{"database": "metadata", "table": "run_metadata", "rows": [[69684, "SRR19135484", "SRX15203073", "SRS12941937", "SRP374105", "PRJNA836108", "Single cell sequencing data of zebrafish spinal cord injury", "GSE202429", "Transcriptome Analysis", "post spinal cord injury in adult zebrafish  the spinal cord was taken out for single cell data sequencing Overall design: The spinal cord of adult zebrafish was taken for single cell sequencing", null, null, null, "sci 7 days", "GSM6122392", null, "tissue:Wild type zebrafish|age:4 month|geo loc name:missing|collection date:missing", "sci 7 days", "The Cell Ranger software was obtained from 10x Genomics website   https://support.10xgenomics.com/single cell gene expression/software/downloads/latest Alignment  filtering    barcode counting  and UMI counting were performed with cellranger count module to generate feature barcode   matrix and determine clusters. Dimensionality reduction was performed using PCA and the first ten principle   compoments were used to generate clusters by K means algorithm and graph based algorithm  respectively. Assembly: GRCz11 Supplementary files format and content: Matrix table with raw gene count  for every gene and every sample", "Wild type zebrafish", null, "single cells were suspended in PBS containing 0.04% BSA According to the manufacture\u2019s introduction  Single cell RNA seq libraries were   constructed using Single Cell 3\u2019 Library andGel Bead Kit V3. The libraries were finally sequenced using an Illumina   Novaseq6000 sequencer with a sequencing depth of at least 100 000 reads per cell with pair end 150 bp PE150 reading   strategy", null, "age:4 month", "GSM6122392", "GSM6122392: sci 7 days; Danio rerio; RNA Seq", "GSM6122392 r1", "GSM6122392", "1", "single cells were suspended in PBS containing 0.04% BSA According to the manufacture's introduction  Single cell RNA seq libraries were   constructed using Single Cell three prime Library andGel Bead Kit V3. 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