metadata: run_metadata: 23 rows where devstage_curation = "Gastrula" and experiment.library

23 rows where devstage_curation = "Gastrula" and experiment.library_selection = "PolyA"

descending

Link	rowid ▼	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	sample.description	sample.title	sample.alias	sample.attributes	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
39686	39686	SRR2047225	SRX1045363	SRS950607	SRP058956	PRJNA285515	Danio rerio shield stage transcriptome	PRJNA285515	Transcriptome Analysis	Matched RNA seq to ribosome profiling	Matched to ribosome profiling experiments in SAMN02087561	Danio rerio Shield Stage Embryos RNA Seq	Shield Stage Embryos	strain:TLAB\|dev stage:Shield\|sex:not determined\|tissue:whole embryos\|BioSampleModel:Model organism or animal	Shield Stage Embryos matched to Ribosome Profiling	Shield Stage Embryos	1	Standard multiplexed paired end RNA Seq on the Broad Institute platform.	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	Illumina HiSeq 2000	<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>	SRP058956	RPF-RNASeq_Shield_1_L.fastq.gz RPF-RNASeq_Shield_3_R.fastq.gz RPF-RNASeq_Shield_3_L.fastq.gz RPF-RNASeq_Shield_2_R.fastq.gz RPF-RNASeq_Shield_2_L.fastq.gz RPF-RNASeq_Shield_1_R.fastq.gz	fastq fastq fastq fastq fastq fastq	7345884728.0	48328189.0	Shield Stage Embryos	0:76 1:76	A:1932619942;C:1748899064;G:1767113490;T:1895258511;N:1993721	76	76	1932619942	1748899064	1767113490	1895258511	1993721	SRX1045363	SRS950607	SRA270772	Harvard University\|Schier	Harvard University	2	0.94974	0.95573	0.08627	0.08599	0.76536	0.76812	0.4916	0.4943	76	76	B	B	biological fallback assumption	illumina	hiseq_era	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2015-06-03	Gastrula	Embryo	Whole Organism	All anatomical structures
49337	49337	SRR7891983	SRX4729615	SRS3812053	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 24hpf whole embryo sample1 Lane1	3.I1 24 wy 1 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 24hpf whole embryo sample1 Lane1\|BioSampleModel:Model organism or animal	mH2A1 24hpf whole embryo sample1 Lane1	3.I1 24 wy 1 Lane1	3.I1 24 wy 1 Lane1	mH2A1 24hpf whole embryo sample1 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	3.I1-24-wy-1-Lane1-R1.fastq 3.I1-24-wy-1-Lane1-R2.fastq	fastq fastq	509730568.0	3380092.0	3.I1 24 wy 1 Lane1 R1.fastq	0:75.48 1:75.33	A:125795631;C:125405901;G:134009974;T:124231387;N:287675	75	75	125795631	125405901	134009974	124231387	287675	SRX4729615	SRS3812053	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96512	0.96416	0.03453	0.0333	0.72328	0.7301	0.45116	0.46056	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-09-22	Gastrula	Embryo	Whole Organism	All anatomical structures
49341	49341	SRR7891987	SRX4729611	SRS3812049	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample1 Lane1	1.I1 ep wy 1 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample1 Lane1\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample1 Lane1	1.I1 ep wy 1 Lane1	1.I1 ep wy 1 Lane1	mH2A1 75% epiboly whole embryo sample1 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	1.I1-ep-wy-1-Lane1-R1.fastq 1.I1-ep-wy-1-Lane1-R2.fastq	fastq fastq	456184111.0	3022885.0	1.I1 ep wy 1 Lane1 R2.fastq	0:75.49 1:75.42	A:124801154;C:101476348;G:105797177;T:123852606;N:256826	75	75	124801154	101476348	105797177	123852606	256826	SRX4729611	SRS3812049	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.86441	0.86837	0.12005	0.11911	0.78301	0.7848	0.53529	0.53799	76	74	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49342	49342	SRR7891988	SRX4729610	SRS3812048	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample1 Lane2	1.I1 ep wy 1 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample1 Lane2\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample1 Lane2	1.I1 ep wy 1 Lane2	1.I1 ep wy 1 Lane2	mH2A1 75% epiboly whole embryo sample1 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	1.I1-ep-wy-1-Lane2-R1.fastq 1.I1-ep-wy-1-Lane2-R2.fastq	fastq fastq	444073291.0	2942645.0	1.I1 ep wy 1 Lane2 R2.fastq	0:75.49 1:75.42	A:121583905;C:98843982;G:102905490;T:120494449;N:245465	75	75	121583905	98843982	102905490	120494449	245465	SRX4729610	SRS3812048	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.86283	0.86631	0.12072	0.11849	0.78397	0.78516	0.53735	0.5281	74	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2018-09-22	Gastrula	Embryo	Whole Organism	All anatomical structures
