{"database": "metadata", "table": "run_metadata", "is_view": false, "human_description_en": "where experiment.platform = \"BGISEQ\", technology = \"unknown\" and tissue_curation_coarse = \"Cardiovascular System\"", "rows": [[33609, "SRR30247666", "SRX25709110", "SRS22350227", "SRP526520", "PRJNA1148340", "RNA Seq analyses of hey2 mutant and wild type sibling zebrafish hearts", "PRJNA1148340", "Other", "To assess the effects of Hey2 deficiency  we performed transcriptome analyses of hey2 mutant and wild type sibling zebrafish hearts at 3 mpf.", null, null, null, "RNA Seq for hey25nt /  mutant zebrafish hearts at 3 mpf  rep3", "KO3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, 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Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap sham 3", "GSM3070341", null, "tissue:7 xxx post injury  sham  yap mutant zebrafish heart  replicate 3|injury type:Sham Injured|genotype:yap  / ", "zebrafish heart yap sham 3", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  yap mutant zebrafish heart  replicate 3", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap  / ", "GSM3070341", "GSM3070341: zebrafish heart yap sham 3; Danio rerio; RNA Seq", "GSM3070341", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070341", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAFRACPEI-39_1.fq.gz", "fastq", 951999850.0, 19039997.0, "GSM3070341 r1", "0:50", "A:264195948;C:210535284;G:216206679;T:260149711;N:912228", 50, null, null, null, 264195948, 210535284, 216206679, 260149711, 912228, "SRX3858788", "SRS3106147", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.94079, null, 0.07209, null, 0.77506, null, 0.57202, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48010, "SRR6910781", "SRX3858787", "SRS3106141", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap sham 2", "GSM3070340", null, "tissue:7 xxx post injury  sham  yap mutant zebrafish heart  replicate 2|injury type:Sham Injured|genotype:yap  / ", "zebrafish heart yap sham 2", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  yap mutant zebrafish heart  replicate 2", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap  / ", "GSM3070340", "GSM3070340: zebrafish heart yap sham 2; Danio rerio; RNA Seq", "GSM3070340", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070340", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAERABPEI-38_1.fq.gz", "fastq", 1422243650.0, 28444873.0, "GSM3070340 r1", "0:50", "A:396912878;C:311739320;G:316711298;T:395335784;N:1544370", 50, null, null, null, 396912878, 311739320, 316711298, 395335784, 1544370, "SRX3858787", "SRS3106141", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.92453, null, 0.08919, null, 0.75402, null, 0.56482, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48011, "SRR6910780", "SRX3858786", "SRS3106146", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap sham 1", "GSM3070339", null, "tissue:7 xxx post injury  sham  yap mutant zebrafish heart  replicate 1|injury type:Sham Injured|genotype:yap  / ", "zebrafish heart yap sham 1", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  yap mutant zebrafish heart  replicate 1", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap  / ", "GSM3070339", "GSM3070339: zebrafish heart yap sham 1; Danio rerio; RNA Seq", "GSM3070339", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070339", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAADRABPEI-35_1.fq.gz", "fastq", 1414732800.0, 28294656.0, "GSM3070339 r1", "0:50", "A:382546700;C:323161121;G:333740729;T:373569891;N:1714359", 50, null, null, null, 382546700, 323161121, 333740729, 373569891, 1714359, "SRX3858786", "SRS3106146", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93663, null, 0.06374, null, 0.78476, null, 0.50181, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48012, "SRR6910779", "SRX3858785", "SRS3106140", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap cryo 3", "GSM3070338", null, "tissue:7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 3|injury type:Cryoinjured|genotype:yap  / ", "zebrafish heart yap cryo 3", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 3", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap  / ", "GSM3070338", "GSM3070338: zebrafish heart yap cryo 3; Danio rerio; RNA Seq", "GSM3070338", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070338", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAALRABPEI-45_1.fq.gz", "fastq", 1417604550.0, 28352091.0, "GSM3070338 r1", "0:50", "A:396320928;C:310857539;G:315507312;T:393521845;N:1396926", 50, null, null, null, 396320928, 310857539, 315507312, 393521845, 1396926, "SRX3858785", "SRS3106140", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93466, null, 0.08509, null, 0.76339, null, 0.55298, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48013, "SRR6910778", "SRX3858784", "SRS3106139", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap cryo 2", "GSM3070337", null, "tissue:7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 2|injury type:Cryoinjured|genotype:yap  / ", "zebrafish heart yap cryo 2", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 2", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap  / ", "GSM3070337", "GSM3070337: zebrafish heart yap cryo 2; Danio rerio; RNA Seq", "GSM3070337", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070337", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAKRABPEI-44_1.fq.gz", "fastq", 1411684000.0, 28233680.0, "GSM3070337 r1", "0:50", "A:380723872;C:320871596;G:326847305;T:381926882;N:1314345", 50, null, null, null, 380723872, 320871596, 326847305, 381926882, 1314345, "SRX3858784", "SRS3106139", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93583, null, 0.07153, null, 0.76209, null, 0.53446, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48014, "SRR6910777", "SRX3858783", "SRS3106138", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart yap cryo 1", "GSM3070336", null, "tissue:7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 1|injury type:Cryoinjured|genotype:yap  / ", "zebrafish heart yap cryo 1", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  yap mutant zebrafish heart  replicate 1", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap  / ", "GSM3070336", "GSM3070336: zebrafish heart yap cryo 1; Danio rerio; RNA