{"database": "metadata", "table": "run_metadata", "rows": [[59017, "SRR11577262", "SRX8145101", "SRS6507837", "SRP257630", "PRJNA627056", "Impact of social isolation on brain transcriptome in zebrafish", "PRJNA627056", "Other", "The goal of the study was to identify genes or genetic modules that are associated with the presence/absence of conspecifics.", null, null, null, "21 va 2", "20170912 21dpf va", null, "breed:Konstanz Wildtype|age:21 dpf|dev stage:juvenile|sex:not applicable|tissue:brain|biomaterial provider:Erin Schuman|collected by:Lukas Anneser|collection date:2017 09 12|sample type:whole brain|store cond:storage in trizol  immediate extraction|treatment:visual access|replicate:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio: larval and juvenile brain", "D709 D508", "D709 D508", "RNA extraction from whole brain lysates  polyA enrichment  reverse transcription  and amplification", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RT-PCR", "SINGLE", "ILLUMINA", "NextSeq 500", null, "SRP257630", null, null, "20170912_21dpf_va_S14_R1_001.fastq.gz", "fastq", 1672012701.0, 12141814.0, "20170912 21dpf va S14 R1 001.fastq.gz", "0:137.71 1:0", "A:476642379;C:357414674;G:356006342;T:480630478;N:1318828", 137, 0, null, null, 476642379, 357414674, 356006342, 480630478, 1318828, "SRX8145101", "SRS6507837", "SRA1067479", "Max Planck Institute for Brain Research|Synaptic Plasticity", "Max Planck Institute for Brain Research", 1, 0.94024, null, 0.16163, null, 0.69779, null, 0.49063, null, 150, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Germany", "2020-04-21", "Multi-stage", "Multi-stage", "Brain", "Nervous System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["59017"], "units": {}, "query_ms": 7.585861996631138}