{"database": "metadata", "table": "run_metadata", "rows": [[39858, "SRR2293664", "SRX1158742", "SRS1039790", "SRP062585", "PRJNA293269", "Danio rerio bigheart mutant transcriptome", "PRJNA293269", "Whole Genome Sequencing", "Zebrafish cardiac transcriptome of big heart mutant. The Bigheart mutant is generated by random mutagenesis in zebrafish ASWT strain by using gene breaking trap GBT PX vector", null, null, null, "Bigheart mutant cardiac transcriptome from Danio rerio", "Bigheart", null, "breed:ASWT|age:Adult|sex:pooled male and female|tissue:Heart|biomaterial provider:CSIR IGIB|disease:Cardiac hypertrophy|geo loc name:India|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "ZEBRAFISH Bigheart hetrozygous cardiac transcriptome", "Bigheart hetrozygous cardiac transcriptome", "Bigheart heterozygous", "Truseq RNA seq with robozero gold", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "ILLUMINA", "Illumina HiSeq 2500", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP062585", null, null, "ZF_24F_hetero_CCGTCC_R2_cat.fastq.gz ZF_24F_hetero_CCGTCC_R1_cat.fastq.gz", "fastq fastq", 17775105746.0, 87995573.0, "Transcriptome of zebrafish Bigheart heterozygous mutant cardiac transcriptome", "0:101 1:101", "A:4910552704;C:3934124661;G:3958965970;T:4968643725;N:2818686", 101, 101, null, null, 4910552704, 3934124661, 3958965970, 4968643725, 2818686, "SRX1158742", "SRS1039790", "SRA290009", "CSIR-IGIB", "CSIR- Institute of Genomics and Integrative Biology", 2, 0.89569, 0.89916, 0.30152, 0.30176, 0.73598, 0.73641, 0.4892, 0.49332, 101, 101, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "random_priming", "trueseq", "bulk", "unknown", "unknown", null, "India", "2016-08-19", "Adult", "Adult", "Heart", "Cardiovascular System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["39858"], "units": {}, "query_ms": 9.633756999392062}