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6,988 rows where devstage_curation = "Adult" and technology = "unknown"

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tissue_curation >10

experiment.library_selection >10

experiment.library_strategy 8

experiment.platform 6

experiment.library_source 3

experiment.library_layout 2

technology 1

  • unknown · 6,988 ✖

devstage_curation_coarse 1

devstage_curation 1

  • Adult · 6,988 ✖
Link rowid ▼ run.accession experiment.accession sample.accession study.accession bioproject study.title study.alias study.type study.abstract study.attributes study.PMIDs sample.description sample.title sample.alias sample.centername sample.attributes GEOsample.title GEOsample.dataprocessing GEOsample.source GEOsample.treatmentprotocol GEOsample.extractprotocol GEOsample.growthprotocol GEOsample.characteristics GEOsample.accession experiment.title experiment.alias experiment.library_name experiment.design_description experiment.library_construction_protocol experiment.attributes experiment.library_strategy experiment.library_source experiment.library_selection experiment.library_layout experiment.platform experiment.instrument_model experiment.spot_descriptor experiment.study_ref run.title run.attributes run.filename run.semantic_name run.total_bases run.total_spots run.alias run.read_lengths run.base_counts run.r1_length run.r2_length run.r3_length run.r4_length run.Acount run.Ccount run.Gcount run.Tcount run.Ncount run.experiment run.pool_member submission.accession submission.srasource submission.bioprojectsource seqdetective.n_mates seqdetective.mapping_rate.mate1 seqdetective.mapping_rate.mate2 seqdetective.nofeature_rate.mate1 seqdetective.nofeature_rate.mate2 seqdetective.sparsity.mate1 seqdetective.sparsity.mate2 seqdetective.pos_strand_rate.mate1 seqdetective.pos_strand_rate.mate2 seqdetective.readlen.mate1 seqdetective.readlen.mate2 seqdetective.judgement.mate1 seqdetective.judgement.mate2 seqdetective.judgement.reason platform_family instrument_generation read_bias selection_class prep_kit sc_or_bulk tech_class technology tech_variant submission.bioprojectsource.country earliest_date devstage_curation devstage_curation_coarse tissue_curation tissue_curation_coarse
14 14 DRR334977 DRX323973 DRS217313 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 28 degrees rep 3 SAMD00422597   sample name:rRNA mock community 28 degrees rep 3|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:28|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422597 DRX323973 t28 3 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422597       3791170746.0 37701921.0 DRR334977 0:100.56 1:0 A:967477491;C:926887571;G:898697642;T:998107868;N:174 100 0     967477491 926887571 898697642 998107868 174 DRX323973 DRS217313 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.31527   0.06446   0.88844   0.62118   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
15 15 DRR334976 DRX323972 DRS217312 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 28 degrees rep 2 SAMD00422596   sample name:rRNA mock community 28 degrees rep 2|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:28|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422596 DRX323972 t28 2 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422596       2801693695.0 27860658.0 DRR334976 0:100.56 1:0 A:700189496;C:702936549;G:679920984;T:718646067;N:599 100 0     700189496 702936549 679920984 718646067 599 DRX323972 DRS217312 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.43508   0.08819   0.85859   0.69447   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
16 16 DRR334975 DRX323971 DRS217311 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 28 degrees rep 1 SAMD00422595   sample name:rRNA mock community 28 degrees rep 1|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:28|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422595 DRX323971 t28 1 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422595       3148691934.0 31307464.0 DRR334975 0:100.57 1:0 A:785000734;C:791315678;G:766594599;T:805780465;N:458 100 0     785000734 791315678 766594599 805780465 458 DRX323971 DRS217311 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.37139   0.09061   0.94065   0.74047   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
17 17 DRR334974 DRX323970 DRS217310 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 19 degrees rep 3 SAMD00422594   sample name:rRNA mock community 19 degrees rep 3|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:19|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422594 DRX323970 t19 3 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422594       2856186273.0 28400524.0 DRR334974 0:100.57 1:0 A:695685787;C:733754277;G:715270279;T:711475544;N:386 100 0     695685787 733754277 715270279 711475544 386 DRX323970 DRS217310 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.48152   0.10933   0.87105   0.7287   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
18 18 DRR334973 DRX323969 DRS217309 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 19 degrees rep 2 SAMD00422593   sample name:rRNA mock community 19 degrees rep 2|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:19|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422593 DRX323969 t19 2 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422593       3199929804.0 31816971.0 DRR334973 0:100.57 1:0 A:777149590;C:825478743;G:804835148;T:792466124;N:199 100 0     777149590 825478743 804835148 792466124 199 DRX323969 DRS217309 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.4418   0.10282   0.89706   0.74667   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
19 19 DRR334972 DRX323968 DRS217308 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 19 degrees rep 1 SAMD00422592   sample name:rRNA mock community 19 degrees rep 1|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:19|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422592 DRX323968 t19 1 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422592       3658675391.0 36374718.0 DRR334972 0:100.58 1:0 A:879342063;C:954687406;G:929537615;T:895107890;N:417 100 0     879342063 954687406 929537615 895107890 417 DRX323968 DRS217308 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.49439   0.11691   0.88239   0.73925   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
20 20 DRR334971 DRX323967 DRS217307 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 10 degrees rep 3 SAMD00422591   sample name:rRNA mock community 10 degrees rep 3|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:10|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422591 DRX323967 t10 3 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422591       3017524690.0 30006334.0 DRR334971 0:100.56 1:0 A:771967717;C:738814269;G:712866126;T:793876235;N:343 100 0     771967717 738814269 712866126 793876235 343 DRX323967 DRS217307 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.33157   0.07363   0.9093   0.73422   100   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
21 21 DRR334970 DRX323966 DRS217306 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 10 degrees rep 2 SAMD00422590   sample name:rRNA mock community 10 degrees rep 2|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:10|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422590 DRX323966 t10 2 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422590       3115915184.0 30982336.0 DRR334970 0:100.57 1:0 A:765727966;C:794741415;G:771082024;T:784363609;N:170 100 0     765727966 794741415 771082024 784363609 170 DRX323966 DRS217306 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.45458   0.10504   0.89357   0.749   100   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
22 22 DRR334969 DRX323965 DRS217305 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     totalRNA metatranscriptomic sequences from mock communities consist of five model species rRNA mock community at 10 degrees rep 1 SAMD00422589   sample name:rRNA mock community 10 degrees rep 1|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:10|treatment:rRNA                 NextSeq 2000 sequencing of SAMD00422589 DRX323965 t10 1 tRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC cDNA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422589       3206657309.0 31883532.0 DRR334969 0:100.57 1:0 A:792874386;C:814578518;G:787469614;T:811734581;N:210 100 0     792874386 814578518 787469614 811734581 210 DRX323965 DRS217305 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.40156   0.09664   0.92898   0.74114   101   B   usable mapping rate illumina nextseq_v2 unknown random_priming nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
23 23 DRR334968 DRX323964 DRS217304 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 28 degrees rep 3 SAMD00422588   sample name:mRNA mock community 28 degrees rep 3|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:28|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422588 DRX323964 m28 3 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422588       3157078356.0 31416275.0 DRR334968 0:100.49 1:0 A:816263259;C:752748024;G:759884392;T:828182261;N:420 100 0     816263259 752748024 759884392 828182261 420 DRX323964 DRS217304 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.64888   0.01832   0.73996   0.46811   99   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
24 24 DRR334967 DRX323963 DRS217303 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 28 degrees rep 2 SAMD00422587   sample name:mRNA mock community 28 degrees rep 2|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:28|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422587 DRX323963 m28 2 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422587       3155807651.0 31404635.0 DRR334967 0:100.49 1:0 A:819014350;C:749873295;G:756284406;T:830635394;N:206 100 0     819014350 749873295 756284406 830635394 206 DRX323963 DRS217303 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.76742   0.02238   0.72427   0.47376   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
