{"database": "metadata", "table": "run_metadata", "rows": [[44977, "SRR6374793", "SRX3469644", "SRS2757038", "SRP126712", "PRJNA421571", "Danio rerio Raw sequence reads", "PRJNA421571", "Whole Genome Sequencing", "To compare the different expressed genes between knockout fish and wild type", null, null, null, null, "SL2 3.5hpf replicate2", null, "strain:AB5|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of danio rerio:embryo", "SL2 HIGHT2", "SL2 HIGHT2", "embryos quickly frozen in liquid nitrogen", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina HiSeq 4000", null, "SRP126712", null, null, "SL2_HIGHT2_1.fq.gz SL2_HIGHT2_2.fq.gz", "fastq fastq", 6676323300.0, 22254411.0, "SL2 HIGHT2 2.fq.gz", "0:150 1:150", "A:1767577251;C:1573479421;G:1588807215;T:1745946421;N:512992", 150, 150, null, null, 1767577251, 1573479421, 1588807215, 1745946421, 512992, "SRX3469644", "SRS2757038", "SRA638743", "Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering", "Institute of Hydrobiology, Chinese Academy of Sciences", 2, 0.90205, 0.90648, 0.02777, 0.0277, 0.75584, 0.75653, 0.51823, 0.51604, 150, 150, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2021-01-01", "Blastula", "Embryo", "Embryo Imprecise", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["44977"], "units": {}, "query_ms": 10.112737014424056}