{"database": "metadata", "table": "run_metadata", "rows": [[49360, "SRR7892006", "SRX4729592", "SRS3812029", "SRP162371", "PRJNA492713", "Zebrafish macroH2A variants analysis reveals distinct embryo localization and function RNASeq Information", "PRJNA492713", "Other", "Most mouse and cell based studies have shown that macroH2A histone variants predominantly associate with heterochromatin and have been associated with gene repression  and with an important function in cell differentiation and inhibiting acquisition of pluripotency of pluripotency. However fewer studies have analysed the role of macroH2A during early embryo development. In the project  transgenic zebrafish lines were developed expressing macroH2A isoforms mH2A1 and mH2A2 fusion proteins GFP under endogenous identified promoters  to study their function during embryogenesis.", null, null, null, "mH2A1 75% epiboly whole embryo sample2 Lane4", "5.I1 ep wy 2 Lane4", null, "strain:TAB.L ABxTL|dev stage:75% epiboly|sex:pooled male and female|tissue:whole embryo|genotype:Tg mH2A1:GFP mH2A1|samples information:mH2A1 75% epiboly whole embryo sample2 Lane4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "mH2A1 75% epiboly whole embryo sample2 Lane4", "5.I1 ep wy 2 Lane4", "5.I1 ep wy 2 Lane4", "mH2A1 75% epiboly whole embryo sample2 Lane4", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "NextSeq 500", null, "SRP162371", null, null, "5.I1-ep-wy-2-Lane4-R1.fastq 5.I1-ep-wy-2-Lane4-R2.fastq", "fastq fastq", 341106146.0, 2260869.0, "5.I1 ep wy 2 Lane4 R2.fastq", "0:75.51 1:75.36", "A:85837100;C:83646068;G:84779770;T:86645340;N:197868", 75, 75, null, null, 85837100, 83646068, 84779770, 86645340, 197868, "SRX4729592", "SRS3812029", "SRA782245", "University of Nebraska Lincoln|Electrical and Computer Engineering", "University of Nebraska Lincoln", 2, 0.96757, 0.97029, 0.05363, 0.05278, 0.74848, 0.75136, 0.47365, 0.47505, 76, 35, "B", "B", "biological fallback assumption", "illumina", "nextseq", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2019-10-21", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["49360"], "units": {}, "query_ms": 11.611672001890838}