{"database": "metadata", "table": "run_metadata", "rows": [[74398, "SRR23691712", "SRX19554098", "SRS16938844", "SRP425398", "PRJNA940501", "Zebrahub: Multimodal Zebrafish Developmental Atlas", "PRJNA940501", "Other", "A single embryo single cell RNA seq developmental atlas of Zebrafish.", null, null, null, "TDR45", "TDR45 30somite EKW NA none 10x", null, "strain:EKW|isolate:single embryo|breed:siblings per timepoint|cultivar:not applicable|ecotype:not applicable|age:24 hpf|sex:not determined|tissue:Whole embryo|replicate:rep3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "TDR45", "TDR45 30somite EKW NA none 10x", "TDR45 30somite EKW NA none 10x", "single embryo dissociation", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP425398", null, null, "TDR45_30somite_EKW_NA_none_10x_S11_L001_I1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L001_I2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L001_R1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L001_R2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L002_I1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L002_I2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L002_R1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L002_R2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L003_I1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L003_I2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L003_R1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L003_R2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L004_I1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L004_I2_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L004_R1_001.fastq.gz TDR45_30somite_EKW_NA_none_10x_S11_L004_R2_001.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq", 151741402440.0, 1099575380.0, "TDR45 30somite EKW NA none 10x S11 L001 I1 001.fastq.gz", "0:10 1:10 2:28 3:90", "A:28305264381;C:22203945096;G:24554199279;T:23898269926;N:105518", 10, 10, 28, 90, 28305264381, 22203945096, 24554199279, 23898269926, 105518, "SRX19554098", "SRS16938844", "SRA1598656", "Chan Zuckerberg Biohub|Quantitative Cell Science", "Chan Zuckerberg Biohub", 1, 0.92131, null, 0.13041, null, 0.78409, null, 0.52692, null, 90, null, "B", null, "usable mapping rate", "illumina", "novaseq_era", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_generic", "generic-scrnaseq-only", null, "United States", "2023-03-03", "Pharyngula", "Embryo", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["74398"], "units": {}, "query_ms": 9.127206998527981}