25 25 DRR334966 DRX323962 DRS217302 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 28 degrees rep 1 SAMD00422586   sample name:mRNA mock community 28 degrees rep 1|biological replicate:3|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:28|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422586 DRX323962 m28 1 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422586       2589772286.0 25765782.0 DRR334966 0:100.51 1:0 A:679223577;C:610675892;G:617869465;T:682003195;N:157 100 0     679223577 610675892 617869465 682003195 157 DRX323962 DRS217302 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.42984   0.03367   0.73555   0.49223   100   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
26 26 DRR334965 DRX323961 DRS217318 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 19 degrees rep 3 SAMD00422602   sample name:mRNA mock community 19 degrees rep 3|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:19|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422602 DRX323961 m19 3 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422602       3124746628.0 31095367.0 DRR334965 0:100.49 1:0 A:821891547;C:734660854;G:739230475;T:828963220;N:532 100 0     821891547 734660854 739230475 828963220 532 DRX323961 DRS217318 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.72881   0.03264   0.69449   0.47416   99   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
27 27 DRR334964 DRX323960 DRS217317 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 19 degrees rep 2 SAMD00422601   sample name:mRNA mock community 19 degrees rep 2|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:19|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422601 DRX323960 m19 2 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422601       3171661466.0 31561473.0 DRR334964 0:100.49 1:0 A:836793307;C:742872021;G:750053514;T:841942389;N:235 100 0     836793307 742872021 750053514 841942389 235 DRX323960 DRS217317 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.63153   0.03639   0.69027   0.48494   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
28 28 DRR334963 DRX323959 DRS217316 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 19 degrees rep 1 SAMD00422600   sample name:mRNA mock community 19 degrees rep 1|biological replicate:2|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:19|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422600 DRX323959 m19 1 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422600       2916453082.0 29023768.0 DRR334963 0:100.48 1:0 A:761416880;C:692014182;G:696272089;T:766749729;N:202 100 0     761416880 692014182 696272089 766749729 202 DRX323959 DRS217316 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.71651   0.03406   0.68696   0.47496   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
29 29 DRR334962 DRX323958 DRS217315 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 10 degrees rep 3 SAMD00422599   sample name:mRNA mock community 10 degrees rep 3|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:3|temp:10|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422599 DRX323958 m10 3 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422599       2600103192.0 25872833.0 DRR334962 0:100.50 1:0 A:668944597;C:625686885;G:631010166;T:674461210;N:334 100 0     668944597 625686885 631010166 674461210 334 DRX323958 DRS217315 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.57077   0.02949   0.71918   0.47633   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
30 30 DRR334961 DRX323957 DRS217314 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 10 degrees rep 2 SAMD00422598   sample name:mRNA mock community 10 degrees rep 2|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:2|temp:10|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422598 DRX323957 m10 2 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422598       2608660833.0 25958804.0 DRR334961 0:100.49 1:0 A:683370128;C:615324906;G:621209484;T:688756167;N:148 100 0     683370128 615324906 621209484 688756167 148 DRX323957 DRS217314 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.63764   0.04316   0.69656   0.48579   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
31 31 DRR334960 DRX323956 DRS217301 DRP008001 PRJDB12578 Allometric scaling of RNA abundance from genes to communities DRP008001 Other The metabolic theory of ecology MTE and growth rate hypothesis GRH help explain the mechanistic basis of size allometry and temperature dependence on growth rate and whole body RNA content in organisms. However testing RNA allometric scaling with next generation sequencing is yet to be done. Here we validated the assumptions of GRH and MTE on messenger RNA and ribosome abundance using mock community metatranscriptome analysis. Our findings highlight that fast growing smaller species harbor greater RNA abundance per mass of tissue compared with species having larger body sizes and slower growth rates. We found that genome size and body size impose significant constraints in interspecific RNA abundance scaling while the assumed temperature dependence appeared to be weak. Lastly allometric scaling integration in community level models may extend the use of metatranscriptomics as a reliable tool for estimating ecosystem processes.     mRNA metatranscriptomic sequences from mock communities consist of five model species mRNA mock community at 10 degrees rep 1 SAMD00422585   sample name:mRNA mock community 10 degrees rep 1|biological replicate:1|collection date:2021 01 15|dev stage:Adult|technical replicate:1|temp:10|treatment:mRNA                 NextSeq 2000 sequencing of SAMD00422585 DRX323956 m10 1 mRNA.fastq 1 NEBNext Kit for Illumina   RNA-Seq METATRANSCRIPTOMIC PolyA SINGLE ILLUMINA NextSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>101</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP008001 NextSeq 2000 sequencing of SAMD00422585       2879915507.0 28651533.0 DRR334960 0:100.52 1:0 A:761972464;C:675761096;G:678969165;T:763212637;N:145 100 0     761972464 675761096 678969165 763212637 145 DRX323956 DRS217301 DRA013226 SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica SINICA|Machida Laboratory Biodiversity Research Center, Academia Sinica 1 0.47851   0.05671   0.72622   0.49269   101   B   usable mapping rate illumina nextseq_v2 unknown poly_a nebnext bulk unknown unknown   Taiwan 2021-12-23 Adult Adult Undetermined Undetermined
32 32 DRR408242 DRX393848 DRS407006 DRP012035 PRJDB14274 Zebrafish Gut RNA seq. DRP012035 Transcriptome Analysis A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.     zebrafish wild type AB adult gut replicate 3 zebrafish adult gut replicate 3 SAMD00529462   sample name:zebrafish adult gut replicate 3|biological replicate:adult 3|strain:AB                 Illumina HiSeq 1500 sequencing of SAMD00529462 DRX393848 AR019 gut 6 adult 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012035 Illumina HiSeq 1500 sequencing of SAMD00529462       3546347364.0 28145614.0 DRR408242 0:126 1:0 A:919466631;C:829424335;G:818581155;T:978810217;N:65026 126 0     919466631 829424335 818581155 978810217 65026 DRX393848 DRS407006 DRA014885 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B   usable mapping rate illumina hiseq_era unknown random_priming trueseq bulk unknown unknown   Japan 2024-09-20 Adult Adult Gut Digestive System
33 33 DRR408241 DRX393847 DRS407005 DRP012035 PRJDB14274 Zebrafish Gut RNA seq. DRP012035 Transcriptome Analysis A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.     zebrafish wild type AB adult gut replicate 2 zebrafish adult gut replicate 2 SAMD00529461   sample name:zebrafish adult gut replicate 2|biological replicate:adult 2|strain:AB                 Illumina HiSeq 1500 sequencing of SAMD00529461 DRX393847 AR006 gut 4 adult 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012035 Illumina HiSeq 1500 sequencing of SAMD00529461       3671973648.0 29142648.0 DRR408241 0:126 1:0 A:942167543;C:859431290;G:852661772;T:1017643011;N:70032 126 0     942167543 859431290 852661772 1017643011 70032 DRX393847 DRS407005 DRA014885 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B   usable mapping rate illumina hiseq_era unknown random_priming trueseq bulk unknown unknown   Japan 2024-09-20 Adult Adult Gut Digestive System
34 34 DRR408240 DRX393846 DRS407004 DRP012035 PRJDB14274 Zebrafish Gut RNA seq. DRP012035 Transcriptome Analysis A project to find differential expressed genes between larval and adult zebrafish gut. We dissected guts of wild type AB line and prepared three duplicates for each of larval and adult gut. Libraries for NGS are prepared using illumina TruSeq standard mRNA sample prep kit.     zebrafish wild type AB adult gut replicate 1 zebrafish adult gut replicate 1 SAMD00529460   sample name:zebrafish adult gut replicate 1|biological replicate:adult 1|strain:AB                 Illumina HiSeq 1500 sequencing of SAMD00529460 DRX393846 AR004 gut 2 adult 1 1   RNA-Seq TRANSCRIPTOMIC RANDOM SINGLE ILLUMINA Illumina HiSeq 1500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>126</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP012035 Illumina HiSeq 1500 sequencing of SAMD00529460       3480523704.0 27623204.0 DRR408240 0:126 1:0 A:898051986;C:827557593;G:816541244;T:938307607;N:65274 126 0     898051986 827557593 816541244 938307607 65274 DRX393846 DRS407004 DRA014885 NIBB|NIBB core research facilities, National Institute for Basic Biology University of Hyogo                       B   usable mapping rate illumina hiseq_era unknown random_priming trueseq bulk unknown unknown   Japan 2024-09-20 Adult Adult Gut Digestive System
44 44 DRR668250 DRX648352 DRS458865 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 3 Zebrafish 2wpi 3 SAMD00799623   sample name:Zebrafish 2wpi 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 25|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799623 DRX648352 RNA seq of spinal cord in zebrafish at 2wpi injured 3 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799623       14782516800.0 73912584.0 DRR668250 0:100 1:100 A:4058090278;C:3335994894;G:3323563782;T:4062467903;N:2399943 100 100     4058090278 3335994894 3323563782 4062467903 2399943 DRX648352 DRS458865 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