49343	49343	SRR7891989	SRX4729609	SRS3812047	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample1 Lane3	9.I2 epi gfp 1 Lane3	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample1 Lane3\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample1 Lane3	9.I2 epi gfp 1 Lane3	9.I2 epi gfp 1 Lane3	mH2A2 75% epiboly GFP sample1 Lane3	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	9.I2-epi-gfp-1-Lane3-R1.fastq 9.I2-epi-gfp-1-Lane3-R2.fastq	fastq fastq	502199133.0	3328291.0	9.I2 epi gfp 1 Lane3 R1.fastq	0:75.51 1:75.38	A:129406575;C:119580810;G:123955765;T:128950548;N:305435	75	75	129406575	119580810	123955765	128950548	305435	SRX4729609	SRS3812047	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96374	0.96625	0.06525	0.06451	0.76315	0.76532	0.50665	0.50497	76	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49345	49345	SRR7891991	SRX4729607	SRS3812045	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample1 Lane1	2.I1 ep woy 1 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample1 Lane1\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample1 Lane1	2.I1 ep woy 1 Lane1	2.I1 ep woy 1 Lane1	mH2A1 75% epiboly whole embryo without xxx sample1 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	2.I1-ep-woy-1-Lane1-R1.fastq 2.I1-ep-woy-1-Lane1-R2.fastq	fastq fastq	495265704.0	3281045.0	2.I1 ep woy 1 Lane1 R2.fastq	0:75.51 1:75.44	A:140352102;C:107215423;G:109240908;T:138188537;N:268734	75	75	140352102	107215423	109240908	138188537	268734	SRX4729607	SRS3812045	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.93815	0.94258	0.09194	0.08757	0.78843	0.78764	0.50789	0.50592	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49346	49346	SRR7891992	SRX4729606	SRS3812044	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample1 Lane2	2.I1 ep woy 1 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample1 Lane2\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample1 Lane2	2.I1 ep woy 1 Lane2	2.I1 ep woy 1 Lane2	mH2A1 75% epiboly whole embryo without xxx sample1 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	2.I1-ep-woy-1-Lane2-R1.fastq 2.I1-ep-woy-1-Lane2-R2.fastq	fastq fastq	482046254.0	3193445.0	2.I1 ep woy 1 Lane2 R1.fastq	0:75.51 1:75.44	A:136696224;C:104395317;G:106243276;T:134451171;N:260266	75	75	136696224	104395317	106243276	134451171	260266	SRX4729606	SRS3812044	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.93845	0.94352	0.09271	0.08933	0.78644	0.78614	0.50588	0.50714	76	75	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49347	49347	SRR7891993	SRX4729605	SRS3812043	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample1 Lane4	9.I2 epi gfp 1 Lane4	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample1 Lane4\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample1 Lane4	9.I2 epi gfp 1 Lane4	9.I2 epi gfp 1 Lane4	mH2A2 75% epiboly GFP sample1 Lane4	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	9.I2-epi-gfp-1-Lane4-R1.fastq 9.I2-epi-gfp-1-Lane4-R2.fastq	fastq fastq	486218126.0	3222419.0	9.I2 epi gfp 1 Lane4 R1.fastq	0:75.51 1:75.38	A:125547722;C:115764880;G:119631877;T:124996326;N:277321	75	75	125547722	115764880	119631877	124996326	277321	SRX4729605	SRS3812043	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96348	0.96647	0.06552	0.06421	0.76295	0.76522	0.50657	0.50703	76	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49348	49348	SRR7891994	SRX4729604	SRS3812042	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 24hpf whole embryo sample1 Lane2	3.I1 24 wy 1 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 24hpf whole embryo sample1 Lane2\|BioSampleModel:Model organism or animal	mH2A1 24hpf whole embryo sample1 Lane2	3.I1 24 wy 1 Lane2	3.I1 24 wy 1 Lane2	mH2A1 24hpf whole embryo sample1 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	3.I1-24-wy-1-Lane2-R1.fastq 3.I1-24-wy-1-Lane2-R2.fastq	fastq fastq	500221294.0	3317079.0	3.I1 24 wy 1 Lane2 R2.fastq	0:75.48 1:75.33	A:123749555;C:123078893;G:131273530;T:121835014;N:284302	75	75	