{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.platform = \"DNBSEQ\", technology = \"10x\" and tissue_curation_coarse = \"Nervous System\"", "rows": [[34508, "SRR32041235", "SRX27390499", "SRS23823272", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI]+VC 3 group", "Cr+VC 3", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 14|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 14|health state:health|sample type:tissue|lep:Cr+VC 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300476", "EHK0300476", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr+VC-3.R1.raw.fastq.gz Cr+VC-3.R2.raw.fastq.gz", "fastq fastq", 6579236402.0, 21785551.0, "Cr+VC 3.R1.raw.fastq.gz", "0:151 1:151", "A:1950296368;C:1342383640;G:1373591474;T:1912893257;N:71663", 151, 151, null, null, 1950296368, 1342383640, 1373591474, 1912893257, 71663, "SRX27390499", "SRS23823272", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34509, "SRR32041236", "SRX27390498", "SRS23823271", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI]+VC 2 group", "Cr+VC 2", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 14|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 14|health state:health|sample type:tissue|lep:Cr+VC 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300475", "EHK0300475", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr+VC-2.R1.raw.fastq.gz Cr+VC-2.R2.raw.fastq.gz", "fastq fastq", 7431192898.0, 24606599.0, "Cr+VC 2.R1.raw.fastq.gz", "0:151 1:151", "A:2185434880;C:1533450452;G:1567401090;T:2144825061;N:81415", 151, 151, null, null, 2185434880, 1533450452, 1567401090, 2144825061, 81415, "SRX27390498", "SRS23823271", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34510, "SRR32041237", "SRX27390497", "SRS23823270", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI]+VC 1 group", "Cr+VC 1", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 14|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 14|health state:health|sample type:tissue|lep:Cr+VC 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300474", "EHK0300474", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr+VC-1.R1.raw.fastq.gz Cr+VC-1.R2.raw.fastq.gz", "fastq fastq", 6385666180.0, 21144590.0, "Cr+VC 1.R1.raw.fastq.gz", "0:151 1:151", "A:1864936934;C:1329491594;G:1363211111;T:1827956599;N:69942", 151, 151, null, null, 1864936934, 1329491594, 1363211111, 1827956599, 69942, "SRX27390497", "SRS23823270", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34511, "SRR32041238", "SRX27390496", "SRS23823269", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI] 3 group", "Cr 3", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 13|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 13|health state:health|sample type:tissue|lep:Cr 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300473", "EHK0300473", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr-3.R1.raw.fastq.gz Cr-3.R2.raw.fastq.gz", "fastq fastq", 6339933716.0, 20993158.0, "Cr 3.R1.raw.fastq.gz", "0:151 1:151", "A:1873178321;C:1296125569;G:1333622723;T:1836939106;N:67997", 151, 151, null, null, 1873178321, 1296125569, 1333622723, 1836939106, 67997, "SRX27390496", "SRS23823269", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34512, "SRR32041239", "SRX27390495", "SRS23823268", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI] 2 group", "Cr 2", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 13|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 13|health state:health|sample type:tissue|lep:Cr 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300472", "EHK0300472", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr-2.R1.raw.fastq.gz Cr-2.R2.raw.fastq.gz", "fastq fastq", 6461518010.0, 21395755.0, "Cr 2.R1.raw.fastq.gz", "0:151 1:151", "A:1878799067;C:1352321588;G:1386809443;T:1843520259;N:67653", 151, 151, null, null, 1878799067, 1352321588, 1386809443, 1843520259, 67653, "SRX27390495", "SRS23823268", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34513, "SRR32041240", "SRX27390494", "SRS23823267", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "Cr[VI] 1 group", "Cr 1", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 13|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 13|health state:health|sample type:tissue|lep:Cr 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300471", "EHK0300471", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Cr-1.R1.raw.fastq.gz Cr-1.R2.raw.fastq.gz", "fastq fastq", 7143701582.0, 23654641.0, "Cr 1.R1.raw.fastq.gz", "0:151 1:151", "A:1955056767;C:1615392059;G:1650478323;T:1922695182;N:79251", 151, 151, null, null, 1955056767, 1615392059, 1650478323, 1922695182, 79251, "SRX27390494", "SRS23823267", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34514, "SRR32041241", "SRX27390493", "SRS23823266", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "control 