{"database": "metadata", "table": "run_metadata", "rows": [[31892, "SRR28743287", "SRX24309168", "SRS21071678", "SRP502786", "PRJNA1102287", "Zebrafish inppl1a stl445 mutant RNAseq", "PRJNA1102287", "Other", "These are RNAseq data from pooled wild type and inppl1a stl445 Danio rerio mutant whole embryos at 3 dpf", null, null, "inppl1a stl445 mutant sample A", null, "inppl1a stl445 mutant sample A", null, "strain:inppl1a mutant A|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 dpf|dev stage:3 dpf|collection date:not applicable|geo loc name:not applicable|sex:not applicable|tissue:whole embryo A|biomaterial provider:GRAY LAB|genotype:inppl1a mutant A|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of inppl1a mutant A", "stl445A", "stl445A", "Novagene", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "Oligo-dT", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP502786", null, null, "stl445A_1.fq.gz stl445A_2.fq.gz", "fastq fastq", 6509496900.0, 21698323.0, "stl445A 1.fq.gz", "0:150 1:150", "A:1721159659;C:1544597555;G:1553920683;T:1689642737;N:176266", 150, 150, null, null, 1721159659, 1544597555, 1553920683, 1689642737, 176266, "SRX24309168", "SRS21071678", "SRA1848931", "Univeristy of Texas - Dell Pediatrics Reseach Institute|Nutritional Sciences", "Univeristy of Texas - Dell Pediatrics Reseach Institute", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "illumina", "novaseq_era", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2024-04-19", "Larval", "Larval", "Whole Organism", "All anatomical structures"]], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": ["rowid"], "primary_key_values": ["31892"], "units": {}, "query_ms": 8.28916700265836}