{"database": "metadata", "table": "run_metadata", "rows": [[69540, "SRR18885356", "SRX14963965", "SRS12714100", "SRP371679", "PRJNA830699", "Gene expression profile showing novel insight for fasting\u2013refeeding response in zebrafish muscle.", "GSE201273", "Transcriptome Analysis", "Gene expression profile was investigated using zebrafish muscle unger  fasting refeeding conditions. This study revealed fasting refeeding responsive genes in zebrafish muscle. Overall design: Zebrafish muscle under the fasting for 24 hours or refeeding post 3 or 8 hours conditions were analysed using mRNA sequencing.", null, "pubmed:35684038", null, "Refed 8h rep 4 [RUN 048 12]", "GSM6057163", null, "source name:Zebrafish muscle between anus and caudal tail fin|strain:Not applicable|tissue:Muscle|age:2 month 3 month|genotype:Wild type|treatment:refeeding post 8 hours", "Refed 8h rep 4 [RUN 048 12]", "RNA seq reads were aligned to the GRCz11 genome assembly using CLC genomics workbench 20.0.4 with the default settings. A statistical differential expression test was used \"Differential Expression for RNA Seq tool\" in the CLC software. Assembly: GRCz11 genome assembly Supplementary files format and content: Excel file of statistic test and expression data.", "Zebrafish muscle between anus and caudal tail fin", "The following 3 experimental conditions were set for zebrafish: 24 hour fasting group Fast  3 hour refeeding group Refed 3h  and 8 hour refeeding group Refed 8h.", "RNA were extracted from the muscle between the anus and caudal tail fin  using RNAiso Blood Cat#9112; Takara Bio Library was constructed using NEBNext Ultra II RNA Library Prep Kit for Illumina  and NEBNext PolyA mRNA Magnetic Isolation Module Cat# E7770 and E7490; New England Biolabs.", "Standard protocol.", "strain:Not applicable|tissue:Muscle|age:2 month 3 month|genotype:Wild type|treatment:refeeding post 8 hours", "GSM6057163", "GSM6057163: Refed 8h rep 4 [RUN 048 12]; Danio rerio; RNA Seq", "GSM6057163 r1", "GSM6057163", "1", "RNA were extracted from the muscle between the anus and caudal tail fin  using RNAiso Blood Cat#9112; Takara Bio Library was constructed using NEBNext Ultra II RNA Library Prep Kit for Illumina  and NEBNext PolyA mRNA Magnetic Isolation Module Cat# E7770 and E7490; New England Biolabs.", null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP371679", null, null, "RUN-048-12_R1.fastq RUN-048-12_R2.fastq", "fastq fastq", 1769202432.0, 24572256.0, "GSM6057163 r1", "0:36 1:36", "A:476394817;C:400880078;G:407298919;T:483990730;N:637888", 36, 36, null, null, 476394817, 400880078, 407298919, 483990730, 637888, "SRX14963965", "SRS12714100", "SRA1408267", "University of tsukuba", "University of tsukuba", 2, 0.92406, 0.92423, 0.08015, 0.08247, 0.7513, 0.75412, 0.52264, 0.53361, 36, 36, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "cdna_unspecified", "nebnext", "bulk", "unknown", "unknown", null, "Japan", "2022-04-22", "Multi-stage", "Multi-stage", "Muscle", "Muscular System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["69540"], "units": {}, "query_ms": 7.754325997666456}