3 group", "Con 3", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 12|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 12|health state:health|sample type:tissue|lep:Con 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300470", "EHK0300470", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Con-3.R1.raw.fastq.gz Con-3.R2.raw.fastq.gz", "fastq fastq", 6474159730.0, 21437615.0, "Con 3.R1.raw.fastq.gz", "0:151 1:151", "A:1937289968;C:1298659806;G:1337603954;T:1900535989;N:70013", 151, 151, null, null, 1937289968, 1298659806, 1337603954, 1900535989, 70013, "SRX27390493", "SRS23823266", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34515, "SRR32041242", "SRX27390492", "SRS23823265", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "control 2 group", "Con 2", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 12|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 12|health state:health|sample type:tissue|lep:Con 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300469", "EHK0300469", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Con-2.R1.raw.fastq.gz Con-2.R2.raw.fastq.gz", "fastq fastq", 8372440828.0, 27723314.0, "Con 2.R1.raw.fastq.gz", "0:151 1:151", "A:2235968446;C:1933538809;G:1977416201;T:2225425413;N:91959", 151, 151, null, null, 2235968446, 1933538809, 1977416201, 2225425413, 91959, "SRX27390492", "SRS23823265", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [34516, "SRR32041243", "SRX27390491", "SRS23823264", "SRP558202", "PRJNA1212333", "vitamin C mitigated hexavalent chromium toxicity by  microbiota gut brain axis in zebrafish", "PRJNA1212333", "Other", "Zebrafish is characterized by small size  rapid development  high fertility  short life cycle  easy and economical rearing; it has now become one of the model organisms for drug screening  disease research and ecological environment evaluation. Therefore  this project takes zebrafish as a model organism as the research object  and intends to study the role of vitamins in alleviating brain hexavalent chromium toxicity from the perspective of oxidative damage through the application of toxicology  transcriptome molecular biology and other techniques.", null, null, null, "control 1 group", "Con 1", null, "ecotype:wild type zebrafish|age:6 month|dev stage:adult|collection date:2023 08 12|geo loc name:China: Haikou  Hainan Province|sex:pooled male and female|tissue:brain|death date:2023 8 12|health state:health|sample type:tissue|lep:Con 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of brian:Adult female and male zebrafish", "EHK0300468", "EHK0300468", "normal", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-T7", null, "SRP558202", null, null, "Con-1.R1.raw.fastq.gz Con-1.R2.raw.fastq.gz", "fastq fastq", 6527063486.0, 21612793.0, "Con 1.R1.raw.fastq.gz", "0:151 1:151", "A:1939230604;C:1326702799;G:1357063348;T:1903995450;N:71285", 151, 151, null, null, 1939230604, 1326702799, 1357063348, 1903995450, 71285, "SRX27390491", "SRS23823264", "SRA2054545", "Hainan University|School of Life and Health Sciences", "Hainan University", null, null, null, null, null, null, null, null, null, null, null, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "China", "2025-01-18", "Adult", "Adult", "Brain", "Nervous System"], [71409, "SRR21590947", "SRX17592668", "SRS15130333", "SRP397443", "PRJNA880627", "Single cell sequencing of WT and hb egfaKO zebrafish spinal cord  at 1 week post sham or transection injury.", "GSE213435", "Transcriptome Analysis", "We identified hb egfa as a secreted factor necessary and sufficient for spinal cord regeneration in zebrafish. To elucidate the Hb egfa mechanism of action  we perforemd single cell sequencing of WT and hb egfaKO zebrafish spinal cord. Overall design: Adult zebrafish were subjected to spinal cord transection. 2 mm rostral and caudal to the transection site were collected at 1 xxx post injury. Spinal cord of sham injured animals was collected as control. Samples were and subjected to the 10X Genomics pipeline for single cell sequencing 4 samples in total  WT 1 wpi  WT sham  hb egfaKO 1 wpi  hb egfaKO sham.", null, "pubmed:37567873", null, "danRer11 WT 7dpi", "GSM6586115", null, "source name:spinal cord|genotype:WT|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:7dpi|geo loc name:missing|collection date:missing", "danRer11 WT 7dpi", "The demultiplexing  barcoded processing  gene counting and aggregation were made using the Cell Ranger software v6.0.1 https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest/what is cell ranger Assembly: danRer11 Supplementary files format and content: h5 files for count table", "spinal cord", null, "Samples were processed following the 10X Chromium platform