{"database": "metadata", "table": "run_metadata", "rows": [[55312, "SRR11092483", "SRX7731311", "SRS6151718", "SRP226922", "PRJNA577226", "Danio rerio breed:AB Transcriptome or Gene expression", "PRJNA577226", "Other", "EpiGreen project investigated the nutrigenomic and nutriepigenomic effects of plant protein based diets on fish using zebrafish as a model. This study was also extended to a commercially important species  Atlantic salmon. Ultimately this knowledge would be benefited for the industry to formulate sustainable diets based on terrestrial ingredients with properly addressing fish welfare concerns.", null, null, "fast muscle", null, "control  fishm3", null, "strain:AB|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:laboratory|age:6 month|dev stage:adult|sex:female|tissue:fast muscle|biomaterial provider:zebrafish lab  Nord University|birth location:zebrafish lab  Nord University|collected by:Anusha K.S.Dhanasiri Nord University|collection date:2017 09|health state:Healthy|treatment:control replicate3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNASeq of zebrafish: adult female fast muscle", "cm3", "cm3", "Directional RNA libraries with PolyA mRNA enrichment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "NextSeq 550", null, "SRP226922", null, null, "cm3.fastq.gz", "fastq", 2339617288.0, 30784438.0, "cm3.fastq.gz", "0:76 1:0", "A:622147797;C:548069187;G:533577104;T:635685680;N:137520", 76, 0, null, null, 622147797, 548069187, 533577104, 635685680, 137520, "SRX7731311", "SRS6151718", "SRA1043309", "Nord Universitet|Faculty of Biosciences and Aquaculture", "Nord Universitet", 1, 0.94319, null, 0.13419, null, 0.81438, null, 0.48694, null, 76, null, "B", null, "usable mapping rate", "illumina", "nextseq", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "Norway", "2020-02-15", "Adult", "Adult", "Muscle", "Muscular System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["55312"], "units": {}, "query_ms": 6.531845006975345}