Seq", "GSM3070336", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070336", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170901_I13_CL100030164_L2_HK500ZEBljgRAAARAAPEI-2_1.fq.gz", "fastq", 983464900.0, 19669298.0, "GSM3070336 r1", "0:50", "A:281927620;C:213905948;G:225993312;T:260949314;N:688706", 50, null, null, null, 281927620, 213905948, 225993312, 260949314, 688706, "SRX3858783", "SRS3106138", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93596, null, 0.08164, null, 0.75753, null, 0.5319, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48015, "SRR6910776", "SRX3858782", "SRS3106137", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt sham 3", "GSM3070335", null, "tissue:7 xxx post injury  sham  wildtype zebrafish heart  replicate 3|injury type:Sham Injured|genotype:yap +/+", "zebrafish heart wt sham 3", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  wildtype zebrafish heart  replicate 3", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap +/+", "GSM3070335", "GSM3070335: zebrafish heart wt sham 3; Danio rerio; RNA Seq", "GSM3070335", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070335", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAACRABPEI-34_1.fq.gz", "fastq", 1422074600.0, 28441492.0, "GSM3070335 r1", "0:50", "A:391714900;C:316763778;G:323715902;T:388371260;N:1508760", 50, null, null, null, 391714900, 316763778, 323715902, 388371260, 1508760, "SRX3858782", "SRS3106137", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93511, null, 0.06875, null, 0.78374, null, 0.5442, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48016, "SRR6910775", "SRX3858781", "SRS3106142", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt sham 2", "GSM3070334", null, "tissue:7 xxx post injury  sham  wildtype zebrafish heart  replicate 2|injury type:Sham Injured|genotype:yap +/+", "zebrafish heart wt sham 2", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  wildtype zebrafish heart  replicate 2", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap +/+", "GSM3070334", "GSM3070334: zebrafish heart wt sham 2; Danio rerio; RNA Seq", "GSM3070334", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070334", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAABRABPEI-32_1.fq.gz", "fastq", 1422698650.0, 28453973.0, "GSM3070334 r1", "0:50", "A:393538224;C:315070062;G:319739652;T:393085965;N:1264747", 50, null, null, null, 393538224, 315070062, 319739652, 393085965, 1264747, "SRX3858781", "SRS3106142", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93436, null, 0.08499, null, 0.76599, null, 0.51331, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48017, "SRR6910774", "SRX3858780", "SRS3106135", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt sham 1", "GSM3070333", null, "tissue:7 xxx post injury  sham  wildtype zebrafish heart  replicate 1|injury type:Sham Injured|genotype:yap +/+", "zebrafish heart wt sham 1", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  sham  wildtype zebrafish heart  replicate 1", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Sham Injured|genotype:yap +/+", "GSM3070333", "GSM3070333: zebrafish heart wt sham 1; Danio rerio; RNA Seq", "GSM3070333", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070333", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAARAAPEI-30_1.fq.gz", "fastq", 1421323500.0, 28426470.0, "GSM3070333 r1", "0:50", "A:398883510;C:309497967;G:316648847;T:394532024;N:1761152", 50, null, null, null, 398883510, 309497967, 316648847, 394532024, 1761152, "SRX3858780", "SRS3106135", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93565, null, 0.0827, null, 0.77749, null, 0.54321, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48018, "SRR6910773", "SRX3858779", "SRS3106136", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt cryo 3", "GSM3070332", null, "tissue:7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 3|injury type:Cryoinjured|genotype:yap +/+", "zebrafish heart wt cryo 3", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 3", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap +/+", "GSM3070332", "GSM3070332: zebrafish heart wt cryo 3; Danio rerio; RNA Seq", "GSM3070332", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070332", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAIRABPEI-42_1.fq.gz", "fastq", 1420446700.0, 28408934.0, "GSM3070332 r1", "0:50", "A:390252025;C:317481829;G:322013373;T:389237056;N:1462417", 50, null, null, null, 390252025, 317481829, 322013373, 389237056, 1462417, "SRX3858779", "SRS3106136", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.92817, null, 0.08055, null, 0.75304, null, 0.54626, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48019, "SRR6910772", "SRX3858778", "SRS3106133", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt cryo 2", "GSM3070331", null, "tissue:7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 2|injury type:Cryoinjured|genotype:yap +/+", "zebrafish heart wt cryo 2", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 2", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap +/+", "GSM3070331", "GSM3070331: zebrafish heart wt cryo 2; Danio rerio; RNA Seq", "GSM3070331", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070331", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAHRABPEI-41_1.fq.gz", "fastq", 1422338300.0, 28446766.0, "GSM3070331 r1", "0:50", "A:393674065;C:315125662;G:322045666;T:389932855;N:1560052", 50, null, null, null, 393674065, 315125662, 322045666, 389932855, 1560052, "SRX3858778", "SRS3106133", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.9294, null, 0.08412, null, 0.75749, null, 0.52514, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [48020, "SRR6910771", "SRX3858777", "SRS3106134", "SRP136723", "PRJNA447594", "RNAseq of regenerating yap mutant zebrafish hearts", "GSE112452", "Transcriptome Analysis", "A Yap knockout zebrafish line was used to observe how loss of Yap affects cardiac regeneration. Overall design: Cryoinjury or sham surgeries were performed on 6 mpf 12 mpf zebrafish ventricles. At 7 xxx post injury  whole hearts were collected and RNAseq was performed.", null, "pubmed:30295714", null, "zebrafish heart wt cryo 1", "GSM3070330", null, "tissue:7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 1|injury type:Cryoinjured|genotype:yap +/+", "zebrafish heart wt cryo 1", "Primary sequencing data was conducted with a BGISEQ 500 50SE at 20M reads per sample. Raw reads are subjected to quality control QC to determine if a resequencing step