45 45 DRR668249 DRX648351 DRS458864 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 2 Zebrafish 2wpi 2 SAMD00799622   sample name:Zebrafish 2wpi 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799622 DRX648351 RNA seq of spinal cord in zebrafish at 2wpi injured 2 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799622       13687641800.0 68438209.0 DRR668249 0:100 1:100 A:3759784620;C:3087398782;G:3083881581;T:3754378915;N:2197902 100 100     3759784620 3087398782 3083881581 3754378915 2197902 DRX648351 DRS458864 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
46 46 DRR668248 DRX648350 DRS458863 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish 2 weeks post spinal cord injury replicate 1 Zebrafish 2wpi 1 SAMD00799621   sample name:Zebrafish 2wpi 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 14|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799621 DRX648350 RNA seq of spinal cord in zebrafish at 2wpi injured 1 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799621       16376197200.0 81880986.0 DRR668248 0:100 1:100 A:4485868844;C:3700974430;G:3710833937;T:4475827800;N:2692189 100 100     4485868844 3700974430 3710833937 4475827800 2692189 DRX648350 DRS458863 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
47 47 DRR668247 DRX648349 DRS458862 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 3 Zebrafish Control 3 SAMD00799620   sample name:Zebrafish Control 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799620 DRX648349 RNA seq of spinal cord in zebrafish at 0wpi control 3 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799620       13377538600.0 66887693.0 DRR668247 0:100 1:100 A:3725064764;C:2973653932;G:2980883214;T:3695767890;N:2168800 100 100     3725064764 2973653932 2980883214 3695767890 2168800 DRX648349 DRS458862 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
48 48 DRR668246 DRX648348 DRS458861 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 2 Zebrafish Control 2 SAMD00799619   sample name:Zebrafish Control 2|biological replicate:2|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799619 DRX648348 RNA seq of spinal cord in zebrafish at 0wpi control 2 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799619       14971411400.0 74857057.0 DRR668246 0:100 1:100 A:4160326445;C:3329083037;G:3329123314;T:4150453700;N:2424904 100 100     4160326445 3329083037 3329123314 4150453700 2424904 DRX648348 DRS458861 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
49 49 DRR668245 DRX648347 DRS458860 DRP012880 PRJDB18466 Comparison of spinal cord regeneration capacity in zebrafish and medaka PRJDB18466 Other Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability.   pubmed:40278963 Zebrafish Intact biological replicate 1 Zebrafish Control 1 SAMD00799618   sample name:Zebrafish Control 1|biological replicate:1|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2024 05 04|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord                 DNBSEQ G400 paired end sequencing of SAMD00799618 DRX648347 RNA seq of spinal cord in zebrafish at 0wpi control 1 1 Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED DNBSEQ DNBSEQ-G400   DRP012880 DNBSEQ G400 paired end sequencing of SAMD00799618       13912523800.0 69562619.0 DRR668245 0:100 1:100 A:3888902049;C:3079617959;G:3075111814;T:3866655202;N:2236776 100 100     3888902049 3079617959 3075111814 3866655202 2236776 DRX648347 DRS458860 DRA020617 Osaka University Osaka University                       B B biological fallback assumption bgi bgi unknown cdna_unspecified unknown bulk unknown unknown   Japan 2025-05-12 Adult Adult Spinal Cord Nervous System
50 50 DRR029944 DRX026962 DRS086502 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     ovulation duirng natural paring zebrafish ovary isolated from adult fish at ovulation duirng natural paring. [RNAseq] SAMD00025434   sample name:6 Ovu|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025434 DRX026962 6 Ovu 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025434       351766656.0 9771296.0 DRR029944 0:36 A:79811727;C:85391142;G:90185809;T:96371771;N:6207 36       79811727 85391142 90185809 96371771 6207 DRX026962 DRS086502 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91956   0.01686   0.76637   0.45997   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
51 51 DRR029943 DRX026961 DRS086501 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     oocyte maturation duirng natural paring zebrafish ovary isolated from adult fish at oocyte maturation duirng natural paring. [RNAseq] SAMD00025433   sample name:5 OM|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025433 DRX026961 5 OM 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025433       573617016.0 15933806.0 DRR029943 0:36 A:130606804;C:141376330;G:145891720;T:155734276;N:7886 36       130606804 141376330 145891720 155734276 7886 DRX026961 DRS086501 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91108   0.0173   0.76205   0.46319   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Multi-tissue Multi-system
52 52 DRR029942 DRX026960 DRS086500 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo testosterone treatment zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq replicate] SAMD00025432   sample name:4 Tes rep|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025432 DRX026960 4 Tes rep 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025432       366042528.0 10167848.0 DRR029942 0:36 A:84988522;C:88640326;G:93559022;T:98847003;N:7655 36       84988522 88640326 93559022 98847003 7655 DRX026960 DRS086500 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91602   0.01846   0.76015   0.46475   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
53 53 DRR029941 DRX026959 DRS086499 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo testosterone treatment zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq] SAMD00025431   sample name:4 Tes|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025431 DRX026959 4 Tes 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025431       1269835992.0 35273222.0 DRR029941 0:36 A:275250658;C:323605136;G:316729009;T:354204170;N:47019 36       275250658 323605136 316729009 354204170 47019 DRX026959 DRS086499 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91467   0.02353   0.75962   0.46861   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
54 54 DRR029940 DRX026958 DRS086498 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo diethylstilbestrol DES treatment zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq replicate] SAMD00025430   sample name:3 DES rep|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025430 DRX026958 3 DES rep 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025430       658651536.0 18295876.0 DRR029940                       DRX026958 DRS086498 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.89964   0.01785   0.76451   0.45872   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
55 55 DRR029939 DRX026957 DRS086497 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo diethylstilbestrol DES treatment zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq] SAMD00025429   sample name:3 DES|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025429 DRX026957 3 DES 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025429       1202024016.0 33389556.0 DRR029939 0:36 A:263319430;C:305852921;G:298798093;T:334008544;N:45028 36       263319430 305852921 298798093 334008544 45028 DRX026957 DRS086497 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90643   0.02337   0.75008   0.47587   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
56 56 DRR029938 DRX026956 DRS086496 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo maturation inducing hormone DHP treatment zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq replicate] SAMD00025428   sample name:2 DHP rep|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025428 DRX026956 2 DHP rep 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025428       434243088.0 12062308.0 DRR029938 0:36 A:99859342;C:105890785;G:110526688;T:117957580;N:8693 36       99859342 105890785 110526688 117957580 8693 DRX026956 DRS086496 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91529   0.02061   0.7595   0.45809   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
57 57 DRR029937 DRX026955 DRS086495 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo maturation inducing hormone DHP treatment zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq] SAMD00025427   sample name:2 DHP|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025427 DRX026955 2 DHP 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025427       1463868972.0 40663027.0 DRR029937 0:36 A:316060780;C:369221844;G:372845502;T:405685804;N:55042 36       316060780 369221844 372845502 405685804 55042 DRX026955 DRS086495 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91556   0.01967   0.76621   0.46541   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
58 58 DRR029936 DRX026954 DRS086494 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo ethanol treatment zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq replicate] SAMD00025426   sample name:1 EtOH rep|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025426 DRX026954 1 EtOH rep 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025426       438020208.0 12167228.0 DRR029936 0:36 A:101672612;C:105602774;G:110120652;T:120615069;N:9101 36       101672612 105602774 110120652 120615069 9101 DRX026954 DRS086494 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90777   0.01929   0.7652   0.45988   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
