{"database": "metadata", "table": "run_metadata", "rows": [[69393, "SRR18516717", "SRX14647786", "SRS12413212", "SRP366491", "PRJNA821088", "Enhancer calling in early stages", "PRJNA821088", "Other", "CAGE seq for enhancer calling in early stages for the DANIO CODE project.", null, null, null, null, "DCD007473BS", null, "strain:WT|age:24hpf|dev stage:Prim 5|sex:not applicable|tissue:early embryonic cell|biomaterial provider:Mueller lab  University of Birmingham|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "CAGE seq Prim Whole cell CAGE", "DCD003717SQ", "DCD003717SQ", "max read length:50", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "CAGE", "SINGLE", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP366491", null, null, "CAGE-seq_Mueller_lab_0013AS.DCD003717SQ.USERdanio-user.R1.fastq.gz", "fastq", 1485845376.0, 30955112.0, "CAGE seq Mueller lab 0013AS.DCD003717SQ.USERdanio user.R1.fastq.gz", "0:48 1:0", "A:329122121;C:402514173;G:390388645;T:363745867;N:74570", 48, 0, null, null, 329122121, 402514173, 390388645, 363745867, 74570, "SRX14647786", "SRS12413212", "SRA1393740", "DANIO-CODE|Department for Biosciences and Nutrition", "DANIO-CODE DANIO-CODE", 1, 0.23893, null, 0.0248, null, 0.86125, null, 0.50849, null, 48, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2022-03-29", "Pharyngula", "Embryo", "Embryo Imprecise", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["69393"], "units": {}, "query_ms": 11.424575001001358}