following the manufacturer\u2019s guidelines  using 10X Single Cell 3\u2019 v3 chemistry 10X Genomics  Pleasanton  USA.", null, "genotype:WT|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:7dpi", "GSM6586115", "GSM6586115: danRer11 WT 7dpi; Danio rerio; RNA Seq", "GSM6586115 r1", "GSM6586115", "1", "Samples were processed following the 10X Chromium platform following the manufacturer's guidelines  using 10X Single Cell three prime v3 chemistry 10X Genomics  Pleasanton  USA.", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-G400", null, "SRP397443", null, null, "KP_VC_sample4_S1_L001_R2_001.fastq.gz KP_VC_sample4_S1_L001_R1_001.fastq.gz", "fastq fastq", 50454681480.0, 423988920.0, "GSM6586115 r1", "0:28 1:91", "A:14159328348;C:10820572193;G:11486998159;T:13985883249;N:1899531", 28, 91, null, null, 14159328348, 10820572193, 11486998159, 13985883249, 1899531, "SRX17592668", "SRS15130333", "SRA1500311", "Cell biology, Duke University", "Poss, Cell Biology, Duke University", 2, 0.00753, 0.88935, 0.00224, 0.18283, 0.98528, 0.77656, 0.24704, 0.5609, 28, 91, "T", "B", "sc-like readlen", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "United States", "2022-09-15", "Adult", "Adult", "Spinal Cord", "Nervous System"], [71410, "SRR21590948", "SRX17592667", "SRS15130332", "SRP397443", "PRJNA880627", "Single cell sequencing of WT and hb egfaKO zebrafish spinal cord  at 1 week post sham or transection injury.", "GSE213435", "Transcriptome Analysis", "We identified hb egfa as a secreted factor necessary and sufficient for spinal cord regeneration in zebrafish. To elucidate the Hb egfa mechanism of action  we perforemd single cell sequencing of WT and hb egfaKO zebrafish spinal cord. Overall design: Adult zebrafish were subjected to spinal cord transection. 2 mm rostral and caudal to the transection site were collected at 1 xxx post injury. Spinal cord of sham injured animals was collected as control. Samples were and subjected to the 10X Genomics pipeline for single cell sequencing 4 samples in total  WT 1 wpi  WT sham  hb egfaKO 1 wpi  hb egfaKO sham.", null, "pubmed:37567873", null, "danRer11 WT sham", "GSM6586114", null, "source name:spinal cord|genotype:WT|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:sham|geo loc name:missing|collection date:missing", "danRer11 WT sham", "The demultiplexing  barcoded processing  gene counting and aggregation were made using the Cell Ranger software v6.0.1 https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest/what is cell ranger Assembly: danRer11 Supplementary files format and content: h5 files for count table", "spinal cord", null, "Samples were processed following the 10X Chromium platform following the manufacturer\u2019s guidelines  using 10X Single Cell 3\u2019 v3 chemistry 10X Genomics  Pleasanton  USA.", null, "genotype:WT|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:sham", "GSM6586114", "GSM6586114: danRer11 WT sham; Danio rerio; RNA Seq", "GSM6586114 r1", "GSM6586114", "1", "Samples were processed following the 10X Chromium platform following the manufacturer's guidelines  using 10X Single Cell three prime v3 chemistry 10X Genomics  Pleasanton  USA.", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-G400", null, "SRP397443", null, null, "KP_VC_sample3_S1_L001_R1_001.fastq.gz KP_VC_sample3_S1_L001_R2_001.fastq.gz", "fastq fastq", 49434606578.0, 415416862.0, "GSM6586114 r1", "0:28 1:91", "A:13689985840;C:10750469002;G:11165716773;T:13825714788;N:2720175", 28, 91, null, null, 13689985840, 10750469002, 11165716773, 13825714788, 2720175, "SRX17592667", "SRS15130332", "SRA1500311", "Cell biology, Duke University", "Poss, Cell Biology, Duke University", 2, 0.01019, 0.90181, 0.00309, 0.16838, 0.98522, 0.78459, 0.27523, 0.51926, 28, 91, "T", "B", "sc-like readlen", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "United States", "2022-09-15", "Adult", "Adult", "Spinal Cord", "Nervous System"], [71411, "SRR21590949", "SRX17592666", "SRS15130331", "SRP397443", "PRJNA880627", "Single cell sequencing of WT and hb egfaKO zebrafish spinal cord  at 1 week post sham or transection injury.", "GSE213435", "Transcriptome Analysis", "We identified hb egfa as a secreted factor necessary and sufficient for spinal cord regeneration in zebrafish. To elucidate the Hb egfa mechanism of action  we perforemd single cell sequencing of WT and hb egfaKO zebrafish spinal cord. Overall design: Adult zebrafish were subjected to spinal cord transection. 