is needed. post QC  raw reads are filtered into clean reads which are aligned to the reference sequences. \"Dirty\" raw reads are reads which contain the sequence of adaptor  high content of unknown bases and low quality reads  and are removed before analysis. Bowtie2 was used to map clean reads to reference gene  and HISAT used to reference genome. The Fragments Per Kilobase of transcript per Million mapped reads FPKM  method is used to calculated expression level. Genome build: GRCz11 Supplementary files format and content: Excel files containing FKPM values for expression levels.", "7 xxx post injury  cryoinjury  wildtype zebrafish heart  replicate 1", "Zebrafish were anesthetized in 0.02% tricaine. An incision was made through the chest to gain access to the heart. Ventricles were exposed for roughly four seconds to a 0.5mm liquid nitrogen chilled stainless steel probe for cryoinjury or left alone for sham injury", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "Zebrafish Danio rerio were maintained at 28.5C on an Aquatic Habitats recirculating filtered water system in reverse osmosis purified water supplemented with Instant Ocean salts 60 mg/l on a 14 h light:10 h dark lighting cycle and fed a standard diet.", "injury type:Cryoinjured|genotype:yap +/+", "GSM3070330", "GSM3070330: zebrafish heart wt cryo 1; Danio rerio; RNA Seq", "GSM3070330", null, "1", "RNA was extracted using Trizol Thermo Fisher Scientific phenol cholorform extraction. RNA quality was determined using an Agilent BioAnalyzer. RNA libraries were prepared for sequencing using the low input poly A BGISEQ 500RSRNASeqTranscriptome protocol.", "GEO Accession:GSM3070330", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP136723", null, null, "170715_I13_CL100028033_L1_HK500ZEBvisRAAGRABPEI-40_1.fq.gz", "fastq", 1419380450.0, 28387609.0, "GSM3070330 r1", "0:50", "A:393618390;C:313492075;G:321642338;T:389289283;N:1338364", 50, null, null, null, 393618390, 313492075, 321642338, 389289283, 1338364, "SRX3858777", "SRS3106134", "SRA675997", "GEO", "Brian Link, Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin", 1, 0.93599, null, 0.08586, null, 0.75381, null, 0.52578, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "poly_a", "unknown", "bulk", "unknown", "unknown", null, "United States", "2018-03-28", "Undetermined", "Adult", "Heart", "Cardiovascular System"], [55977, "SRR10895882", "SRX7564597", "SRS6001804", "SRP241982", "PRJNA599026", "Project of basal ray finned fishes", "PRJNA599026", "Other", "The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish  their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates  we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.", null, "pubmed:33545088;pubmed:12470943", null, null, "Zebrafish 008", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio : adult", "CL100101924 L01 10", "CL100101924 L01 10", null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP241982", null, null, "CL100101924_L01_545_2.fq.gz CL100101924_L01_545_1.fq.gz", "fastq fastq", 9098943800.0, 90989438.0, "CL100101924 L01 545 1.fq.gz", "0:100 1:100", "A:2494855042;C:2016596912;G:2050775890;T:2525488540;N:11227416", 100, 100, null, null, 2494855042, 2016596912, 2050775890, 2525488540, 11227416, "SRX7564597", "SRS6001804", "SRA1026516", "BGI|BGI-Research", "BGI", 1, 0.93737, null, 0.07867, null, 0.76061, null, 0.53141, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [55978, "SRR10895883", "SRX7564596", "SRS6001804", "SRP241982", "PRJNA599026", "Project of basal ray finned fishes", "PRJNA599026", "Other", "The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish  their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates  we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.", null, "pubmed:33545088;pubmed:12470943", null, null, "Zebrafish 008", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio : adult", "CL100103178 L01 4", "CL100103178 L01 4", null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP241982", null, null, "CL100103178_L01_570_2.fq.gz CL100103178_L01_570_1.fq.gz", "fastq fastq", 6098551000.0, 60985510.0, "CL100103178 L01 570 1.fq.gz", "0:100 1:100", "A:1665824009;C:1362170830;G:1387665851;T:1676412762;N:6477548", 100, 100, null, null, 1665824009, 1362170830, 1387665851, 1676412762, 6477548, "SRX7564596", "SRS6001804", "SRA1026516", "BGI|BGI-Research", "BGI", 1, 0.9281, null, 0.07522, null, 0.77715, null, 0.52597, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [55979, "SRR10895884", "SRX7564595", "SRS6001804", "SRP241982", "PRJNA599026", "Project of basal ray finned fishes", "PRJNA599026", "Other", "The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish  their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates  we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.", null, "pubmed:33545088;pubmed:12470943", null, null, "Zebrafish 008", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio : adult", "CL100103178 L01 3", "CL100103178 L01 3", null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP241982", null, null, "CL100103178_L01_568_2.fq.gz CL100103178_L01_568_1.fq.gz", "fastq fastq", 7674097800.0, 76740978.0, "CL100103178 L01 568 1.fq.gz", "0:100 1:100", "A:2066126344;C:1741642506;G:1775116741;T:2081782365;N:9429844", 100, 100, null, null, 2066126344, 1741642506, 1775116741, 2081782365, 9429844, "SRX7564595", "SRS6001804", "SRA1026516", "BGI|BGI-Research", "BGI", 1, 0.92233, null, 0.07056, null, 0.76029, null, 0.55672, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [55980, "SRR10895885", "SRX7564594", "SRS6001804", "SRP241982", "PRJNA599026", "Project of basal ray finned fishes", "PRJNA599026", "Other", "The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish  their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates  we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.", null, "pubmed:33545088;pubmed:12470943", null, null, "Zebrafish 008", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio : adult", "CL100103178 L01 2", "CL100103178 L01 2", null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP241982", null, null, "CL100103178_L01_569_1.fq.gz CL100103178_L01_569_2.fq.gz", "fastq fastq", 10407446000.0, 104074460.0, "CL100103178 L01 569 1.fq.gz", "0:100 1:100", "A:2806156548;C:2359148121;G:2410612409;T:2819342794;N:12186128", 100, 100, null, null, 2806156548, 2359148121, 2410612409, 2819342794, 