{"database": "metadata", "table": "run_metadata", "rows": [[37188, "SRR1010331", "SRX363382", "SRS490048", "SRP030770", "PRJNA222234", "Danio rerio Targeted Locus Loci", "PRJNA222234", "Transcriptome Analysis", "Goal of this study is to functionally validate regulatory elements within sf3a2 gene promoter  which guide transcription start site selection for that promoter in the zebrafish oocyte.", null, "pubmed:24531765", "stable transgenic line with mutated sf3a2 promoter construct driving expression of mCherry", "Generic sample from Danio rerio", "D. rerio MUTL6F transgenic line", null, "strain:AB strain MUTL6F line|development stage:high 3.3 hpf", null, null, null, null, null, null, null, null, "D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2", "D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2", "1", "1", null, null, "OTHER", "TRANSCRIPTOMIC", "CAGE", "PAIRED", "ILLUMINA", "Illumina HiSeq 2000", "<SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>69</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>35</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR>", "SRP030770", null, null, "MUTL6F_endogenous_R1.fastq MUTL6F_endogenous_R2.fastq", "fastq fastq", 67887582.0, 983878.0, "D. rerio MUTL6F transgenic line   single locus CAGE endogeneous sf3a2", "0:34 1:35", "A:18224546;C:17687428;G:19119778;T:12829091;N:26739", 34, 35, null, null, 18224546, 17687428, 19119778, 12829091, 26739, "SRX363382", "SRS490048", "SRA104816", "University of Bergen", "ZEPROME consortium", 2, 0.57761, 0.02201, 0.0001, 0.00048, 0.99975, 0.99991, 0.00011, 0.02247, 34, 35, "B", "T", "mate2 technical by mapping diff", "illumina", "hiseq_era", "unknown", "cage", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2014-02-10", "Blastula", "Embryo", "Undetermined", "Embryo Imprecise"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["37188"], "units": {}, "query_ms": 12.019000001600944}