{"database": "metadata", "table": "run_metadata", "rows": [[52966, "SRR9610837", "SRX6374046", "SRS5034855", "SRP212268", "PRJNA551601", "Respiratory supercomplexes provide metabolic efficiency in zebrafish", "GSE133487", "Transcriptome Analysis", "The role of OXPHOS respiratory supercomplexes remains still unknown. To answer this question we use as a model a SCAF1 null allele model in zebrafish. SCAF1 cox7a2l is the only supercomplex assembly factor identified in vertebrates and it is involved in the physical link of III IV complexes. Therefore the SCAF1 null allele model lack all III IV interactions. We demonstrate that supercomplexes provide an advantage in the optimization of metabolic resources. Overall design: Muscle from females SCAF1?1 post the 6 weeks of a regime of standard diet or double diet  were dissected and stored at  80\u00b0C.", null, "pubmed:32496654", null, "S0KO DD 7 RNA Seq", "GSM3910327", null, "source name:KO Double Diet Muscle|Sex:female|genotype/variation:KO|treatment:Double Diet|tissue:Muscle", "S0KO DD 7 RNA Seq", "Illumina HiSeq 2500 FASTQ files were checked for quality control metrics using FastQC version 0.11.8 Raw reads were pseudo mapped to the index created by Kallisto  using Danio rerio cDNA. Next  we used standard values for single end reads  with 100 bootstraps  fragment length 200bp and sd of fragments lengt was 30 bp. Genome build: Ensembl cDNA build 11  release 94 Supplementary files format and content: H5 and Tab delimited files containing the Ensembl transcript ID version Ensembl and the  length  eff length  est counts and tpm of  the \u201ccounts\u201d. To be imported using  tximport or sleuth.", "KO Double Diet Muscle", "Zebrafish were fed during 6 weeks in two different diets: standard diet S  gemma 300 3 times/day  double diet DD gemma 300 5 times/day", "Adult zebrafish skeletal muscle were dissected and stored at  80\u00b0C. RNA was isolated using Trizol and purified Zymo RNA Clean & Concentrator kit. RNA purity was evaluated using Agilent Fragment Analyzer and used for the bar coded library generation. Illumina HiSeq 2500 SystemLibrary was sequenced in Illumina HiSeq 2500 System", "Zebrafish were grown at same density 13 fish in 2 l tanks", "Sex:female|genotype/variation:KO|treatment:Double Diet|tissue:Muscle", "GSM3910327", "GSM3910327: S0KO DD 7 RNA Seq; Danio rerio; RNA Seq", "GSM3910327", null, "1", "Adult zebrafish skeletal muscle were dissected and stored at  80\u00b0C. RNA was isolated using Trizol and purified Zymo RNA Clean & Concentrator kit. RNA purity was evaluated using Agilent Fragment Analyzer and used for the bar coded library generation. 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