59 59 DRR029935 DRX026953 DRS086493 DRP004756 PRJDB3475 Identification of ovulation inducing genes selected by the method for in vivo induction of oocyte maturation and ovulation in zebrafish DRP004756 Other To identify ovulation inducing genes RNAseq analysis was carried out using samples prepared by in vivo assay system in zebrafish.     in vivo ethanol treatment zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq] SAMD00025425   sample name:1 EtOH|strain:roy|tissue type:ovary|dev stage:adult                 Illumina HiSeq 2500 sequencing of SAMD00025425 DRX026953 1 EtOH 1 1   RNA-Seq TRANSCRIPTOMIC cDNA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004756 Illumina HiSeq 2500 sequencing of SAMD00025425       1365603372.0 37933427.0 DRR029935 0:36 A:299786286;C:345487829;G:342408447;T:377870789;N:50021 36       299786286 345487829 342408447 377870789 50021 DRX026953 DRS086493 DRA003031 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91103   0.02142   0.75402   0.46574   36   B   usable mapping rate illumina hiseq_era unknown cdna_unspecified unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
104 104 DRR189400 DRX179865 DRS200401 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 3 SAMD00182243   sample name:CSUS Tel 30 1d memory 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182243 DRX179865 CSUS Tel 30 1d memory 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182243       1340808120.0 37244670.0 DRR189400 0:36 A:330513975;C:306935584;G:320089399;T:383165274;N:103888 36       330513975 306935584 320089399 383165274 103888 DRX179865 DRS200401 DRA008864 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89272   0.19494   0.70335   0.49456   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
105 105 DRR189399 DRX179864 DRS200400 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 2 SAMD00182242   sample name:CSUS Tel 30 1d memory 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182242 DRX179864 CSUS Tel 30 1d memory 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182242       1279740096.0 35548336.0 DRR189399 0:36 A:314850837;C:294188093;G:304654881;T:365946483;N:99802 36       314850837 294188093 304654881 365946483 99802 DRX179864 DRS200400 DRA008864 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89485   0.18205   0.70593   0.49333   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
106 106 DRR189398 DRX179863 DRS200399 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 30 min post test session of 1 day memory test in non trace 2 Way Active Avoidance coditioning 1 SAMD00182241   sample name:CSUS Tel 30 1d memory 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182241 DRX179863 CSUS Tel 30 1d memory 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182241       3012353100.0 83676475.0 DRR189398 0:36 A:740795057;C:693120664;G:717419185;T:860784745;N:233449 36       740795057 693120664 717419185 860784745 233449 DRX179863 DRS200399 DRA008864 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89676   0.1791   0.70569   0.49835   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
107 107 DRR189397 DRX179862 DRS200428 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 3 SAMD00182240   sample name:Cont Tel 60 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182240 DRX179862 Cont Tel 60 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182240       5590147750.0 111802955.0 DRR189397 0:50 A:1365131560;C:1269631295;G:1366791321;T:1588422020;N:171554 50       1365131560 1269631295 1366791321 1588422020 171554 DRX179862 DRS200428 DRA008863 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89334   0.16354   0.7011   0.49383   50   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
108 108 DRR189396 DRX179861 DRS200427 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 2 SAMD00182239   sample name:Cont Tel 60 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182239 DRX179861 Cont Tel 60 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182239       6429019650.0 128580393.0 DRR189396 0:50 A:1570141412;C:1457539089;G:1572785681;T:1828358007;N:195461 50       1570141412 1457539089 1572785681 1828358007 195461 DRX179861 DRS200427 DRA008863 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89595   0.16204   0.70743   0.49805   50   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
109 109 DRR189395 DRX179860 DRS200426 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post exposure to the conditioning tank 1 SAMD00182238   sample name:Cont Tel 60 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182238 DRX179860 Cont Tel 60 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182238       6644185850.0 132883717.0 DRR189395 0:50 A:1637322491;C:1498943556;G:1616212676;T:1891505597;N:201530 50       1637322491 1498943556 1616212676 1891505597 201530 DRX179860 DRS200426 DRA008863 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89573   0.16421   0.7037   0.49805   50   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
110 110 DRR189394 DRX179859 DRS200407 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 3 SAMD00182237   sample name:CS Tel 60 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182237 DRX179859 CS Tel 60 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182237       1387078956.0 38529971.0 DRR189394 0:36 A:333990578;C:315361737;G:337599372;T:400057968;N:69301 36       333990578 315361737 337599372 400057968 69301 DRX179859 DRS200407 DRA008862 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.88133   0.18418   0.70747   0.4971   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
111 111 DRR189393 DRX179858 DRS200406 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 2 SAMD00182236   sample name:CS Tel 60 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182236 DRX179858 CS Tel 60 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182236       537029424.0 14917484.0 DRR189393 0:36 A:127421487;C:122494467;G:132164579;T:154921150;N:27741 36       127421487 122494467 132164579 154921150 27741 DRX179858 DRS200406 DRA008862 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.88264   0.17793   0.7083   0.49123   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
112 112 DRR189392 DRX179857 DRS200405 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light stimulation in the conditioning tank 1 SAMD00182235   sample name:CS Tel 60 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182235 DRX179857 CS Tel 60 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182235       3163663656.0 87879546.0 DRR189392 0:36 A:766146692;C:714108562;G:771785405;T:911468887;N:154110 36       766146692 714108562 771785405 911468887 154110 DRX179857 DRS200405 DRA008862 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.88114   0.1803   0.7052   0.4917   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
113 113 DRR189391 DRX179856 DRS200404 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 3 SAMD00182234   sample name:US Tel 60 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182234 DRX179856 US Tel 60 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182234       1535884704.0 42663464.0 DRR189391 0:36 A:367444721;C:350978310;G:375524359;T:441859454;N:77860 36       367444721 350978310 375524359 441859454 77860 DRX179856 DRS200404 DRA008861 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.88103   0.1788   0.7082   0.49462   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
114 114 DRR189390 DRX179855 DRS200403 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 2 SAMD00182233   sample name:US Tel 60 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182233 DRX179855 US Tel 60 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182233       737309916.0 20480831.0 DRR189390 0:36 A:176982713;C:168284406;G:179343270;T:212662841;N:36686 36       176982713 168284406 179343270 212662841 36686 DRX179855 DRS200403 DRA008861 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.87995   0.18515   0.70816   0.49393   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
115 115 DRR189389 DRX179854 DRS200402 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post electrical shock delivery in the conditioning tank 1 SAMD00182232   sample name:US Tel 60 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182232 DRX179854 US Tel 60 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182232       595837404.0 16551039.0 DRR189389 0:36 A:143956004;C:134783754;G:145443580;T:171624939;N:29127 36       143956004 134783754 145443580 171624939 29127 DRX179854 DRS200402 DRA008861 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.87682   0.18328   0.70309   0.49081   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
116 116 DRR189388 DRX179853 DRS200452 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 3 SAMD00182231   sample name:CSUS Tel 60 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182231 DRX179853 CSUS Tel 60 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182231       608050044.0 16890279.0 DRR189388 0:36 A:145025778;C:137906052;G:149542672;T:175545338;N:30204 36       145025778 137906052 149542672 175545338 30204 DRX179853 DRS200452 DRA008860 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.87983   0.18602   0.70445   0.49195   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
117 117 DRR189387 DRX179852 DRS200451 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 2 SAMD00182230   sample name:CSUS Tel 60 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182230 DRX179852 CSUS Tel 60 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182230       777589452.0 21599707.0 DRR189387 0:36 A:185463269;C:177742981;G:190443063;T:223900096;N:40043 36       185463269 177742981 190443063 223900096 40043 DRX179852 DRS200451 DRA008860 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.88331   0.17918   0.70516   0.48956   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
118 118 DRR189386 DRX179851 DRS200450 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of adult zebrafrish 60 min post light and electrical shock association in non trace 2 Way Active Avoidance coditioning 1 SAMD00182229   sample name:CSUS Tel 60 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182229 DRX179851 CSUS Tel 60 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182229       2738622348.0 76072843.0 DRR189386 0:36 A:662989485;C:622023190;G:663013857;T:790459930;N:135886 36       662989485 622023190 663013857 790459930 135886 DRX179851 DRS200450 DRA008860 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.87743   0.19164   0.70025   0.49073   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
