{"database": "metadata", "table": "run_metadata", "rows": [[48674, "SRR7789528", "SRX4644475", "SRS3742544", "SRP159670", "PRJNA475635", "Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis", "PRJNA475635", "Other", "The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis.", null, null, null, null, "DMSO 5hpf 3 S7", null, "strain:5D|isolate:24|dev stage:5 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "DMSO 5hpf 3 S7", "DMSO 5hpf 3 S7", "DMSO 5hpf 3 S7", "QuantSeq three prime mRNA Seq Library Prep Kit FWD", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "SINGLE", "ILLUMINA", "Illumina MiniSeq", null, "SRP159670", null, null, "DMSO-5hpf-3_S7_L001_R1_001.fastq.gz", "fastq", 218445719.0, 2899888.0, "DMSO 5hpf 3 S7 L001 R1 001.fastq.gz", "0:75.33 1:0", "A:64208224;C:42349017;G:55033374;T:56778155;N:76949", 75, 0, null, null, 64208224, 42349017, 55033374, 56778155, 76949, "SRX4644475", "SRS3742544", "SRA767209", "University of California, Riverside|Environmental Sciences", "University of California, Riverside", 1, 0.86641, null, 0.24238, null, 0.81379, null, 0.70979, null, 74, null, "B", null, "usable mapping rate", "illumina", "miseq", "3prime", "poly_a", "lexogen", "bulk", "unknown", "unknown", null, "United States", "2018-09-05", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["48674"], "units": {}, "query_ms": 9.704108000732958}