12186128, "SRX7564594", "SRS6001804", "SRA1026516", "BGI|BGI-Research", "BGI", 1, 0.9202, null, 0.06921, null, 0.77384, null, 0.56843, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [55981, "SRR10895886", "SRX7564593", "SRS6001804", "SRP241982", "PRJNA599026", "Project of basal ray finned fishes", "PRJNA599026", "Other", "The project is to study the oldest fish lineages in the ray finned fishes. Although they belong to fish  their body structure and behavior remain highly similar to that of the tetrapods. Through comparative genome analysis with living vertebrates  we provides insights into the molecular basis of terrestrial adaptation of basal ray finned fishes.", null, "pubmed:33545088;pubmed:12470943", null, null, "Zebrafish 008", null, "strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:Adult|sex:not determined|tissue:Heart|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq of Danio rerio : adult", "CL100103178 L01", "CL100103178 L01", null, null, null, "RNA-Seq", "TRANSCRIPTOMIC", "RANDOM", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP241982", null, null, "CL100103178_L01_571_2.fq.gz CL100103178_L01_571_1.fq.gz", "fastq fastq", 8778390800.0, 87783908.0, "CL100103178 L01 571 1.fq.gz", "0:100 1:100", "A:2364575734;C:1991773326;G:2031934839;T:2379995507;N:10111394", 100, 100, null, null, 2364575734, 1991773326, 2031934839, 2379995507, 10111394, "SRX7564593", "SRS6001804", "SRA1026516", "BGI|BGI-Research", "BGI", 1, 0.92192, null, 0.08454, null, 0.7544, null, 0.53692, null, 100, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2020-01-15", "Adult", "Adult", "Heart", "Cardiovascular System"], [57259, "SRR11294128", "SRX7899687", "SRS6307737", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep3", "GSM4407932", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407932", "GSM4407932: Ventricles  uninj p53 pos.rep3; Danio rerio; RNA Seq", "GSM4407932", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407932", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAADRAAPEI-512_1.fq.gz", "fastq", 1835058950.0, 36701179.0, "GSM4407932 r1", "0:50", "A:502113193;C:411542245;G:409297699;T:512105813;N:0", 50, null, null, null, 502113193, 411542245, 409297699, 512105813, 0, "SRX7899687", "SRS6307737", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93734, null, 0.0825, null, 0.77094, null, 0.54336, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57260, "SRR11294127", "SRX7899686", "SRS6307736", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep2", "GSM4407931", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407931", "GSM4407931: Ventricles  uninj p53 pos.rep2; Danio rerio; RNA Seq", "GSM4407931", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407931", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAACRAAPEI-511_1.fq.gz", "fastq", 1834865450.0, 36697309.0, "GSM4407931 r1", "0:50", "A:505143598;C:405191113;G:410587735;T:513943004;N:0", 50, null, null, null, 505143598, 405191113, 410587735, 513943004, 0, "SRX7899686", "SRS6307736", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93631, null, 0.08049, null, 0.76481, null, 0.50179, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57261, "SRR11294126", "SRX7899685", "SRS6307735", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 pos.rep1", "GSM4407930", null, "source name:Ventricles of uninjured TgtpWT zebrafish|genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 pos.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured TgtpWT zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53WT|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407930", "GSM4407930: Ventricles  uninj p53 pos.rep1; Danio rerio; RNA Seq", "GSM4407930", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407930", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAABRAAPEI-510_1.fq.gz", "fastq", 1834689950.0, 36693799.0, "GSM4407930 r1", "0:50", "A:504160420;C:403583740;G:412496526;T:514449264;N:0", 50, null, null, null, 504160420, 403583740, 412496526, 514449264, 0, "SRX7899685", "SRS6307735", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93629, null, 0.08291, null, 0.77356, null, 0.49244, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57262, "SRR11294125", "SRX7899684", "SRS6307734", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep3", "GSM4407929", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407929", "GSM4407929: Ventricles  uninj p53 neg.rep3; Danio rerio; RNA Seq", "GSM4407929", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407929", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAIRAAPEI-521_1.fq.gz", "fastq", 1834395600.0, 36687912.0, "GSM4407929 r1", "0:50", "A:499900882;C:409384440;G:414252017;T:510858261;N:0", 50, null, null, null, 499900882, 409384440, 414252017, 510858261, 0, "SRX7899684", "SRS6307734", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93583, null, 0.07847, null, 0.76974, null, 0.54357, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57263, "SRR11294124", "SRX7899683", "SRS6307733", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep2", "GSM4407928", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407928", "GSM4407928: Ventricles  uninj p53 neg.rep2; Danio rerio; RNA Seq", "GSM4407928", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407928", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAHRAAPEI-520_1.fq.gz", "fastq", 1834233850.0, 36684677.0, "GSM4407928 r1", "0:50", "A:504582681;C:405014837;G:412005765;T:512630567;N:0", 50, null, null, null, 504582681, 405014837, 412005765, 512630567, 0, "SRX7899683", "SRS6307733", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.9324, null, 0.07997, null, 0.77975, null, 0.54924, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57264, "SRR11294123", "SRX7899682", "SRS6307732", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  uninj p53 neg.rep1", "GSM4407927", null, "source name:Ventricles of uninjured Tgtp53M214K zebrafish|genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  uninj p53 neg.