119 119 DRR189385 DRX179850 DRS200435 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of EMX3 / adult zebrafish 3 SAMD00182228   sample name:Emx3 Adult Tel 3|genotype:Emx3 / |tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182228 DRX179850 Emx3 / Adult Tel 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182228       1323636552.0 36767682.0 DRR189385 0:36 A:309582925;C:310206951;G:325673647;T:378136039;N:36990 36       309582925 310206951 325673647 378136039 36990 DRX179850 DRS200435 DRA008859 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.8932   0.19244   0.71334   0.50591   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
120 120 DRR189384 DRX179849 DRS200434 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of EMX3 / adult zebrafish 2 SAMD00182227   sample name:Emx3 Adult Tel 2|genotype:Emx3 / |tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182227 DRX179849 Emx3 / Adult Tel 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182227       2994105168.0 83169588.0 DRR189384 0:36 A:709730692;C:691531995;G:727245229;T:865514929;N:82323 36       709730692 691531995 727245229 865514929 82323 DRX179849 DRS200434 DRA008859 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.90382   0.1826   0.70197   0.49719   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
121 121 DRR189383 DRX179848 DRS200433 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of EMX3 / adult zebrafish 1 SAMD00182226   sample name:Emx3 Adult Tel 1|genotype:Emx3 / |tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182226 DRX179848 Emx3 / Adult Tel 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182226       1151464896.0 31985136.0 DRR189383 0:36 A:272427216;C:266708394;G:280781178;T:331515997;N:32111 36       272427216 266708394 280781178 331515997 32111 DRX179848 DRS200433 DRA008859 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89942   0.17402   0.70364   0.49438   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
122 122 DRR189382 DRX179847 DRS200421 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of wild type adult zebrafish 3 SAMD00182225   sample name:WT Adult Tel 3|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182225 DRX179847 WT Adult Tel 3 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182225       2837488824.0 78819134.0 DRR189382 0:36 A:678395895;C:655098137;G:687520693;T:816395518;N:78581 36       678395895 655098137 687520693 816395518 78581 DRX179847 DRS200421 DRA008858 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89483   0.18623   0.70544   0.49839   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
123 123 DRR189381 DRX179846 DRS200420 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of wild type adult zebrafish 2 SAMD00182224   sample name:WT Adult Tel 2|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182224 DRX179846 WT Adult Tel 2 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182224       1456800264.0 40466674.0 DRR189381 0:36 A:345320431;C:336838149;G:356264798;T:418336552;N:40334 36       345320431 336838149 356264798 418336552 40334 DRX179846 DRS200420 DRA008858 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89496   0.18691   0.70802   0.49721   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
124 124 DRR189380 DRX179845 DRS200419 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Telencephalon of wild type adult zebrafish 1 SAMD00182223   sample name:WT Adult Tel 1|genotype:wild type|tissue:brain                 Illumina HiSeq 3000 sequencing of SAMD00182223 DRX179845 WT Adult Tel 1 1 SureSelect Strand Specific RNA Library Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 3000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 3000 sequencing of SAMD00182223       2533282452.0 70368957.0 DRR189380 0:36 A:602595083;C:585466052;G:616064286;T:729086926;N:70105 36       602595083 585466052 616064286 729086926 70105 DRX179845 DRS200419 DRA008858 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 1 0.89412   0.19005   0.70816   0.49843   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
131 131 DRR189373 DRX179838 DRS200446 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 3 SAMD00182216   sample name:Cell Tel 3|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182216 DRX179838 Cell Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182216       4142772200.0 20713861.0 DRR189373 0:100 1:100 A:1185533233;C:877739936;G:877025820;T:1202041821;N:431390 100 100     1185533233 877739936 877025820 1202041821 431390 DRX179838 DRS200446 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.9018 0.90073 0.24953 0.25062 0.67884 0.67957 0.49957 0.5402 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
132 132 DRR189372 DRX179837 DRS200445 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 2 SAMD00182215   sample name:Cell Tel 2|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182215 DRX179837 Cell Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182215       5233184600.0 26165923.0 DRR189372 0:100 1:100 A:1522745973;C:1082449570;G:1076728796;T:1550682585;N:577676 100 100     1522745973 1082449570 1076728796 1550682585 577676 DRX179837 DRS200445 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89481 0.89419 0.27137 0.27018 0.67639 0.67671 0.54949 0.55323 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
133 133 DRR189371 DRX179836 DRS200444 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       Dissociated cells from telencephalon of wild type adult zebrafish 1 SAMD00182214   sample name:Cell Tel 1|genotype:wild type|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182214 DRX179836 Cell Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182214       4407578800.0 22037894.0 DRR189371 0:100 1:100 A:1270948410;C:923917605;G:922122984;T:1290126238;N:463563 100 100     1270948410 923917605 922122984 1290126238 463563 DRX179836 DRS200444 DRA008855 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90057 0.90117 0.24092 0.24074 0.67598 0.67775 0.53184 0.53433 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
134 134 DRR189370 DRX179835 DRS200415 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 5 SAMD00182213   sample name:h62A GFP Tel 5|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182213 DRX179835 h62A GFP Tel 5 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182213       2904332400.0 14521662.0 DRR189370 0:100 1:100 A:821602205;C:620206517;G:623738781;T:838474359;N:310538 100 100     821602205 620206517 623738781 838474359 310538 DRX179835 DRS200415 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91925 0.91942 0.14636 0.14584 0.71127 0.71429 0.62818 0.40804 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
135 135 DRR189369 DRX179834 DRS200414 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 4 SAMD00182212   sample name:h62A GFP Tel 4|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182212 DRX179834 h62A GFP Tel 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182212       4670374000.0 23351870.0 DRR189369 0:100 1:100 A:1294304230;C:1030286884;G:1032728119;T:1312561064;N:493703 100 100     1294304230 1030286884 1032728119 1312561064 493703 DRX179834 DRS200414 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.92587 0.92725 0.12279 0.12312 0.71056 0.71293 0.57854 0.57882 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
136 136 DRR189368 DRX179833 DRS200413 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 3 SAMD00182211   sample name:h62A GFP Tel 3|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182211 DRX179833 h62A GFP Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182211       11487645000.0 57438225.0 DRR189368 0:100 1:100 A:3127119396;C:2611288030;G:2547219656;T:3194997425;N:7020493 100 100     3127119396 2611288030 2547219656 3194997425 7020493 DRX179833 DRS200413 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91389 0.91371 0.11188 0.11336 0.74576 0.74639 0.56209 0.56027 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
137 137 DRR189367 DRX179832 DRS200412 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 2 SAMD00182210   sample name:h62A GFP Tel 2|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182210 DRX179832 h62A GFP Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182210       13536257200.0 67681286.0 DRR189367 0:100 1:100 A:3723068804;C:3049411151;G:2951685691;T:3803778575;N:8312979 100 100     3723068804 3049411151 2951685691 3803778575 8312979 DRX179832 DRS200412 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.9136 0.91493 0.14102 0.14249 0.70534 0.70569 0.58385 0.58171 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
138 138 DRR189366 DRX179831 DRS200411 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of h62A;UAS:GFP adult zebrafish 1 SAMD00182209   sample name:h62A GFP Tel 1|genotype:hspGFF62A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182209 DRX179831 h62A GFP Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182209       13057029600.0 65285148.0 DRR189366 0:100 1:100 A:3609997372;C:2912841795;G:2821782510;T:3704302917;N:8105006 100 100     3609997372 2912841795 2821782510 3704302917 8105006 DRX179831 DRS200411 DRA008854 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90766 0.90786 0.13813 0.14007 0.73677 0.73777 0.55675 0.55743 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
139 139 DRR189365 DRX179830 DRS200432 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 4 SAMD00182208   sample name:120A GFP Tel 4|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2000 paired end sequencing of SAMD00182208 DRX179830 120A GFP Tel 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2000 paired end sequencing of SAMD00182208       4105132200.0 20525661.0 DRR189365 0:100 1:100 A:1171500567;C:874901685;G:872257219;T:1186025546;N:447183 100 100     1171500567 874901685 872257219 1186025546 447183 DRX179830 DRS200432 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91106 0.90924 0.18729 0.18688 0.69406 0.69589 0.51697 0.51253 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
