{"database": "metadata", "table": "run_metadata", "rows": [[37197, "SRR1010322", "SRX363361", "SRS490033", "SRP030770", "PRJNA222234", "Danio rerio Targeted Locus Loci", "PRJNA222234", "Transcriptome Analysis", "Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.", null, "pubmed:24531765", "stable transgenic line with wild type sf3a2 promoter construct driving expression of mCherry", "Generic sample from Danio rerio", "D. rerio WTL1F transgenic line", null, "strain:AB strain WTL1F line|dev stage:high 3.3 hpf", null, null, null, null, null, null, null, null, "D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene", "D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene", "1", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP030770", null, null, "WTL1F_transgene_R1.fastq WTL1F_transgene_R2.fastq", "fastq fastq", 95222070.0, 1380030.0, "D. rerio WTL1F transgenic line   single locus CAGE wild type sf3a2:mCherry transgene", "0:34 1:35", "A:17371572;C:23537350;G:29495884;T:24779827;N:37437", 34, 35, null, null, 17371572, 23537350, 29495884, 24779827, 37437, "SRX363361", "SRS490033", "SRA104816", "University of Bergen", "ZEPROME consortium", 2, 0.44573, 0.30978, 0.00036, 0.00019, 0.99943, 0.99991, 0.00023, 0.00124, 34, 35, "B", "B", "mate2-mate1 similar by mapping diff", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2014-02-10", "Blastula", "Embryo", "Undetermined", "Embryo Imprecise"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["37197"], "units": {}, "query_ms": 11.204310001630802}