{"database": "metadata", "table": "run_metadata", "rows": [[39686, "SRR2047225", "SRX1045363", "SRS950607", "SRP058956", "PRJNA285515", "Danio rerio shield stage transcriptome", "PRJNA285515", "Transcriptome Analysis", "Matched RNA seq to ribosome profiling", null, null, "Matched to ribosome profiling experiments in SAMN02087561", "Danio rerio Shield Stage Embryos RNA Seq", "Shield Stage Embryos", null, "strain:TLAB|dev stage:Shield|sex:not determined|tissue:whole embryos|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Shield Stage Embryos matched to Ribosome Profiling", "Shield Stage Embryos", "1", "Standard multiplexed paired end RNA Seq on the Broad Institute platform.", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>152</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>77</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP058956", null, null, "RPF-RNASeq_Shield_1_L.fastq.gz RPF-RNASeq_Shield_3_R.fastq.gz RPF-RNASeq_Shield_3_L.fastq.gz RPF-RNASeq_Shield_2_R.fastq.gz RPF-RNASeq_Shield_2_L.fastq.gz RPF-RNASeq_Shield_1_R.fastq.gz", "fastq fastq fastq fastq fastq fastq", 7345884728.0, 48328189.0, "Shield Stage Embryos", "0:76 1:76", "A:1932619942;C:1748899064;G:1767113490;T:1895258511;N:1993721", 76, 76, null, null, 1932619942, 1748899064, 1767113490, 1895258511, 1993721, "SRX1045363", "SRS950607", "SRA270772", "Harvard University|Schier", "Harvard University", 2, 0.94974, 0.95573, 0.08627, 0.08599, 0.76536, 0.76812, 0.4916, 0.4943, 76, 76, "B", "B", "biological fallback assumption", "illumina", "hiseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2015-06-03", "Gastrula", "Embryo", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["39686"], "units": {}, "query_ms": 6.286980002187192}