 55369621 55835644 148466089 1009031 ERX1486876 ERS1022144 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.19712 0.68366 0.15814 0.16197 0.97029 0.85656 0.46974 0.58683 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3406 3406 ERR1416091 ERX1486875 ERS1022143 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A10 SAMEA3714994 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714994|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:49Z|INSDC status:public|Submitter Id:44841c60 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GAGCCAAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44841c60 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#81 15658799 Illumina sequencing of library 15658799 constructed from sample accession ERS1022143 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GAGCCAAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#81.cram cram 287356030.0 2210431.0 SC RUN 18833 2#81 0:55 1:75 A:77534766;C:45061649;G:43769656;T:120176804;N:813155 55 75     77534766 45061649 43769656 120176804 813155 ERX1486875 ERS1022143 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23076 0.64222 0.18199 0.15302 0.97149 0.85786 0.72222 0.55978 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3407 3407 ERR1416090 ERX1486874 ERS1022142 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A9 SAMEA3714993 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714993|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:48Z|INSDC status:public|Submitter Id:447db3c0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GGAATGAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:447db3c0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#80 15658798 Illumina sequencing of library 15658798 constructed from sample accession ERS1022142 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GGAATGAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#80.cram cram 287972230.0 2215171.0 SC RUN 18833 2#80 0:55 1:75 A:77880827;C:45074831;G:42934733;T:121280820;N:801019 55 75     77880827 45074831 42934733 121280820 801019 ERX1486874 ERS1022142 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23352 0.64944 0.17296 0.16212 0.97139 0.85949 0.80558 0.5632 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3408 3408 ERR1416089 ERX1486873 ERS1022141 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A8 SAMEA3714992 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714992|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:47Z|INSDC status:public|Submitter Id:44772410 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTCGCTAT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44772410 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#79 15658797 Illumina sequencing of library 15658797 constructed from sample accession ERS1022141 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTCGCTAT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#79.cram cram 246565930.0 1896661.0 SC RUN 18833 2#79 0:55 1:75 A:65807748;C:38620187;G:38672640;T:102767949;N:697406 55 75     65807748 38620187 38672640 102767949 697406 ERX1486873 ERS1022141 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.20709 0.6959 0.15365 0.14242 0.97102 0.85805 0.77973 0.57883 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3409 3409 ERR1416088 ERX1486872 ERS1022140 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A6 SAMEA3714991 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714991|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:47Z|INSDC status:public|Submitter Id:44709460 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCATGGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44709460 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#78 15658796 Illumina sequencing of library 15658796 constructed from sample accession ERS1022140 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCATGGCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#78.cram cram 274648530.0 2112681.0 SC RUN 18833 2#78 0:55 1:75 A:74037635;C:41640431;G:40551420;T:117638967;N:780077 55 75     74037635 41640431 40551420 117638967 780077 ERX1486872 ERS1022140 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.21676 0.69216 0.15828 0.1542 0.97295 0.86147 0.80063 0.5777 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3410 3410 ERR1416087 ERX1486871 ERS1022139 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A5 SAMEA3714990 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714990|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:46Z|INSDC status:public|Submitter Id:446ac800 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GAGGTGCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:446ac800 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#77 15658795 Illumina sequencing of library 15658795 constructed from sample accession ERS1022139 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GAGGTGCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#77.cram cram 241686380.0 1859126.0 SC RUN 18833 2#77 0:55 1:75 A:65429689;C:37361647;G:36577217;T:101630419;N:687408 55 75     65429689 37361647 36577217 101630419 687408 ERX1486871 ERS1022139 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.21537 0.69736 0.14585 0.15212 0.971 0.86062 0.8172 0.59754 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3411 3411 ERR1416086 ERX1486870 ERS1022138 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A4 SAMEA3714989 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714989|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:46Z|INSDC status:public|Submitter Id:4465e600 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTACATCT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:4465e600 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#76 15658794 Illumina sequencing of library 15658794 constructed from sample accession ERS1022138 