123749555	123078893	131273530	121835014	284302	SRX4729604	SRS3812042	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.9659	0.96472	0.03479	0.03377	0.7234	0.73113	0.45541	0.46895	74	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49349	49349	SRR7891995	SRX4729603	SRS3812040	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample2 Lane1	10.I2 epi gfp 2 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample2 Lane1\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample2 Lane1	10.I2 epi gfp 2 Lane1	10.I2 epi gfp 2 Lane1	mH2A2 75% epiboly GFP sample2 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	10.I2-epi-gfp-2-Lane1-R1.fastq 10.I2-epi-gfp-2-Lane1-R2.fastq	fastq fastq	283096715.0	1877442.0	10.I2 epi gfp 2 Lane1 R2.fastq	0:75.48 1:75.31	A:71033881;C:69720110;G:70846628;T:71338427;N:157669	75	75	71033881	69720110	70846628	71338427	157669	SRX4729603	SRS3812040	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.9661	0.96876	0.05255	0.05163	0.75532	0.75824	0.48277	0.48181	75	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49355	49355	SRR7892001	SRX4729597	SRS3812034	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample2 Lane1	5.I1 ep wy 2 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample2 Lane1\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample2 Lane1	5.I1 ep wy 2 Lane1	5.I1 ep wy 2 Lane1	mH2A1 75% epiboly whole embryo sample2 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	5.I1-ep-wy-2-Lane1-R1.fastq 5.I1-ep-wy-2-Lane1-R2.fastq	fastq fastq	348574840.0	2310385.0	5.I1 ep wy 2 Lane1 R2.fastq	0:75.51 1:75.36	A:87586701;C:85471128;G:86825811;T:88495175;N:196025	75	75	87586701	85471128	86825811	88495175	196025	SRX4729597	SRS3812034	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96823	0.97031	0.05454	0.05391	0.74888	0.75128	0.4766	0.47474	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49356	49356	SRR7892002	SRX4729596	SRS3812033	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample2 Lane2	5.I1 ep wy 2 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample2 Lane2\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample2 Lane2	5.I1 ep wy 2 Lane2	5.I1 ep wy 2 Lane2	mH2A1 75% epiboly whole embryo sample2 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	5.I1-ep-wy-2-Lane2-R1.fastq 5.I1-ep-wy-2-Lane2-R2.fastq	fastq fastq	340915369.0	2259615.0	5.I1 ep wy 2 Lane2 R2.fastq	0:75.52 1:75.36	A:85706953;C:83634858;G:84896890;T:86487487;N:189181	75	75	85706953	83634858	84896890	86487487	189181	SRX4729596	SRS3812033	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96775	0.96955	0.05347	0.05233	0.74809	0.75233	0.47816	0.47993	76	75	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49359	49359	SRR7892005	SRX4729593	SRS3812030	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample2 Lane3	5.I1 ep wy 2 Lane3	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample2 Lane3\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample2 Lane3	5.I1 ep wy 2 Lane3	5.I1 ep wy 2 Lane3	mH2A1 75% epiboly whole embryo sample2 Lane3	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	5.I1-ep-wy-2-Lane3-R1.fastq 5.I1-ep-wy-2-Lane3-R2.fastq	fastq fastq	352736044.0	2337910.0	5.I1 ep wy 2 Lane3 R1.fastq	0:75.52 1:75.36	A:88637067;C:86501628;G:87864984;T:89524754;N:207611	75	75	88637067	86501628	87864984	89524754	207611	SRX4729593	SRS3812030	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96809	0.97112	0.05336	0.0528	0.74718	0.75079	0.47718	0.47679	75	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49360	49360	SRR7892006	SRX4729592	SRS3812029	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo sample2 Lane4	5.I1 ep wy 2 Lane4	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo sample2 Lane4\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo sample2 Lane4	5.I1 ep wy 2 Lane4	5.I1 ep wy 2 Lane4	mH2A1 75% epiboly whole embryo sample2 Lane4	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	5.I1-ep-wy-2-Lane4-R1.fastq 5.I1-ep-wy-2-Lane4-R2.fastq	fastq fastq	341106146.0	2260869.0	5.I1 ep wy 2 Lane4 R2.fastq	0:75.51 1:75.36	A:85837100;C:83646068;G:84779770;T:86645340;N:197868	75	75	85837100	83646068	84779770	86645340	197868	SRX4729592	SRS3812029	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96757	