{"database": "metadata", "table": "run_metadata", "rows": [[36225, "SRR33596641", "SRX28826238", "SRS25059181", "SRP585802", "PRJNA1263632", "transcriptome analysis of cu693494.2 ORF3 mutant", "PRJNA1263632", "Other", "The 3 dpf cu693494.2 ORF3 /  and WT larvae were dark treated 1day  and the zebrafish samples were collected at CT4/100 hpf  each with duplicate samples.", null, null, null, null, "WT CT4 2", null, "strain:AB|age:3 dpf|dev stage:100 hpf|collection date:2024 10 28|geo loc name:China:Suzhu|sex:not determined|tissue:whole body|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio: whole body", "control2", "control2", "RNA", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP585802", null, null, "wt-ct4-2_L1_1.fq.gz wt-ct4-2_L1_2.fq.gz", "fastq fastq", 6965839200.0, 23219464.0, "wt ct4 2 L1 1.fq.gz", "0:150 1:150", "A:1904316669;C:1579337292;G:1621119016;T:1860980311;N:85912", 150, 150, null, null, 1904316669, 1579337292, 1621119016, 1860980311, 85912, "SRX28826238", "SRS25059181", "SRA2130944", "Soochow University|Center for Circadian Clocks", "Soochow University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "Unknown", "2025-05-16", "Larval", "Larval", "Trunk", "Surface Structure"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["36225"], "units": {}, "query_ms": 13.217004991020076}