{"database": "metadata", "table": "run_metadata", "rows": [[32718, "SRR29406602", "SRX24920053", "SRS21625715", "SRP513845", "PRJNA1123436", "Transcriptome analysis of liver tissue of zebrafish", "PRJNA1123436", "Other", "We studied transcriptomic changes in the liver of zebrafish exposed to a certain concentration of tire wear particles.", null, null, "Small particle size was purified for 15 days in a third parallel group", "5 5L", "STSC 5L", null, "isolate:zebrafish|breed:Wild type|age:3 months|collection date:2023 11 11|geo loc name:China:Qingdao|sex:missing|tissue:liver|isolation source:not applicable|lat lon:not collected|replicate:biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq in Danio rerio: adult liver", "STSC 5L", "STSC 5L", "normal RNA Seq nodules", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP513845", null, null, "STSC-5L.R1.fq.gz STSC-5L.R2.fq.gz", "fastq fastq", 7062074100.0, 23540247.0, "STSC 5L.R1.fq.gz", "0:150 1:150", "A:1830474945;C:1684428035;G:1721961922;T:1824937880;N:271318", 150, 150, null, null, 1830474945, 1684428035, 1721961922, 1824937880, 271318, "SRX24920053", "SRS21625715", "SRA1897556", "Qingdao University of Science and technology|College of marine science and biological engineeri", "Qingdao University of Science and technology", 2, 0.94308, 0.94287, 0.01164, 0.0115, 0.87578, 0.87649, 0.16764, 0.16771, 150, 150, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-06-13", "Adult", "Adult", "Liver", "Liver and Biliary System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["32718"], "units": {}, "query_ms": 9.594677001587115}