140 140 DRR189364 DRX179829 DRS200431 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 3 SAMD00182207   sample name:120A GFP Tel 3|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182207 DRX179829 120A GFP Tel 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182207       5062007400.0 25310037.0 DRR189364 0:100 1:100 A:1425414609;C:1105334563;G:1072448536;T:1458726402;N:83290 100 100     1425414609 1105334563 1072448536 1458726402 83290 DRX179829 DRS200431 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89598 0.89539 0.2645 0.2668 0.69591 0.6971 0.49901 0.49932 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
141 141 DRR189363 DRX179828 DRS200430 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 2 SAMD00182206   sample name:120A GFP Tel 2|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182206 DRX179828 120A GFP Tel 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182206       4148886200.0 20744431.0 DRR189363 0:100 1:100 A:1121946535;C:959659540;G:901840216;T:1165367793;N:72116 100 100     1121946535 959659540 901840216 1165367793 72116 DRX179828 DRS200430 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89808 0.89803 0.14106 0.14229 0.74057 0.74073 0.58127 0.58258 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
142 142 DRR189362 DRX179827 DRS200429 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form telencephalon of SAGFF120A;UAS:GFP adult zebrafish 1 SAMD00182205   sample name:120A GFP Tel 1|genotype:SAGFF120A;UAS:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182205 DRX179827 120A GFP Tel 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182205       5621230800.0 28106154.0 DRR189362 0:100 1:100 A:1511319423;C:1299516107;G:1236814355;T:1573482053;N:98862 100 100     1511319423 1299516107 1236814355 1573482053 98862 DRX179827 DRS200429 DRA008853 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.90171 0.90205 0.11967 0.12059 0.74083 0.74113 0.61779 0.61682 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
143 143 DRR189361 DRX179826 DRS200425 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 4 SAMD00182204   sample name:HuC GFP WB 4|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182204 DRX179826 HuC GFP WB 4 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182204       3641515200.0 18207576.0 DRR189361 0:100 1:100 A:1038686472;C:777269450;G:777179582;T:1047994354;N:385342 100 100     1038686472 777269450 777179582 1047994354 385342 DRX179826 DRS200425 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91246 0.9127 0.18566 0.18547 0.70201 0.7024 0.47049 0.47102 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
144 144 DRR189360 DRX179825 DRS200424 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 3 SAMD00182203   sample name:HuC GFP WB 3|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182203 DRX179825 HuC GFP WB 3 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182203       4692211000.0 23461055.0 DRR189360 0:100 1:100 A:1310884816;C:1036187295;G:997846600;T:1347212024;N:80265 100 100     1310884816 1036187295 997846600 1347212024 80265 DRX179825 DRS200424 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89626 0.89739 0.18174 0.18338 0.72443 0.72588 0.4577 0.46684 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
145 145 DRR189359 DRX179824 DRS200423 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 2 SAMD00182202   sample name:HuC GFP WB 2|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182202 DRX179824 HuC GFP WB 2 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182202       7514071000.0 37570355.0 DRR189359 0:100 1:100 A:2098251885;C:1661407212;G:1597423444;T:2156861774;N:126685 100 100     2098251885 1661407212 1597423444 2156861774 126685 DRX179824 DRS200423 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.89548 0.89691 0.26231 0.26473 0.70358 0.70471 0.4732 0.4753 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
146 146 DRR189358 DRX179823 DRS200422 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.       GFP cells form whole brain of HuC:GFP adult zebrafish 1 SAMD00182201   sample name:HuC GFP WB 1|genotype:HuC:GFP|tissue:brain                 Illumina HiSeq 2500 paired end sequencing of SAMD00182201 DRX179823 HuC GFP WB 1 1 The cDNA was amplified using SMARTer v4. Sequence libraries were produced from cDNA using Nextera XT DNA library kit Illumina.   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00182201       5175824800.0 25879124.0 DRR189358 0:100 1:100 A:1424688686;C:1174545239;G:1128653980;T:1447848363;N:88532 100 100     1424688686 1174545239 1128653980 1447848363 88532 DRX179823 DRS200422 DRA008852 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.91906 0.91958 0.20879 0.21088 0.74787 0.74876 0.45243 0.45221 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2021-08-08 Adult Adult Brain Nervous System
148 148 DRR051066 DRX045958 DRS057275 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 40 adult fish by using FACS GFP+ cells from telencephalon of hspGFF62A;UAS:GFP transgenic zebrafish SAMD00044995   sample name:h62A GFP plus Tel|tissue type:brain|genotype:hspGFF62A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044995 DRX045958 h62A GFP plus Tel 1 cDNA synthesis : clontech SMARTer v3 > Library prep : Illumina Nextera XT DNA Library Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044995       17421256000.0 87106280.0 DRR051066 0:100 1:100 A:4859368314;C:3846634012;G:3717526030;T:4993260256;N:4467388 100 100     4859368314 3846634012 3717526030 4993260256 4467388 DRX045958 DRS057275 DRA004276 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.88127 0.88114 0.22941 0.23155 0.72161 0.72437 0.49284 0.49449 100 100 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified nextera bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
149 149 DRR051065 DRX045957 DRS057272 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon from adult zebrafrish 30 min post light and electrical shock association in non trace Two Way Active Avoidance conditioning CS+US telencephalon 30 min post TWAA SAMD00044990   sample name:CS+US Tel 30|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044990 DRX045957 CS+US Tel 30 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044990       20239329200.0 101196646.0 DRR051065 0:100 1:100 A:5347169722;C:4777492672;G:4750401220;T:5361888239;N:2377347 100 100     5347169722 4777492672 4750401220 5361888239 2377347 DRX045957 DRS057272 DRA004275 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.93576 0.93353 0.13979 0.14019 0.70043 0.70203 0.48989 0.49214 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
150 150 DRR051064 DRX045956 DRS057265 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon from adult zebrafrish 30 min post light stimulation in Two Way Active Avoidance coditioning CS telencephalon 30 min post TWAA SAMD00044991   sample name:CS Tel 30|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044991 DRX045956 CS Tel 30 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044991       29268319600.0 146341598.0 DRR051064 0:100 1:100 A:7777792429;C:6878969107;G:6819275179;T:7788795270;N:3487615 100 100     7777792429 6878969107 6819275179 7788795270 3487615 DRX045956 DRS057265 DRA004274 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.93646 0.93664 0.14051 0.14191 0.70199 0.70374 0.49256 0.49684 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
152 152 DRR051062 DRX045954 DRS057271 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 40 adult fish by using FACS GFP+ cells from telencephalon of SAGFFLF120A;UAS:GFP transgenic zebrafish SAMD00044988   sample name:120A GFP plus Tel|tissue type:brain|genotype:SAGFFLF120A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044988 DRX045954 120A GFP plus Tel 1 cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044988       9916242014.0 49090307.0 DRR051062 0:101 1:101 A:2991626000;C:1935418605;G:1974202781;T:3011783158;N:3211470 101 101     2991626000 1935418605 1974202781 3011783158 3211470 DRX045954 DRS057271 DRA004272 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.87779 0.86382 0.2948 0.28993 0.72809 0.74075 0.50317 0.49169 101 101 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified smarter bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
153 153 DRR051061 DRX045953 DRS057274 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Collected from 10 adult fish by using FACS GFP+ cells from whole brain of SAGFFLF231A;UAS:GFP transgenic zebrafish SAMD00044989   sample name:231A GFP plus WB|tissue type:brain|genotype:SAGFFLF231A;UAS:GFP                 Illumina HiSeq 2500 paired end sequencing of SAMD00044989 DRX045953 231A GFP plus WB 1 cDNA synthesis : clontech SMARTer v2 > Library prep : Illumina TrunSeq DNA Sample Preparation Kits   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044989       27230654000.0 136153270.0 DRR051061 0:101 1:99 A:7929214734;C:5506861409;G:5563593280;T:8059057191;N:171927386 101 99     7929214734 5506861409 5563593280 8059057191 171927386 DRX045953 DRS057274 DRA004271 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.88462 0.88282 0.26215 0.26067 0.72468 0.73555 0.48369 0.48285 101 99 B B biological fallback assumption illumina hiseq_era full_length cdna_unspecified smarter bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
154 154 DRR051060 DRX045952 DRS057269 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Telencephalon of adult zebrafrish barin zebrafihsh telencephalon SAMD00044992   sample name:Tel|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044992 DRX045952 Tel 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044992       20006128076.0 99040238.0 DRR051060 0:101 1:101 A:5393556813;C:4623783008;G:4592812230;T:5384415659;N:11560366 101 101     5393556813 4623783008 4592812230 5384415659 11560366 DRX045952 DRS057269 DRA004270 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.94215 0.94001 0.16398 0.16585 0.69331 0.69479 0.4872 0.48516 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
