{"database": "metadata", "table": "run_metadata", "rows": [[61761, "SRR13015619", "SRX9466617", "SRS7678765", "SRP291905", "PRJNA674002", "A to I RNA editing in zebrafish during development", "PRJNA674002", "Other", "Here  we investigated A to I RNA editing in early zebrafish development and in the adult brain. Raw  unmapped sequencing output from stranded mRNA libraries can be found under this accession.", null, null, null, "zebrafish embryos 2 hpf", "single cross 1 2hpf.rep1", null, "strain:AB wildtype|dev stage:2 hpf|sex:unknown|tissue:whole embryo|embryos derived by cross:single cross 1|biological replicate:replicate 1|assay type:mRNA seq|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mRNA seq of whole zebrafish embryos  wildtype AB  2 hpf  single cross 1  Rep1  lane1", "PJ KH 005 1", "PJ KH 005 1", "stranded mRNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", null, "SRP291905", null, null, "PJ_KH_005_S5_L001_R1_001.fastq.gz PJ_KH_005_S5_L001_R2_001.fastq.gz", "fastq fastq", 6551635112.0, 21694156.0, "PJ KH 005 S5 L001 R1 001.fastq.gz", "0:151 1:151", "A:1755416200;C:1525377650;G:1586890281;T:1682293615;N:1657366", 151, 151, null, null, 1755416200, 1525377650, 1586890281, 1682293615, 1657366, "SRX9466617", "SRS7678765", "SRA1153075", "MDC Berlin|BIMSB", "MDC Berlin", 2, 0.90091, 0.89737, 0.02631, 0.02535, 0.78184, 0.78362, 0.48813, 0.48626, 151, 151, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Germany", "2020-11-10", "Cleavage", "Embryo", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["61761"], "units": {}, "query_ms": 5.365585999243194}