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of uninjured Tgtp53M214K zebrafish", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:Tgtp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407927", "GSM4407927: Ventricles  uninj p53 neg.rep1; Danio rerio; RNA Seq", "GSM4407927", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407927", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAGRAAPEI-519_1.fq.gz", "fastq", 1834275500.0, 36685510.0, "GSM4407927 r1", "0:50", "A:505039122;C:403354337;G:413206780;T:512675261;N:0", 50, null, null, null, 505039122, 403354337, 413206780, 512675261, 0, "SRX7899682", "SRS6307732", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93529, null, 0.07696, null, 0.77268, null, 0.49743, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57265, "SRR11294122", "SRX7899681", "SRS6307731", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep3", "GSM4407926", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407926", "GSM4407926: Ventricles  inj p53 pos.rep3; Danio rerio; RNA Seq", "GSM4407926", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407926", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAFRAAPEI-518_1.fq.gz", "fastq", 1835175950.0, 36703519.0, "GSM4407926 r1", "0:50", "A:499063627;C:408145558;G:418471943;T:509494822;N:0", 50, null, null, null, 499063627, 408145558, 418471943, 509494822, 0, "SRX7899681", "SRS6307731", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92833, null, 0.09812, null, 0.73312, null, 0.51303, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57266, "SRR11294121", "SRX7899680", "SRS6307730", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep2", "GSM4407925", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407925", "GSM4407925: Ventricles  inj p53 pos.rep2; Danio rerio; RNA Seq", "GSM4407925", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407925", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAERAAPEI-517_1.fq.gz", "fastq", 1835814750.0, 36716295.0, "GSM4407925 r1", "0:50", "A:502904715;C:405114927;G:414615503;T:513179605;N:0", 50, null, null, null, 502904715, 405114927, 414615503, 513179605, 0, "SRX7899680", "SRS6307730", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92779, null, 0.10001, null, 0.73943, null, 0.49706, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57267, "SRR11294120", "SRX7899679", "SRS6307729", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 pos.rep1", "GSM4407924", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 pos.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407924", "GSM4407924: Ventricles  inj p53 pos.rep1; Danio rerio; RNA Seq", "GSM4407924", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407924", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAARAAPEI-509_1.fq.gz", "fastq", 1835668100.0, 36713362.0, "GSM4407924 r1", "0:50", "A:499256851;C:409731957;G:416052681;T:510626611;N:0", 50, null, null, null, 499256851, 409731957, 416052681, 510626611, 0, "SRX7899679", "SRS6307729", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92969, null, 0.10126, null, 0.73417, null, 0.51885, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57268, "SRR11294119", "SRX7899678", "SRS6307728", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep3", "GSM4407923", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep3", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407923", "GSM4407923: Ventricles  inj p53 neg.rep3; Danio rerio; RNA Seq", "GSM4407923", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407923", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAALRAAPEI-524_1.fq.gz", "fastq", 1835232550.0, 36704651.0, "GSM4407923 r1", "0:50", "A:499303964;C:408224392;G:413995749;T:513708445;N:0", 50, null, null, null, 499303964, 408224392, 413995749, 513708445, 0, "SRX7899678", "SRS6307728", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93048, null, 0.09466, null, 0.73949, null, 0.4978, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57269, "SRR11294118", "SRX7899677", "SRS6307727", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep2", "GSM4407922", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep2", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407922", "GSM4407922: Ventricles  inj p53 neg.rep2; Danio rerio; RNA Seq", "GSM4407922", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407922", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAKRAAPEI-523_1.fq.gz", "fastq", 1835660400.0, 36713208.0, "GSM4407922 r1", "0:50", "A:500792390;C:406784182;G:416023927;T:512059901;N:0", 50, null, null, null, 500792390, 406784182, 416023927, 512059901, 0, "SRX7899677", "SRS6307727", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.92669, null, 0.09942, null, 0.72817, null, 0.51645, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [57270, "SRR11294117", "SRX7899676", "SRS6307726", "SRP252540", "PRJNA612190", "Tp53 suppression promotes cardiomyocyte proliferation during zebrafish heart regeneration", "GSE146859", "Transcriptome Analysis", "Transcriptome sequencing of uninjured and regenerating 7dpi tp53M214K and tp53WT ventricles. Overall design: 4 experimental groups were analyzed in triplicates: 1 uninjured ventricle of tp53 mutant fish; 2 injured ventricle of tp53 mutant fish; 3 uninjured ventricle of tp53 wild type fish; 4 injured ventricle of tp53 wild type fish.", null, "pubmed:32877671", null, "Ventricles  inj p53 neg.rep1", "GSM4407921", null, "source name:Ventricles of TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes|genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "Ventricles  inj p53 neg.rep1", "RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. Genome build: danRer10 Supplementary files format and content: raw counts of sequencing reads for the features of interest", "Ventricles of  TgCmlc2:CreER; \u03b2 actin2:loxp mCherry STOP loxp DTA; tp53M214K zebrafish 7 days post tamoxifen induced genetic ablation of cardiomyocytes", "Fish were treated  17 hours  with 0.5 \u03bcM tamoxifen to ablate cardiomyocytes. Control fish were equally treated.", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "Fish were grown at 28 degrees.  