2 mm rostral and caudal to the transection site were collected at 1 xxx post injury. Spinal cord of sham injured animals was collected as control. Samples were and subjected to the 10X Genomics pipeline for single cell sequencing 4 samples in total  WT 1 wpi  WT sham  hb egfaKO 1 wpi  hb egfaKO sham.", null, "pubmed:37567873", null, "danRer11 hbegfaKO 7dpi", "GSM6586113", null, "source name:spinal cord|genotype:hbegfaKO|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:7dpi|geo loc name:missing|collection date:missing", "danRer11 hbegfaKO 7dpi", "The demultiplexing  barcoded processing  gene counting and aggregation were made using the Cell Ranger software v6.0.1 https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest/what is cell ranger Assembly: danRer11 Supplementary files format and content: h5 files for count table", "spinal cord", null, "Samples were processed following the 10X Chromium platform following the manufacturer\u2019s guidelines  using 10X Single Cell 3\u2019 v3 chemistry 10X Genomics  Pleasanton  USA.", null, "genotype:hbegfaKO|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:7dpi", "GSM6586113", "GSM6586113: danRer11 hbegfaKO 7dpi; Danio rerio; RNA Seq", "GSM6586113 r1", "GSM6586113", "1", "Samples were processed following the 10X Chromium platform following the manufacturer's guidelines  using 10X Single Cell three prime v3 chemistry 10X Genomics  Pleasanton  USA.", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-G400", null, "SRP397443", null, null, "KP_VC_sample2_S1_L001_R1_001.fastq.gz KP_VC_sample2_S1_L001_R2_001.fastq.gz", "fastq fastq", 48346471411.0, 406272869.0, "GSM6586113 r1", "0:28 1:91", "A:13278513523;C:10826562396;G:11318717473;T:12918171753;N:4506266", 28, 91, null, null, 13278513523, 10826562396, 11318717473, 12918171753, 4506266, "SRX17592666", "SRS15130331", "SRA1500311", "Cell biology, Duke University", "Poss, Cell Biology, Duke University", 2, 0.01379, 0.89003, 0.00446, 0.1909, 0.97808, 0.78415, 0.32888, 0.6007, 28, 91, "T", "B", "sc-like readlen", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "United States", "2022-09-15", "Adult", "Adult", "Spinal Cord", "Nervous System"], [71412, "SRR21590950", "SRX17592665", "SRS15130330", "SRP397443", "PRJNA880627", "Single cell sequencing of WT and hb egfaKO zebrafish spinal cord  at 1 week post sham or transection injury.", "GSE213435", "Transcriptome Analysis", "We identified hb egfa as a secreted factor necessary and sufficient for spinal cord regeneration in zebrafish. To elucidate the Hb egfa mechanism of action  we perforemd single cell sequencing of WT and hb egfaKO zebrafish spinal cord. Overall design: Adult zebrafish were subjected to spinal cord transection. 2 mm rostral and caudal to the transection site were collected at 1 xxx post injury. Spinal cord of sham injured animals was collected as control. Samples were and subjected to the 10X Genomics pipeline for single cell sequencing 4 samples in total  WT 1 wpi  WT sham  hb egfaKO 1 wpi  hb egfaKO sham.", null, "pubmed:37567873", null, "danRer11 hbegfaKO sham", "GSM6586112", null, "source name:spinal cord|genotype:hbegfaKO|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:sham|geo loc name:missing|collection date:missing", "danRer11 hbegfaKO sham", "The demultiplexing  barcoded processing  gene counting and aggregation were made using the Cell Ranger software v6.0.1 https://support.10xgenomics.com/single cell gene expression/software/pipelines/latest/what is cell ranger Assembly: danRer11 Supplementary files format and content: h5 files for count table", "spinal cord", null, "Samples were processed following the 10X Chromium platform following the manufacturer\u2019s guidelines  using 10X Single Cell 3\u2019 v3 chemistry 10X Genomics  Pleasanton  USA.", null, "genotype:hbegfaKO|tissue:spinal cord|strain:Ekkwill EK|age:6 month|treatment:sham", "GSM6586112", "GSM6586112: danRer11 hbegfaKO sham; Danio rerio; RNA Seq", "GSM6586112 r1", "GSM6586112", "1", "Samples were processed following the 10X Chromium platform following the manufacturer's guidelines  using 10X Single Cell three prime v3 chemistry 10X Genomics  Pleasanton  USA.", null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "DNBSEQ", "DNBSEQ-G400", null, "SRP397443", null, null, "KP_VC_sample1_S1_L001_R1_001.fastq.gz KP_VC_sample1_S1_L001_R2_001.fastq.gz", "fastq fastq", 50009919813.0, 420251427.0, "GSM6586112 r1", "0:28 1:91", "A:13721824199;C:11296818044;G:11807686254;T:13179637678;N:3953638", 28, 91, null, null, 13721824199, 11296818044, 11807686254, 13179637678, 3953638, "SRX17592665", "SRS15130330", "SRA1500311", "Cell biology, Duke University", "Poss, Cell Biology, Duke University", 2, 0.01254, 0.83945, 0.00371, 0.16358, 0.98378, 0.80728, 0.25895, 0.57907, 28, 91, "T", "B", "sc-like readlen", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "United States", "2022-09-15", "Adult", "Adult", "Spinal Cord", "Nervous System"]], "truncated": false, "filtered_table_rows_count": 13, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", 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