{"database": "metadata", "table": "run_metadata", "rows": [[39679, "SRR2040562", "SRX1038887", "SRS945623", "SRP058729", "PRJNA284830", "MicroRNA expression changes during zebrafish Danio\u00a0rerio development induced by hexabromocyclododecane", "PRJNA284830", "Whole Genome Sequencing", "Hexabromocyclododecane HBCD  one of the most widely used brominated flame retardants  has been found to cause toxic effects on animals. Although microRNAs miRNAs play an important role in many biological and metabolic processes  whether and how they are involved in the process of HBCD induced toxicity is largely unknown. In the present study  zebrafish embryos were exposed to HBCD at low concentrations of 0  2  20 and 200 nM. Subsequently  RNA was isolated from the embryo pool and the miRNAs expression profiles were analyzed using deep sequencing.", null, null, "Hexabromocyclododecane HBCD  one of the most widely used brominated flame retardants  has been found to cause toxic effects on animals. Although microRNAs miRNAs play an important role in many biological and metabolic processes  whether and how they are involved in the process of HBCD induced toxicity is largely unknown. In the present study  zebrafish embryos were exposed to HBCD at low concentrations of 0 2 20 200 nM. Subsequently  RNA was isolated from the embryo pool and the miRNAs expression profiles were analyzed using deep sequencing.", "zebrafish at normal developmental age of 72hpf in the control rep1", "control 1", null, "breed:zebrafish|strain:Wild type TU strain|age:72 hpf\u00a3\u00a8hpf stage:embryo|sex:pooled male and female|tissue:whole zebrafish|treatment:control 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "zebrafish at normal developmental age of 72hpf in the control  rep1", "Sample control 1", "1", "1", null, null, "miRNA-Seq", "TRANSCRIPTOMIC", "other", "SINGLE", "ILLUMINA", "Illumina Genome Analyzer II", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>33</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP058729", null, null, "Sample_control-1.fastq.tar.gz", "fastq", 398024253.0, 12061341.0, "Sample control 1", "0:33", "A:90133666;C:86672655;G:103932053;T:117192591;N:93288", 33, null, null, null, 90133666, 86672655, 103932053, 117192591, 93288, "SRX1038887", "SRS945623", "SRA269780", "MG", "Xiamen University", 1, 0.08082, null, 0.02367, null, 0.96106, null, 0.52033, null, 33, null, "B", null, "usable mapping rate", "illumina", "early_illumina", "unknown", "small_rna", "unknown", "bulk", "unknown", "unknown", null, "China", "2015-05-27", "Larval", "Larval", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["39679"], "units": {}, "query_ms": 11.866877001011744}