Male and female animals between 6 month and 12 month and of 2 cm in length were used.", "genotype:TgCmlc2:CreER; beta actin2:loxp mCherry STOP loxp DTA; tp53M214K|strain:EK /AB strain|treatment: 17 hours treatment with 0.5 \u03bcM tamoxifen|tissue:Ventricles", "GSM4407921", "GSM4407921: Ventricles  inj p53 neg.rep1; Danio rerio; RNA Seq", "GSM4407921", null, "1", "Zebrafish ventricles were collected and placed in cold PBS while still pumping to help decrease intra ventricular blood. Atrium and outflow tract were removed and ventricles 5 per sample were homogenized in Trizol using a Tissue Lyser II QIAGEN. RNA was extracted using the standard Trizol protocol  genomic DNA removed using RNA clean and Concentrator Kit Zymo Research and processed for libraries preparation. Libraries were constructed by single end 50 bp sequencing  with 30 M reads/sample was performed at BGI. RNA Seq reads were trimmed by Trim Galore 0.6.4  with  q 15 and then mapped with TopHat v 2.1.1  with parameters   b2 very sensitive   no coverage search and supplying the UCSC danRer10 refSeq gene annotation. Gene level read counts were obtained using the htseq count v1.6.1 by the reads with MAPQ greater than 30. DESeq2 v 1.26.0 was employed for differential expression analysis.", "GEO Accession:GSM4407921", "RNA-Seq", "TRANSCRIPTOMIC", "cDNA", "SINGLE", "BGISEQ", "BGISEQ-500", null, "SRP252540", null, null, "CL100137114_L1_HK500ZEBortRAAJRAAPEI-522_1.fq.gz", "fastq", 1835899700.0, 36717994.0, "GSM4407921 r1", "0:50", "A:498483398;C:409943675;G:418983494;T:508489133;N:0", 50, null, null, null, 498483398, 409943675, 418983494, 508489133, 0, "SRX7899676", "SRS6307726", "SRA1054226", "GEO", "Poss, Cell Biology, Duke University", 1, 0.93061, null, 0.09272, null, 0.73762, null, 0.51108, null, 50, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "cdna_unspecified", "unknown", "bulk", "unknown", "unknown", null, "United States", "2020-03-12", "Adult", "Adult", "Heart", "Cardiovascular System"], [70178, "SRR19568478", "SRX15620532", "SRS13321067", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "TCDD 4", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:8|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment", "TCDD 4", "TCDD 4", "RNA seq of zebrafish Danio rerio: replicate 4 of TCDD treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "TCDD_4_1.fq.gz TCDD_4_2.fq.gz", "fastq fastq", 6664935600.0, 44432904.0, "TCDD 4 1.fq.gz", "0:150 1:150", "A:1778771695;C:1547959320;G:1547444025;T:1790760560;N:0", 150, 150, null, null, 1778771695, 1547959320, 1547444025, 1790760560, 0, "SRX15620532", "SRS13321067", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.93639, null, 0.07898, null, 0.67649, null, 0.51984, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70179, "SRR19568479", "SRX15620531", "SRS13321066", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "TCDD 3", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:7|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment", "TCDD 3", "TCDD 3", "RNA seq of zebrafish Danio rerio: replicate 3 of TCDD treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "TCDD_3_1.fq.gz TCDD_3_2.fq.gz", "fastq fastq", 6763596300.0, 45090642.0, "TCDD 3 1.fq.gz", "0:150 1:150", "A:1802620229;C:1572061293;G:1575663838;T:1813250940;N:0", 150, 150, null, null, 1802620229, 1572061293, 1575663838, 1813250940, 0, "SRX15620531", "SRS13321066", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.93871, null, 0.07491, null, 0.67754, null, 0.51592, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70180, "SRR19568480", "SRX15620530", "SRS13321065", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "TCDD 2", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:6|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment", "TCDD 2", "TCDD 2", "RNA seq of zebrafish Danio rerio: replicate 2 of TCDD treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "TCDD_2_1.fq.gz TCDD_2_2.fq.gz", "fastq fastq", 6628062600.0, 44187084.0, "TCDD 2 1.fq.gz", "0:150 1:150", "A:1772545581;C:1536779192;G:1535280305;T:1783457522;N:0", 150, 150, null, null, 1772545581, 1536779192, 1535280305, 1783457522, 0, "SRX15620530", "SRS13321065", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.93556, null, 0.07257, null, 0.68067, null, 0.51787, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70181, "SRR19568481", "SRX15620529", "SRS13321064", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "TCDD 1", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:5|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of TCDD treatment", "TCDD 1", "TCDD 1", "RNA seq of zebrafish Danio rerio: replicate 1 of TCDD treatment", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "TCDD_1_1.fq.gz TCDD_1_2.fq.gz", "fastq fastq", 6661439100.0, 44409594.0, "TCDD 1 1.fq.gz", "0:150 1:150", "A:1776797062;C:1548148693;G:1547340992;T:1789152353;N:0", 150, 150, null, null, 1776797062, 1548148693, 1547340992, 1789152353, 0, "SRX15620529", "SRS13321064", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.93716, null, 0.07287, null, 0.67487, null, 0.50549, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70182, "SRR19568482", "SRX15620528", "SRS13321062", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "Ctrl 4", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:4|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of control", "Ctrl 4", "Ctrl 4", "RNA seq of zebrafish Danio rerio: replicate 4 of control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "Ctrl_4_1.fq.gz Ctrl_4_2.fq.gz", "fastq fastq", 6737187300.0, 44914582.0, "Ctrl 4 1.fq.gz", "0:150 1:150", "A:1792212366;C:1570555803;G:1570692729;T:1803726402;N:0", 150, 150, null, null, 1792212366, 1570555803, 1570692729, 1803726402, 0, "SRX15620528", "SRS13321062", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.94104, null, 0.07451, null, 0.67821, null, 0.51308, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70183, "SRR19568483", "SRX15620527", "SRS13321063", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "Ctrl 3", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of control", "Ctrl 3", "Ctrl 3", "RNA seq of zebrafish Danio rerio: replicate 3 of control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "Ctrl_3_1.fq.gz Ctrl_3_2.fq.gz", "fastq fastq", 6731291400.0, 44875276.0, "Ctrl 3 1.fq.gz", "0:150 1:150", "A:1790044747;C:1568544653;G:1569058962;T:1803643038;N:0", 150, 150, null, null, 1790044747, 1568544653, 1569058962, 1803643038, 0, "SRX15620527", "SRS13321063", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.94057, null, 0.06779, null, 0.68162, null, 0.51945, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70184, "SRR19568484", "SRX15620526", "SRS13321060", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "Ctrl 2", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of control", "Ctrl 2", "Ctrl 2", "RNA seq of zebrafish Danio rerio: replicate 2 of control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "Ctrl_2_1.fq.gz Ctrl_2_2.fq.gz", "fastq fastq", 6698026800.0, 44653512.0, "Ctrl 2 1.fq.gz", "0:150 