{"database": "metadata", "table": "run_metadata", "rows": [[31983, "SRR28892731", "SRX24451186", "SRS21204957", "SRP505641", "PRJNA1107713", "Tea polyphenols induce hepatotoxicity by interfering with adult zebrafish lipid metabolism and gut microbiota through the gut liver axis", "PRJNA1107713", "Other", "High dose tea polyphenols may promote fatty acid absorption by hepatocytes by up regulating FABP  CD36 and SRB1 genes  inhibiting fatty acid efflux by down regulating ABCA1 genes  and inhibiting fatty acid beta oxidation by down regulating CPT1 and ACAA2 genes  resulting in fat accumulation in hepatocytes  upregulation of inflammatory pathways  and increased expression of pro inflammatory factors TNF a and IL1 b.", null, null, null, null, "CONT3", null, "strain:not applicable|isolate:not applicable|breed:not collected|cultivar:not applicable|ecotype:AB ecotype|age:5 month|collection date:2022 11 24|geo loc name:China|sex:male|tissue:liver|replicate:replicate=biological replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "Adult zebrafish liver", "CON3", "CON3", "mRNAseq of zebrafish liver  replication 3 of CONT", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PolyA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP505641", null, null, "CONT3_1.fq.gz CONT3_2.fq.gz", "fastq fastq", 6595768200.0, 21985894.0, "CONT3 1.fq.gz", "0:150 1:150", "A:1762107185;C:1525175684;G:1547321856;T:1761163475;N:0", 150, 150, null, null, 1762107185, 1525175684, 1547321856, 1761163475, 0, "SRX24451186", "SRS21204957", "SRA1858747", "Beibu Gulf University|college of Food Engineering", "Beibu Gulf University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "China", "2024-05-04", "Adult", "Adult", "Liver", "Liver and Biliary System"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["31983"], "units": {}, "query_ms": 8.14306500251405}