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GTACATCT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#76.cram cram 266102330.0 2046941.0 SC RUN 18833 2#76 0:55 1:75 A:73365543;C:39146270;G:38077882;T:114761712;N:750923 55 75     73365543 39146270 38077882 114761712 750923 ERX1486870 ERS1022138 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.19577 0.66671 0.14517 0.1596 0.97449 0.86805 0.80708 0.57643 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3412 3412 ERR1416085 ERX1486869 ERS1022137 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A3 SAMEA3714988 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714988|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:45Z|INSDC status:public|Submitter Id:44612b10 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GAATCTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44612b10 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#75 15658793 Illumina sequencing of library 15658793 constructed from sample accession ERS1022137 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GAATCTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#75.cram cram 277157530.0 2131981.0 SC RUN 18833 2#75 0:55 1:75 A:75337261;C:42792128;G:41109646;T:117151996;N:766499 55 75     75337261 42792128 41109646 117151996 766499 ERX1486869 ERS1022137 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.21832 0.66817 0.17636 0.17651 0.97283 0.86316 0.73455 0.55888 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3413 3413 ERR1416084 ERX1486868 ERS1022136 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A2 SAMEA3714987 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714987|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:45Z|INSDC status:public|Submitter Id:445962e0 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GGTCGTGT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:445962e0 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#74 15658792 Illumina sequencing of library 15658792 constructed from sample accession ERS1022136 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GGTCGTGT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#74.cram cram 241802730.0 1860021.0 SC RUN 18833 2#74 0:55 1:75 A:65527799;C:37752573;G:36819473;T:101023505;N:679380 55 75     65527799 37752573 36819473 101023505 679380 ERX1486868 ERS1022136 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23963 0.68422 0.19158 0.15255 0.97141 0.85796 0.72845 0.39839 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3414 3414 ERR1416083 ERX1486867 ERS1022135 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 homozygous A1 SAMEA3714986 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3714986|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:44Z|INSDC status:public|Submitter Id:444fed00 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo homozygous for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GCAACATT is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:444fed00 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 2#73 15658791 Illumina sequencing of library 15658791 constructed from sample accession ERS1022135 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 2. This submission includes reads tagged with the sequence GCAACATT. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_2#73.cram cram 287970800.0 2215160.0 SC RUN 18833 2#73 0:55 1:75 A:77935274;C:43703422;G:43135073;T:122365904;N:831127 55 75     77935274 43703422 43135073 122365904 831127 ERX1486867 ERS1022135 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.19766 0.67665 0.15158 0.15201 0.97285 0.85894 0.76378 0.57007 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures
3415 3415 ERR1416082 ERX1486866 ERS1022156 ERP013835 PRJEB12364 Transcriptome profiling of zebrafish hesx1 knockout embryos Transcriptome_profiling_of_zebrafish_hesx1_knockout_embryos-sc-4030 Transcriptome Analysis Paired end sequence data from the IlluminaHiSeq was prepared from RNA of zebrafish hesx1 embryos at 80% epiboly for transcriptional profiling ArrayExpress:E ERAD 454     hesx1 wildtype B12 SAMEA3715007 Wellcome Sanger Institute ArrayExpress DevelopmentalStage:Gastrula:75% epiboly Gastrula:90% epiboly ZFS:0000020 ZFS:0000021|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 05 17|ENA last update:2015 12 16|External Id:SAMEA3715007|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 05 17T10:08:32Z|INSDC last update:2015 12 16T13:55:59Z|INSDC status:public|Submitter Id:44da0490 a245 11e5 9d69 68b59976a382|common name:zebrafish|sample description:3 prime end enriched mRNA from a single genotyped zebrafish embryo wild type for hesx1 allele u768 plus ERCC spike mix 2. A 8 base indexing sequence GTCTTGGC is bases 13 to 20 of read 1 followed by CG and polyT.|sample name:44da0490 a245 11e5 9d69 68b59976a382|strain:mixed                 Illumina HiSeq 2500 paired end sequencing SC EXP 18833 1#94 15658812 Illumina sequencing of library 15658812 constructed from sample accession ERS1022156 for study accession ERP013835. This is part of an Illumina multiplexed sequencing run 18833 1. This submission includes reads tagged with the sequence GTCTTGGC. Transcriptome counting qPCR only   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500   ERP013835 Illumina HiSeq 2500 paired end sequencing ENA FIRST PUBLIC:2016 05 17|ENA LAST UPDATE:2018 11 16 18833_1#94.cram cram 143154700.0 1101190.0 SC RUN 18833 1#94 0:55 1:75 A:38943191;C:22300658;G:21688839;T:59761135;N:460877 55 75     38943191 22300658 21688839 59761135 460877 ERX1486866 ERS1022156 ERA624581 European Nucleotide Archive Wellcome Sanger Institute 2 0.23067 0.63271 0.18857 0.14812 0.97066 0.85492 0.70427 0.54985 55 75 T B mate1 technical by mapping diff illumina hiseq_era 3prime cdna_unspecified unknown bulk unknown unknown   United Kingdom 2015-12-16 Gastrula Embryo Whole Organism All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;