0.97029	0.05363	0.05278	0.74848	0.75136	0.47365	0.47505	76	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49362	49362	SRR7892008	SRX4729590	SRS3812027	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample2 Lane4	10.I2 epi gfp 2 Lane4	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample2 Lane4\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample2 Lane4	10.I2 epi gfp 2 Lane4	10.I2 epi gfp 2 Lane4	mH2A2 75% epiboly GFP sample2 Lane4	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	10.I2-epi-gfp-2-Lane4-R1.fastq 10.I2-epi-gfp-2-Lane4-R2.fastq	fastq fastq	275588852.0	1827633.0	10.I2 epi gfp 2 Lane4 R1.fastq	0:75.47 1:75.32	A:69217962;C:67868461;G:68900002;T:69448617;N:153810	75	75	69217962	67868461	68900002	69448617	153810	SRX4729590	SRS3812027	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96617	0.96905	0.05181	0.05089	0.75444	0.75724	0.48295	0.48648	75	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49368	49368	SRR7892014	SRX4729584	SRS3812021	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample1 Lane1	9.I2 epi gfp 1 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample1 Lane1\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample1 Lane1	9.I2 epi gfp 1 Lane1	9.I2 epi gfp 1 Lane1	mH2A2 75% epiboly GFP sample1 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	9.I2-epi-gfp-1-Lane1-R1.fastq 9.I2-epi-gfp-1-Lane1-R2.fastq	fastq fastq	496992545.0	3293963.0	9.I2 epi gfp 1 Lane1 R2.fastq	0:75.50 1:75.38	A:128042542;C:118343159;G:122636262;T:127690969;N:279613	75	75	128042542	118343159	122636262	127690969	279613	SRX4729584	SRS3812021	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96413	0.96584	0.06548	0.06473	0.76185	0.76445	0.50648	0.48968	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49369	49369	SRR7892015	SRX4729583	SRS3812020	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample2 Lane2	10.I2 epi gfp 2 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample2 Lane2\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample2 Lane2	10.I2 epi gfp 2 Lane2	10.I2 epi gfp 2 Lane2	mH2A2 75% epiboly GFP sample2 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	10.I2-epi-gfp-2-Lane2-R1.fastq 10.I2-epi-gfp-2-Lane2-R2.fastq	fastq fastq	274447059.0	1820114.0	10.I2 epi gfp 2 Lane2 R1.fastq	0:75.47 1:75.31	A:68897661;C:67603576;G:68690482;T:69098427;N:156913	75	75	68897661	67603576	68690482	69098427	156913	SRX4729583	SRS3812020	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96618	0.96899	0.05169	0.05083	0.75329	0.75562	0.48252	0.48334	76	75	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49370	49370	SRR7892016	SRX4729582	SRS3812019	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample1 Lane2	9.I2 epi gfp 1 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample1 Lane2\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample1 Lane2	9.I2 epi gfp 1 Lane2	9.I2 epi gfp 1 Lane2	mH2A2 75% epiboly GFP sample1 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	9.I2-epi-gfp-1-Lane2-R1.fastq 9.I2-epi-gfp-1-Lane2-R2.fastq	fastq fastq	487522081.0	3231144.0	9.I2 epi gfp 1 Lane2 R1.fastq	0:75.51 1:75.38	A:125725899;C:116093393;G:120228604;T:125197332;N:276853	75	75	125725899	116093393	120228604	125197332	276853	SRX4729582	SRS3812019	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96515	0.96702	0.06617	0.06504	0.76228	0.76487	0.50462	0.50964	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49379	49379	SRR7892025	SRX4729573	SRS3812010	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A2 75% epiboly GFP sample2 Lane3	10.I2 epi gfp 2 Lane3	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo without xxx\|genotype:TgmH2A2:GFP mH2A2.