{"database": "metadata", "table": "run_metadata", "rows": [[69479, "SRR18731940", "SRX14832179", "SRS12587950", "SRP369810", "PRJNA825753", "Zebrafish ovarian transcriptome sequencing", "PRJNA825753", "Other", "1 The transcriptome sequencing of nine samples was completed  and a total of 63.66 Gb Clean Data was obtained  and the Clean Data of each sample reached 6.14 Gb and above  and the percentage of Q30 bases was 91.64 % and above.2 The Clean Reads of each sample were compared with the designated reference genome for sequence alignment  and the alignment efficiency was 92.04% or more.3 Functional annotation was performed for all genes  including comparison with NR [1]  Swiss Prot [2]  KEGG [3]  COG [4]  KOG [5]  GO [6] and Pfam databases  and annotation results for a total of 26929 genes were obtained.4 Based on the comparison results  the libraries were evaluated.5 Based on the comparison results  gene expression analysis was performed. Based on the expression of genes in different samples  differentially expressed genes were identified  and functional annotation and enrichment analysis were performed.", null, null, null, null, "Zebrafish Ovaries", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:6 Months|dev stage:adult fish|sex:female|tissue:Ovaries|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Adult zebrafish ovary", "20220412 9", "20220412 9", "materials and methods", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP369810", null, null, "GPR19-11-Rescue-3_BKDL202619368-1a-N711-AK415_1.fq.gz GPR19-11-Rescue-3_BKDL202619368-1a-N711-AK415_2.fq.gz", "fastq fastq", 7830567600.0, 26101892.0, "GPR19 11 Rescue 3 BKDL202619368 1a N711 AK415 1.fq.gz", "0:150 1:150", "A:2091186346;C:1821842935;G:1856665826;T:2060841839;N:30654", 150, 150, null, null, 2091186346, 1821842935, 1856665826, 2060841839, 30654, "SRX14832179", "SRS12587950", "SRA1402797", "zhejiang ocean university|school of fishery", "zhejiang ocean university", 2, 0.94642, 0.94446, 0.03159, 0.031, 0.73977, 0.74101, 0.49671, 0.49184, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-04-12", "Adult", "Adult", "Gonad", "Reproductive System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["69479"], "units": {}, "query_ms": 12.08084799873177}