{"database": "metadata", "table": "run_metadata", "rows": [[48040, "SRR6921822", "SRX3869070", "SRS3112045", "SRP136856", "PRJNA448207", "Transcriptomic profiles of zebrafish liver exposed to phenanthrene", "PRJNA448207", "Other", "The present study aims to examine the toxicological effects of phenanthrene in the molecular mechanism in zebrafish. We performed RNA Seq analysis on zebrafish liver responding to phenanthrene exposure. Genes involved in phenanthrene exposure to zebrafish liver were identified from the transcriptional data. This study provides the completed evaluation of toxic effect of phenanthrene exposure to zebrafish by transcriptional approaches. Our findings could present foundation for further study on molecular mechanism responsible for zebrafish's responses to phenanthrene exposure.", null, null, "Fish in trplicate were anaesthetized with MS 222 at the dose of 10 mg/L  and livers were sampled and pooled", null, "PHE0d.2", null, "strain:not applicable|isolate:not applicable|breed:AB line|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:Adult fish|sex:pooled male and female|tissue:liver|biomaterial provider:China Zebrafish Resource Center|birth location:Wuhan  China|breeding method:maintained in the semi static system under conditions of water quality and illumination as follows: temperature 2327   pH 78  dissolved oxygen concentration 5 mg   L 1  total hardness 10250 mg CaCO3 per liter  and light/dark period of 12:12 h.|genotype:AB line|health state:Healthy|sample type:tissue sample|treatment:Fish maintained without xxx exposure|replicate:biological replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: adult male and female without xxx exposure", "PHE0d.2", "PHE0d.2", "Random PCR", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP136856", null, null, "PHE0d_2_2.fq.gz", "fastq", 3627859350.0, 24185729.0, "PHE0d 2 2.fq.gz", null, null, null, null, null, null, null, null, null, null, null, "SRX3869070", "SRS3112045", "SRA678027", "Pearl River Fisheries Research Institute, CAFS|Fisheries environmental protection laboratory", "Pearl River Fisheries Research Institute, CAFS", 1, 0.87829, null, 0.02367, null, 0.8213, null, 0.29999, null, 150, null, "B", null, "usable mapping rate", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2018-03-31", "Adult", "Adult", "Liver", "Liver and Biliary System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["48040"], "units": {}, "query_ms": 9.40884099691175}