{"database": "metadata", "table": "run_metadata", "rows": [[69406, "SRR18516949", "SRX14648013", "SRS12413416", "SRP366502", "PRJNA821148", "CAGE seq total and nuclear RNA and nanT iCAGE acrosss 6 developmental stages", "PRJNA821148", "Other", "In order to compare mRNA expression in the whole cell and the nucleus during development  we prepared CAGE seq libraries from total RNA as well as only from nuclear RNA as well as nanti CAGE on 6 developmental stages", null, null, null, null, "DCD007417BS", null, "strain:AB|age:2.75hpf|dev stage:512 cell|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "nanT iCAGE 512 cell", "DCD003640SQ", "DCD003640SQ", "nanT iCAGE with Total RNA  max read depth: 48", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina HiSeq 2000", null, "SRP366502", null, null, "CAGE-seq_Mueller_lab_0008AS.DCD003640SQ.USERirene.stevens.R1.fastq.gz", "fastq", 389471904.0, 8113998.0, "CAGE seq Mueller lab 0008AS.DCD003640SQ.USERirene.stevens.R1.fastq.gz", "0:48 1:0", "A:106010507;C:93511522;G:101307749;T:88105339;N:536787", 48, 0, null, null, 106010507, 93511522, 101307749, 88105339, 536787, "SRX14648013", "SRS12413416", "SRA1393751", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.88886, null, 0.17661, null, 0.80624, null, 0.71804, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "other", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["69406"], "units": {}, "query_ms": 7.77978400583379}