1:150", "A:1795059523;C:1549817920;G:1547008645;T:1806140712;N:0", 150, 150, null, null, 1795059523, 1549817920, 1547008645, 1806140712, 0, "SRX15620526", "SRS13321060", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.93483, null, 0.07839, null, 0.67491, null, 0.52108, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [70185, "SRR19568485", "SRX15620525", "SRS13321061", "SRP378839", "PRJNA846550", "The mechanism of AHR mediated disturbance of lipid metabolism in dioxin induced cardiac development injury in zebrafish", "PRJNA846550", "Other", "Dioxin like environmental pollutants are chemical substances with persistent ability to cause environmental damage  which have a vital impact on the growth and development of human and other organisms. Previous studies have confirmed that dioxin like environmental pollutants are cardiotoxic  but the molecular mechanism is still unclear.", null, null, null, null, "Ctrl 1", null, "strain:AB|age:5 dpf|dev stage:5 dpf|sex:not determined|tissue:heart|id:1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA seq of zebrafish Danio rerio: larval heart of control", "Ctrl 1", "Ctrl 1", "RNA seq of zebrafish Danio rerio: replicate 1 of control", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP378839", null, null, "Ctrl_1_1.fq.gz Ctrl_1_2.fq.gz", "fastq fastq", 6735053100.0, 44900354.0, "Ctrl 1 1.fq.gz", "0:150 1:150", "A:1769863183;C:1592773959;G:1591379310;T:1781036648;N:0", 150, 150, null, null, 1769863183, 1592773959, 1591379310, 1781036648, 0, "SRX15620525", "SRS13321061", "SRA1432977", "Shandong University|School of basic medical sciences", "Shandong University", 1, 0.94397, null, 0.05544, null, 0.69749, null, 0.51432, null, 150, null, "B", null, "usable mapping rate", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2022-06-07", "Larval", "Larval", "Heart", "Cardiovascular System"], [76452, "SRR24950188", "SRX20708357", "SRS18001302", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep1", "OE1w1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep1", "OE1w replicate 1", "OE1w replicate 1", "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE1w1_1.fq.gz OE1w1_2.fq.gz", "fastq fastq", 6792141900.0, 22640473.0, "OE1w1 1.fq.gz", "0:150 1:150", "A:1821318465;C:1573309073;G:1556399365;T:1841095017;N:19980", 150, 150, null, null, 1821318465, 1573309073, 1556399365, 1841095017, 19980, "SRX20708357", "SRS18001302", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.92576, 0.91367, 0.07095, 0.07022, 0.74884, 0.75012, 0.52564, 0.52623, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76453, "SRR24950189", "SRX20708356", "SRS18001301", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep3", "CTL1w3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep3", "CTL1w replicate 3", "CTL1w replicate 3", "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "CTL1w3_2.fq.gz CTL1w3_1.fq.gz", "fastq fastq", 6615956700.0, 22053189.0, "CTL1w3 1.fq.gz", "0:150 1:150", "A:1790825663;C:1516487260;G:1497904437;T:1810720169;N:19171", 150, 150, null, null, 1790825663, 1516487260, 1497904437, 1810720169, 19171, "SRX20708356", "SRS18001301", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.93183, 0.91562, 0.07118, 0.07012, 0.7655, 0.7682, 0.53912, 0.52899, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76454, "SRR24950190", "SRX20708355", "SRS18001300", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep2", "CTL1w2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep2", "CTL1w replicate 2", "CTL1w replicate 2", "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "CTL1w2_1.fq.gz CTL1w2_2.fq.gz", "fastq fastq", 6582133800.0, 21940446.0, "CTL1w2 1.fq.gz", "0:150 1:150", "A:1766322301;C:1524014072;G:1506429130;T:1785350030;N:18267", 150, 150, null, null, 1766322301, 1524014072, 1506429130, 1785350030, 18267, "SRX20708355", "SRS18001300", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.93867, 0.92389, 0.06545, 0.06458, 0.76357, 0.76583, 0.53821, 0.54255, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76455, "SRR24950191", "SRX20708354", "SRS18001299", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep1", "CTL1w1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  rep1", "CTL1w replicate 1", "CTL1w replicate 1", "RNA Seq for control littermate hearts at 1 week post 4 HT treatments  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "CTL1w1_2.fq.gz CTL1w1_1.fq.gz", "fastq fastq", 6781172100.0, 22603907.0, "CTL1w1 1.fq.gz", "0:150 1:150", "A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612", 150, 150, null, null, 1804085074, 1581571692, 1567430366, 1828066356, 18612, "SRX20708354", "SRS18001299", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.93867, 0.91921, 0.06237, 0.06146, 0.75858, 0.76246, 0.53972, 0.53069, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76456, "SRR24950192", "SRX20708353", "SRS18001298", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep3", "OE3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep3", "OE replicate 3", "OE replicate 3", "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE3_1.fq.gz OE3_2.fq.gz", "fastq fastq", 6698218800.0, 22327396.0, "OE3 1.fq.gz", "0:150 1:150", "A:1810250125;C:1538223397;G:1526099522;T:1823631856;N:13900", 150, 150, null, null, 1810250125, 1538223397, 1526099522, 1823631856, 13900, "SRX20708353", "SRS18001298", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94309, 0.93987, 0.07727, 0.07734, 0.75645, 0.75659, 0.5045, 0.52615, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Adult", "Adult", "Heart", "Cardiovascular System"], [76457, "SRR24950193", "SRX20708352", "SRS18001297", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep2", "OE2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep2", "OE replicate 2", "OE replicate 2", "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE2_2.fq.gz OE2_1.fq.gz", "fastq fastq", 6714114300.0, 22380381.0, "OE2 1.fq.gz", "0:150 1:150", "A:1821324029;C:1535274751;G:1521032470;T:1836469467;N:13583", 150, 150, null, null, 1821324029, 1535274751, 1521032470, 1836469467, 13583, "SRX20708352", "SRS18001297", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.9438, 0.94081, 0.07627, 0.07672, 0.75116, 0.75221, 0.50222, 0.53794, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Adult", "Adult", "Heart", "Cardiovascular System"], [76458, "SRR24950194", "SRX20708351", "SRS18001296", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 2 month post 