\|samples information:mH2A2 75% epiboly GFP sample2 Lane3\|BioSampleModel:Model organism or animal	mH2A2 75% epiboly GFP sample1 Lane3	10.I2 epi gfp 2 Lane3	10.I2 epi gfp 2 Lane3	mH2A2 75% epiboly GFP sample2 Lane3	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	10.I2-epi-gfp-2-Lane3-R1.fastq 10.I2-epi-gfp-2-Lane3-R2.fastq	fastq fastq	283548008.0	1880401.0	10.I2 epi gfp 2 Lane3 R2.fastq	0:75.47 1:75.32	A:71164597;C:69817830;G:70971963;T:71419845;N:173773	75	75	71164597	69817830	70971963	71419845	173773	SRX4729573	SRS3812010	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96659	0.96842	0.05301	0.05119	0.75574	0.75765	0.48105	0.48291	75	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49385	49385	SRR7892031	SRX4729567	SRS3812005	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample2 Lane4	6.I1 ep woy 2 Lane4	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample2 Lane4\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample2 Lane4	6.I1 ep woy 2 Lane4	6.I1 ep woy 2 Lane4	mH2A1 75% epiboly whole embryo without xxx sample2 Lane4	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	6.I1-ep-woy-2-Lane4-R1.fastq 6.I1-ep-woy-2-Lane4-R2.fastq	fastq fastq	399315530.0	2646139.0	6.I1 ep woy 2 Lane4 R2.fastq	0:75.53 1:75.38	A:101597801;C:96127596;G:100204030;T:101154602;N:231501	75	75	101597801	96127596	100204030	101154602	231501	SRX4729567	SRS3812005	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96719	0.96886	0.06314	0.06238	0.76094	0.76546	0.47959	0.47867	75	35	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49386	49386	SRR7892032	SRX4729566	SRS3812054	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample2 Lane3	6.I1 ep woy 2 Lane3	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample2 Lane3\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample2 Lane3	6.I1 ep woy 2 Lane3	6.I1 ep woy 2 Lane3	mH2A1 75% epiboly whole embryo without xxx sample2 Lane3	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	6.I1-ep-woy-2-Lane3-R2.fastq 6.I1-ep-woy-2-Lane3-R1.fastq	fastq fastq	413007665.0	2736835.0	6.I1 ep woy 2 Lane3 R1.fastq	0:75.53 1:75.38	A:104836023;C:99402397;G:104036766;T:104479363;N:253116	75	75	104836023	99402397	104036766	104479363	253116	SRX4729566	SRS3812054	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96709	0.96695	0.06398	0.06227	0.764	0.76832	0.47279	0.48091	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49387	49387	SRR7892033	SRX4729565	SRS3812002	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample2 Lane2	6.I1 ep woy 2 Lane2	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample2 Lane2\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample2 Lane2	6.I1 ep woy 2 Lane2	6.I1 ep woy 2 Lane2	mH2A1 75% epiboly whole embryo without xxx sample2 Lane2	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	6.I1-ep-woy-2-Lane2-R1.fastq 6.I1-ep-woy-2-Lane2-R2.fastq	fastq fastq	400065434.0	2651135.0	6.I1 ep woy 2 Lane2 R1.fastq	0:75.53 1:75.38	A:101671787;C:96307451;G:100694248;T:101171404;N:220544	75	75	101671787	96307451	100694248	101171404	220544	SRX4729565	SRS3812002	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96698	0.96785	0.06431	0.0634	0.76357	0.76816	0.47461	0.47488	73	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures
49388	49388	SRR7892034	SRX4729564	SRS3812003	SRP162371	PRJNA492713	Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information	PRJNA492713	Other	Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters to study their function during embryogenesis.		mH2A1 75% epiboly whole embryo without xxx sample2 Lane1	6.I1 ep woy 2 Lane1	strain:TAB.L ABxTL\|dev stage:75% epiboly\|sex:pooled male and female\|tissue:whole embryo whitout yolk\|genotype:Tg mH2A1:GFP mH2A1\|samples information:mH2A1 75% epiboly whole embryo without xxx sample2 Lane1\|BioSampleModel:Model organism or animal	mH2A1 75% epiboly whole embryo without xxx sample2 Lane1	6.I1 ep woy 2 Lane1	6.I1 ep woy 2 Lane1	mH2A1 75% epiboly whole embryo without xxx sample2 Lane1	RNA-Seq	TRANSCRIPTOMIC	PolyA	PAIRED	ILLUMINA	NextSeq 500		SRP162371	6.I1-ep-woy-2-Lane1-R1.fastq 6.I1-ep-woy-2-Lane1-R2.fastq	fastq fastq	409551882.0	2714002.0	6.I1 ep woy 2 Lane1 R1.fastq	0:75.53 1:75.38	A:103918289;C:98573178;G:103190444;T:103638452;N:231519	75	75	103918289	98573178	103190444	103638452	231519	SRX4729564	SRS3812003	SRA782245	University of Nebraska Lincoln\|Electrical and Computer Engineering	University of Nebraska Lincoln	2	0.96801	0.96789	0.06315	0.06224	0.76025	0.76451	0.47347	0.47998	76	76	B	B	biological fallback assumption	illumina	nextseq	unknown	poly_a	unknown	bulk	unknown	unknown	United States	2019-10-21	Gastrula	Embryo	Whole Organism	All anatomical structures

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;