155 155 DRR051059 DRX045951 DRS057270 DRP003977 PRJDB4470 Gene expression analysis of the zebrafish brain DRP003977 Other Gene expression profiling by RNA seq of specific regions and subpopulations of neurons in the zebrafish brain that control behaviors.     Whole brain of adult zebrafish zebrafish whole brain SAMD00044993   sample name:WB|tissue type:brain|genotype:WT                 Illumina HiSeq 2500 paired end sequencing of SAMD00044993 DRX045951 WB 1 Illumina Truseq RNA Library Prep Kit v2   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP003977 Illumina HiSeq 2500 paired end sequencing of SAMD00044993       25283347776.0 125165088.0 DRR051059 0:101 1:101 A:6845696813;C:5810492697;G:5775241119;T:6837142940;N:14774207 101 101     6845696813 5810492697 5775241119 6837142940 14774207 DRX045951 DRS057270 DRA004269 NIG|National Institute of Genetics (Japan) National Institute of Genetics (Japan) 2 0.94203 0.94067 0.15107 0.15158 0.68651 0.6882 0.49596 0.49589 101 101 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-01-06 Adult Adult Brain Nervous System
174 174 DRR084198 DRX078029 DRS086523 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo testosterone treatment zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq replicate2] SAMD00073605   sample name:TES1 4th|replicate:biological replicate 2                 Illumina HiSeq 2500 sequencing of SAMD00073605 DRX078029 zebrafish ovary isolated from adult fish in vivo testosterone treatment. [RNAseq replicate2] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073605       1382763132.0 38410087.0 DRR084198 0:36 A:314367195;C:333340483;G:353519828;T:378654329;N:2881297 36       314367195 333340483 353519828 378654329 2881297 DRX078029 DRS086523 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90366   0.02033   0.77104   0.46543   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
176 176 DRR084196 DRX078027 DRS086521 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo ethanol treatment zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq replicate2] SAMD00073603   sample name:Et 4th|replicate:biological replicate 2                 Illumina HiSeq 2500 sequencing of SAMD00073603 DRX078027 zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq replicate2] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073603       1456791660.0 40466435.0 DRR084196 0:36 A:336533534;C:355126203;G:368021063;T:394179246;N:2931614 36       336533534 355126203 368021063 394179246 2931614 DRX078027 DRS086521 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.89408   0.02082   0.77027   0.45866   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
177 177 DRR084195 DRX078026 DRS086520 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     natural paring late sample zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq replicate2] SAMD00073602   sample name:O 4th|replicate:biological replicate 2                 Illumina HiSeq 2500 sequencing of SAMD00073602 DRX078026 zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq replicate2] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073602       1627945092.0 45220697.0 DRR084195 0:36 A:381205209;C:392853175;G:410714269;T:439790560;N:3381879 36       381205209 392853175 410714269 439790560 3381879 DRX078026 DRS086520 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.89419   0.02159   0.76848   0.46407   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
178 178 DRR084194 DRX078025 DRS086519 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo maturation inducing hormone DHP treatment zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq replicate2] SAMD00073601   sample name:DHP 4th|replicate:biological replicate 2                 Illumina HiSeq 2500 sequencing of SAMD00073601 DRX078025 zebrafish ovary isolated from adult fish in vivo maturation inducing hormone DHP treatment. [RNAseq replicate2] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073601       969680196.0 26935561.0 DRR084194 0:36 A:223558856;C:233793515;G:244712298;T:265549055;N:2066472 36       223558856 233793515 244712298 265549055 2066472 DRX078025 DRS086519 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90178   0.02203   0.76579   0.46491   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
179 179 DRR084193 DRX078024 DRS086518 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo diethylstilbestrol DES treatment zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq replicate2] SAMD00073600   sample name:DES 4th|replicate:biological replicate 2                 Illumina HiSeq 2500 sequencing of SAMD00073600 DRX078024 zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq replicate2] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073600       825301296.0 22925036.0 DRR084193 0:36 A:189771874;C:198593952;G:209666041;T:225480165;N:1789264 36       189771874 198593952 209666041 225480165 1789264 DRX078024 DRS086518 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90036   0.0197   0.7721   0.45773   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
180 180 DRR084192 DRX078023 DRS086517 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     natural paring late sample zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq replicate1] SAMD00073599   sample name:O|replicate:biological replicate 1                 Illumina HiSeq 2500 sequencing of SAMD00073599 DRX078023 zebrafish ovary isolated from adult fish natural paring ovulation. [RNAseq replicate1] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073599       1474870356.0 40968621.0 DRR084192 0:36 A:334130826;C:361572335;G:369758908;T:409173431;N:234856 36       334130826 361572335 369758908 409173431 234856 DRX078023 DRS086517 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91516   0.02086   0.76792   0.47914   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
182 182 DRR084190 DRX078021 DRS086515 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo maturation inducing hormone DHP treatment zebrafish ovary isolated from adult fish in vivo maturation inducing horm1 DHP treatment. [RNAseq replicate1] SAMD00073597   sample name:DHP|replicate:biological replicate 1                 Illumina HiSeq 2500 sequencing of SAMD00073597 DRX078021 zebrafish ovary isolated from adult fish in vivo maturation inducing hormone DHP treatment. [RNAseq replicate1] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073597       1527194556.0 42422071.0 DRR084190 0:36 A:352068936;C:371030475;G:383086948;T:420761508;N:246689 36       352068936 371030475 383086948 420761508 246689 DRX078021 DRS086515 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91815   0.02248   0.76209   0.46867   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
183 183 DRR084189 DRX078020 DRS086514 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo testosterone treatment zebrafish ovary isolated from adult fish in vivo testoster1 treatment. [RNAseq replicate1] SAMD00073596   sample name:TES|replicate:biological replicate 1                 Illumina HiSeq 2500 sequencing of SAMD00073596 DRX078020 zebrafish ovary isolated from adult fish in vivo testosterone treatment. [RNAseq replicate1] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073596       1403618796.0 38989411.0 DRR084189 0:36 A:321063874;C:342718133;G:352434647;T:387171455;N:230687 36       321063874 342718133 352434647 387171455 230687 DRX078020 DRS086514 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91583   0.02212   0.76073   0.47596   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
184 184 DRR084188 DRX078019 DRS086513 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo diethylstilbestrol DES treatment zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq replicate1] SAMD00073595   sample name:DES|replicate:biological replicate 1                 Illumina HiSeq 2500 sequencing of SAMD00073595 DRX078019 zebrafish ovary isolated from adult fish in vivo diethylstilbestrol DES treatment. [RNAseq replicate1] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073595       1532053512.0 42557042.0 DRR084188 0:36 A:342701220;C:372650449;G:392432461;T:424025702;N:243680 36       342701220 372650449 392432461 424025702 243680 DRX078019 DRS086513 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.91276   0.01965   0.77358   0.46461   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
185 185 DRR084187 DRX078018 DRS086512 DRP004758 PRJDB5490 Fine selection of up regulated genes duirng ovulation by in vivo induction of oocyte maturation and ovulation in zebrafish DRP004758 Other Two essential processes oocyte maturation and ovulation before oocytes become fertilizable that are independently induced but co operatively proceeded at the final step in oogenesis. Eventhough these two processes are induced by same maturation inducing steroid 17 20 beta dihydroxy 4 pregnen 3 one 17 20 beta DHP in teleost the receptor for each pathway is suggested to be different and thus signal transduction pathways are different. While much progresses achieved on the molecular mechanisms for induction of oocyte maturation the mechanisms to induce ovulation is under elucidation. Previously we established the procedure that can make it possible to prepare the ovarian tissue which contains oocyte maturation induced oocytes in vivo. In the same way ovulation can be induced in alive zebrafish. Thus it became possible to select the genes up regulated according to ovulation by compare the gene expression between maturation inducing genes in matured oocytes and both maturation and ovulation inducing genes in ovulated eggs. In vivo bioassay has been applied to prepare maturated and ovulated ovarian samples. Specifically up regulated genes to induce ovulation will be selected by RNA seq analysis. The mRNA abundance of highly up regulated genes will be confirmed by q PCR analysis. By this project ovulation inducing genes will be selected and its roles in induction of ovulation will be addressed in the future.     in vivo ethanol treatment zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq replicate1] SAMD00073594   sample name:EtOH|replicate:biological replicate 1                 Illumina HiSeq 2500 sequencing of SAMD00073594 DRX078018 zebrafish ovary isolated from adult fish in vivo ethanol treatment. [RNAseq replicate1] 1 Agilent SureSelect Strand Specific RNA Prep Kit   RNA-Seq TRANSCRIPTOMIC PolyA SINGLE ILLUMINA Illumina HiSeq 2500 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004758 Illumina HiSeq 2500 sequencing of SAMD00073594       1152032724.0 32000909.0 DRR084187 0:36 A:265166034;C:279617628;G:285136940;T:321928656;N:183466 36       265166034 279617628 285136940 321928656 183466 DRX078018 DRS086512 DRA005484 SHIZUOKA|Shizuoka University Shizuoka University 1 0.90791   0.02405   0.75972   0.48931   36   B   usable mapping rate illumina hiseq_era unknown poly_a unknown bulk unknown unknown   Japan 2019-01-23 Adult Adult Gonad Reproductive System