4 HT treatments  rep1", "OE1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  rep1", "OE replicate 1", "OE replicate 1", "RNA Seq for myocardium specific hey2 overexpressing hearts at 1 month post 4 HT treatments  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE1_2.fq.gz OE1_1.fq.gz", "fastq fastq", 6717241200.0, 22390804.0, "OE1 1.fq.gz", "0:150 1:150", "A:1820907924;C:1536957701;G:1517754438;T:1841608834;N:12303", 150, 150, null, null, 1820907924, 1536957701, 1517754438, 1841608834, 12303, "SRX20708351", "SRS18001296", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94313, 0.94062, 0.07826, 0.07784, 0.75526, 0.7556, 0.52759, 0.53976, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Adult", "Adult", "Heart", "Cardiovascular System"], [76459, "SRR24950195", "SRX20708350", "SRS18001294", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep3", "CTL3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep3", "CTL replicate 3", "CTL replicate 3", "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "CTL3_1.fq.gz CTL3_2.fq.gz", "fastq fastq", 6726357300.0, 22421191.0, "CTL3 1.fq.gz", "0:150 1:150", "A:1851349315;C:1512108580;G:1497745189;T:1865140192;N:14024", 150, 150, null, null, 1851349315, 1512108580, 1497745189, 1865140192, 14024, "SRX20708350", "SRS18001294", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94596, 0.94425, 0.06888, 0.0684, 0.76368, 0.76493, 0.51461, 0.51708, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Adult", "Adult", "Heart", "Cardiovascular System"], [76460, "SRR24950198", "SRX20708347", "SRS18001292", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep3", "OE1w3", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 3|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep3", "OE1w replicate 3", "OE1w replicate 3", "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 3", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE1w3_2.fq.gz OE1w3_1.fq.gz", "fastq fastq", 6593130600.0, 21977102.0, "OE1w3 1.fq.gz", "0:150 1:150", "A:1770061078;C:1529682678;G:1510949508;T:1782338558;N:98778", 150, 150, null, null, 1770061078, 1529682678, 1510949508, 1782338558, 98778, "SRX20708347", "SRS18001292", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.93503, 0.922, 0.06588, 0.06574, 0.7503, 0.75201, 0.52969, 0.53743, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76461, "SRR24950199", "SRX20708346", "SRS18001291", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep2", "OE1w2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:OE1w replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  rep2", "OE1w replicate 2", "OE1w replicate 2", "RNA Seq for myocardium specific hey2 overexpressing heart at 1 week post 4 HT treatments  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "OE1w2_2.fq.gz OE1w2_1.fq.gz", "fastq fastq", 6742724700.0, 22475749.0, "OE1w2 1.fq.gz", "0:150 1:150", "A:1802906309;C:1568304698;G:1553625077;T:1817795677;N:92939", 150, 150, null, null, 1802906309, 1568304698, 1553625077, 1817795677, 92939, "SRX20708346", "SRS18001291", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.93354, 0.91844, 0.06989, 0.0686, 0.74665, 0.74888, 0.52723, 0.52812, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Juvenile", "Juvenile", "Heart", "Cardiovascular System"], [76462, "SRR24950200", "SRX20708345", "SRS18001290", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep2", "CTL2", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 2|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep2", "CTL replicate 2", "CTL replicate 2", "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 2", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", null, null, "CTL2_2.fq.gz CTL2_1.fq.gz", "fastq fastq", 6733756500.0, 22445855.0, "CTL2 1.fq.gz", "0:150 1:150", "A:1852262818;C:1514940822;G:1497196598;T:1869342344;N:13918", 150, 150, null, null, 1852262818, 1514940822, 1497196598, 1869342344, 13918, "SRX20708345", "SRS18001290", "SRA1657339", "East China Normal University|School of Life Sciences", "East China Normal University", 2, 0.94813, 0.94562, 0.07048, 0.06993, 0.76049, 0.76039, 0.51828, 0.52084, 150, 150, "B", "B", "biological fallback assumption", "bgi", "bgi", "unknown", "random_priming", "unknown", "bulk", "unknown", "unknown", null, "China", "2023-06-16", "Adult", "Adult", "Heart", "Cardiovascular System"], [76463, "SRR24950201", "SRX20708344", "SRS18001289", "SRP444408", "PRJNA984676", "RNA Seq analyses of myocardium specific hey2  overexpressing zebrafish hearts and Adv Hey2 infected NRVMs", "PRJNA984676", "Other", "To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction  we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria  we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl.", null, null, null, "RNA Seq for control littermate hearts at 2 month post 4 HT treatments  rep1", "CTL1", null, "strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:3 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL replicate 1|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  rep1", "CTL replicate 1", "CTL replicate 1", "RNA Seq for control littermate hearts at 1 month post 4 HT treatments  replicate 1", null, null, "RNA-Seq", "TRANSCRIPTOMIC", "PCR", "PAIRED", "BGISEQ", "BGISEQ-500", null, "SRP444408", 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"run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], 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tissue_curation_coarse from run_metadata where \"experiment.platform\" = :p0 and \"technology\" = :p1 and \"tissue_curation_coarse\" = :p2 order by rowid limit 101", "params": {"p0": "BGISEQ", "p1": "unknown", "p2": "Cardiovascular System"}}, "facet_results": {"experiment.library_strategy": {"name": "experiment.library_strategy", "type": "column", "hideable": false, "toggle_url": "/metadata/run_metadata.json?experiment.platform=BGISEQ&technology=unknown&tissue_curation_coarse=Cardiovascular+System", "results": [{"value": "RNA-Seq", "label": "RNA-Seq", "count": 55, "toggle_url": "http://metadata.rnaquarium.org/metadata/run_metadata.json?experiment.platform=BGISEQ&technology=unknown&tissue_curation_coarse=Cardiovascular+System&experiment.library_strategy=RNA-Seq", "selected": false}], "truncated": false}, "experiment.library_source": {"name": "experiment.library_source", "type": "column", "hideable": false, "toggle_url": 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