186 186 DRR162555 DRX153174 DRS083235 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate5 SAMD00152503   sample name:m39 5|age:39 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152503 DRX153174 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152503       1721110400.0 8605552.0 DRR162555 0:100 1:100 A:449613689;C:409864831;G:412050483;T:447085797;N:2495600 100 100     449613689 409864831 412050483 447085797 2495600 DRX153174 DRS083235 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96635 0.94149 0.03182 0.03006 0.81631 0.82449 0.53424 0.53879 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
187 187 DRR162554 DRX153173 DRS083234 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate4 SAMD00152502   sample name:m39 4|age:39 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152502 DRX153173 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152502       771888600.0 3859443.0 DRR162554 0:100 1:100 A:209886275;C:175458903;G:177995758;T:207451261;N:1096403 100 100     209886275 175458903 177995758 207451261 1096403 DRX153173 DRS083234 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95789 0.92781 0.03714 0.03527 0.80075 0.80917 0.5336 0.53957 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
188 188 DRR162553 DRX153172 DRS083233 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate3 SAMD00152501   sample name:m39 3|age:39 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152501 DRX153172 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152501       1750331200.0 8751656.0 DRR162553 0:100 1:100 A:470950871;C:402540953;G:405453019;T:468920181;N:2466176 100 100     470950871 402540953 405453019 468920181 2466176 DRX153172 DRS083233 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96458 0.93283 0.03644 0.03456 0.82169 0.82858 0.5481 0.54735 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
189 189 DRR162552 DRX153171 DRS083232 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate2 SAMD00152500   sample name:m39 2|age:39 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152500 DRX153171 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152500       1067838800.0 5339194.0 DRR162552 0:100 1:100 A:298532843;C:233982076;G:237439824;T:296396354;N:1487703 100 100     298532843 233982076 237439824 296396354 1487703 DRX153171 DRS083232 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95828 0.92985 0.04771 0.04523 0.79488 0.80294 0.49034 0.56243 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
190 190 DRR162551 DRX153170 DRS083231 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 39 mpf zebrafish replicate1 SAMD00152499   sample name:m39 1|age:39 month|biological replicate:1|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152499 DRX153170 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152499       1067002000.0 5335010.0 DRR162551 0:100 1:100 A:278427675;C:254036661;G:255175092;T:277557906;N:1804666 100 100     278427675 254036661 255175092 277557906 1804666 DRX153170 DRS083231 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.95438 0.92802 0.05748 0.05502 0.79192 0.79819 0.52464 0.52682 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
191 191 DRR162550 DRX153169 DRS083230 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate5 SAMD00152498   sample name:m16 5|age:16 month|biological replicate:5|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152498 DRX153169 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152498       930106600.0 4650533.0 DRR162550 0:100 1:100 A:242979975;C:221639069;G:223234689;T:240720049;N:1532818 100 100     242979975 221639069 223234689 240720049 1532818 DRX153169 DRS083230 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96995 0.94193 0.02755 0.02642 0.84816 0.85549 0.57425 0.52005 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
192 192 DRR162549 DRX153168 DRS083229 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate4 SAMD00152497   sample name:m16 4|age:16 month|biological replicate:4|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152497 DRX153168 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152497       785247000.0 3926235.0 DRR162549 0:100 1:100 A:201565472;C:190838604;G:191695270;T:199849282;N:1298372 100 100     201565472 190838604 191695270 199849282 1298372 DRX153168 DRS083229 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.96925 0.95032 0.02522 0.02431 0.83528 0.84135 0.45946 0.52823 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
193 193 DRR162548 DRX153167 DRS083228 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate3 SAMD00152496   sample name:m16 3|age:16 month|biological replicate:3|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152496 DRX153167 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152496       712659400.0 3563297.0 DRR162548 0:100 1:100 A:184163345;C:171746662;G:173153688;T:182436940;N:1158765 100 100     184163345 171746662 173153688 182436940 1158765 DRX153167 DRS083228 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.97092 0.94516 0.02464 0.02354 0.82925 0.83721 0.55084 0.55847 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System
194 194 DRR162547 DRX153166 DRS083227 DRP004696 PRJDB7713 Age associated transcriptome analysis in 5 tissues of zebrafish DRP004696 Transcriptome Analysis We performed transcriptome analysis for brain gill heart liver and muscle from 2 month 7 month 16 month and 39 mpf zebrafish. We analyzed age associated gene expression pattern in zebrafish and compared with similar public transcriptome data of rat Yu et al. 2014.       muscle sample from 16 mpf zebrafish replicate2 SAMD00152495   sample name:m16 2|age:16 month|biological replicate:2|tissue:muscle                 Illumina HiSeq 2000 paired end sequencing of SAMD00152495 DRX153166 1 1 Illumina TruSeq Stranded mRNA HT Kit   RNA-Seq TRANSCRIPTOMIC cDNA PAIRED ILLUMINA Illumina HiSeq 2000 <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>200</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>101</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> DRP004696 Illumina HiSeq 2000 paired end sequencing of SAMD00152495       795706600.0 3978533.0 DRR162547 0:100 1:100 A:205087113;C:192675977;G:193703665;T:203054171;N:1185674 100 100     205087113 192675977 193703665 203054171 1185674 DRX153166 DRS083227 DRA007711 UT-AQUA|Laboratory of Aquatic Molecular Biology and Biotechnology Department of Aquatic Bioscience, Graduate School of Agriculture and Life Sciences, The University of Tokyo 2 0.9693 0.94476 0.03018 0.02924 0.81615 0.82564 0.52874 0.52813 100 100 B B biological fallback assumption illumina hiseq_era unknown cdna_unspecified trueseq bulk unknown unknown   Japan 2018-12-24 Adult Adult Muscle Muscular System

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CREATE TABLE run_metadata("run.accession" VARCHAR, "experiment.accession" VARCHAR, "sample.accession" VARCHAR, "study.accession" VARCHAR, bioproject VARCHAR, "study.title" VARCHAR, "study.alias" VARCHAR, "study.type" VARCHAR, "study.abstract" VARCHAR, "study.attributes" VARCHAR, "study.PMIDs" VARCHAR, "sample.description" VARCHAR, "sample.title" VARCHAR, "sample.alias" VARCHAR, "sample.centername" VARCHAR, "sample.attributes" VARCHAR, "GEOsample.title" VARCHAR, "GEOsample.dataprocessing" VARCHAR, "GEOsample.source" VARCHAR, "GEOsample.treatmentprotocol" VARCHAR, "GEOsample.extractprotocol" VARCHAR, "GEOsample.growthprotocol" VARCHAR, "GEOsample.characteristics" VARCHAR, "GEOsample.accession" VARCHAR, "experiment.title" VARCHAR, "experiment.alias" VARCHAR, "experiment.library_name" VARCHAR, "experiment.design_description" VARCHAR, "experiment.library_construction_protocol" VARCHAR, "experiment.attributes" VARCHAR, "experiment.library_strategy" VARCHAR, "experiment.library_source" VARCHAR, "experiment.library_selection" VARCHAR, "experiment.library_layout" VARCHAR, "experiment.platform" VARCHAR, "experiment.instrument_model" VARCHAR, "experiment.spot_descriptor" VARCHAR, "experiment.study_ref" VARCHAR, "run.title" VARCHAR, "run.attributes" VARCHAR, "run.filename" VARCHAR, "run.semantic_name" VARCHAR, "run.total_bases" DOUBLE, "run.total_spots" DOUBLE, "run.alias" VARCHAR, "run.read_lengths" VARCHAR, "run.base_counts" VARCHAR, "run.r1_length" BIGINT, "run.r2_length" BIGINT, "run.r3_length" BIGINT, "run.r4_length" BIGINT, "run.Acount" BIGINT, "run.Ccount" BIGINT, "run.Gcount" BIGINT, "run.Tcount" BIGINT, "run.Ncount" BIGINT, "run.experiment" VARCHAR, "run.pool_member" VARCHAR, "submission.accession" VARCHAR, "submission.srasource" VARCHAR, "submission.bioprojectsource" VARCHAR, "seqdetective.n_mates" BIGINT, "seqdetective.mapping_rate.mate1" DOUBLE, "seqdetective.mapping_rate.mate2" DOUBLE, "seqdetective.nofeature_rate.mate1" DOUBLE, "seqdetective.nofeature_rate.mate2" DOUBLE, "seqdetective.sparsity.mate1" DOUBLE, "seqdetective.sparsity.mate2" DOUBLE, "seqdetective.pos_strand_rate.mate1" DOUBLE, "seqdetective.pos_strand_rate.mate2" DOUBLE, "seqdetective.readlen.mate1" BIGINT, "seqdetective.readlen.mate2" BIGINT, "seqdetective.judgement.mate1" VARCHAR, "seqdetective.judgement.mate2" VARCHAR, "seqdetective.judgement.reason" VARCHAR, platform_family VARCHAR, instrument_generation VARCHAR, read_bias VARCHAR, selection_class VARCHAR, prep_kit VARCHAR, sc_or_bulk VARCHAR, tech_class VARCHAR, technology VARCHAR, tech_variant VARCHAR, "submission.bioprojectsource.country" VARCHAR, earliest_date DATE, devstage_curation VARCHAR, devstage_curation_coarse VARCHAR, tissue_curation VARCHAR, tissue_curation_coarse VARCHAR);;
CREATE INDEX idx_run_bioproject ON run_metadata(bioproject);;
CREATE INDEX idx_run_run_accession ON run_metadata("run.accession");;