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Together  we provide a dataset and a framework to systematically dissect the role of transcription factors during the zebrafish embryonic development.", null, null, null, "TDR118", "TDR118 16hpf EKW NA none 10xmultiome", null, "strain:EKW|dev stage:15 somites 16 hpf|collection date:2023 06 23|geo loc name:USA: San Francisco|sex:N/A|tissue:organism|BioSampleModel:Model organism or animal", null, null, null, null, null, null, null, null, "TDR118 16hpf RNA", "TDR118 16hpf RNA EKW NA none 10xmultiome", "TDR118 16hpf RNA EKW NA none 10xmultiome", "10x multiome nuc seq", null, null, "RNA-Seq", "TRANSCRIPTOMIC SINGLE CELL", "cDNA", "PAIRED", "ILLUMINA", "Illumina NovaSeq 6000", null, "SRP534298", null, null, "TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L001_I1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L001_I2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L001_R1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L001_R2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L002_I1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L002_I2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L002_R1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L002_R2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L003_I1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L003_I2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L003_R1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L003_R2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L004_I1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L004_I2_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L004_R1_001.fastq.gz TDR118_16hpf_RNA_EKW_NA_none_10xmultiome_S1_L004_R2_001.fastq.gz", "fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq", null, null, "TDR118 16hpf RNA EKW NA none 10xmultiome S1 L001 I1 001.fastq.gz", null, null, null, null, null, null, null, null, null, null, null, "SRX26181400", null, "SRA1977819", "Chan Zuckerberg Biohub San Francisco|Computational Biology", "Chan Zuckerberg Biohub San Francisco", null, null, null, null, null, null, null, null, null, null, null, null, null, null, "illumina", "novaseq_era", "unknown", "cdna_unspecified", "unknown", "sc", "single_cell_droplet", "10x", null, "United States", "2024-09-23", "Segmentation", "Embryo", "Undetermined", "Embryo Imprecise"]], "truncated": false, "filtered_table_rows_count": 7, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "run.accession", "experiment.accession", "sample.accession", "study.accession", "bioproject", "study.title", "study.alias", "study.type", "study.abstract", "study.attributes", "study.PMIDs", "sample.description", "sample.title", "sample.alias", "sample.centername", "sample.attributes", "GEOsample.title", "GEOsample.dataprocessing", "GEOsample.source", "GEOsample.treatmentprotocol", "GEOsample.extractprotocol", "GEOsample.growthprotocol", "GEOsample.characteristics", "GEOsample.accession", "experiment.title", "experiment.alias", "experiment.library_name", "experiment.design_description", "experiment.library_construction_protocol", "experiment.attributes", "experiment.library_strategy", "experiment.library_source", "experiment.library_selection", "experiment.library_layout", "experiment.platform", "experiment.instrument_model", "experiment.spot_descriptor", "experiment.study_ref", "run.title", "run.attributes", "run.filename", "run.semantic_name", "run.total_bases", "run.total_spots", "run.alias", "run.read_lengths", "run.base_counts", "run.r1_length", "run.r2_length", "run.r3_length", "run.r4_length", "run.Acount", "run.Ccount", "run.Gcount", "run.Tcount", "run.Ncount", "run.experiment", "run.pool_member", "submission.accession", "submission.srasource", "submission.bioprojectsource", "seqdetective.n_mates", "seqdetective.mapping_rate.mate1", "seqdetective.mapping_rate.mate2", "seqdetective.nofeature_rate.mate1", "seqdetective.nofeature_rate.mate2", "seqdetective.sparsity.mate1", "seqdetective.sparsity.mate2", "seqdetective.pos_strand_rate.mate1", "seqdetective.pos_strand_rate.mate2", "seqdetective.readlen.mate1", "seqdetective.readlen.mate2", "seqdetective.judgement.mate1", "seqdetective.judgement.mate2", "seqdetective.judgement.reason", "platform_family", "instrument_generation", "read_bias", "selection_class", "prep_kit", "sc_or_bulk", "tech_class", "technology", "tech_variant", "submission.bioprojectsource.country", "earliest_date", "devstage_curation", "devstage_curation_coarse", "tissue_curation", "tissue_curation_coarse"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, [run.accession], [experiment.accession], [sample.accession], [study.accession], bioproject, [study.title], [study.alias], [study.type], [study.abstract], [study.attributes], [study.PMIDs], [sample.description], [sample.title], [sample.alias], [sample.centername], [sample.attributes], [GEOsample.title], [GEOsample.dataprocessing], [GEOsample.source], [GEOsample.treatmentprotocol], [GEOsample.extractprotocol], [GEOsample.growthprotocol], [GEOsample.characteristics], [GEOsample.accession], [experiment.title], [experiment.alias], [experiment.library_name], [experiment.design_description], [experiment.library_construction_protocol], [experiment.attributes], [experiment.library_strategy], [experiment.library_source], [experiment.library_selection], [experiment.library_layout], [experiment.platform], [experiment.instrument_model], [experiment.spot_descriptor], [experiment.study_ref], [run.title], [run.attributes], [run.filename], [run.semantic_name], [run.total_bases], [run.total_spots], [run.alias], [run.read_lengths], [run.base_counts], [run.r1_length], [run.r2_length], [run.r3_length], [run.r4_length], [run.Acount], [run.Ccount], [run.Gcount], [run.Tcount], [run.Ncount], [run.experiment], [run.pool_member], [submission.accession], [submission.srasource], [submission.bioprojectsource], [seqdetective.n_mates], [seqdetective.mapping_rate.mate1], [seqdetective.mapping_rate.mate2], [seqdetective.nofeature_rate.mate1], [seqdetective.nofeature_rate.mate2], [seqdetective.sparsity.mate1], [seqdetective.sparsity.mate2], [seqdetective.pos_strand_rate.mate1], [seqdetective.pos_strand_rate.mate2], [seqdetective.readlen.mate1], [seqdetective.readlen.mate2], [seqdetective.judgement.mate1], [seqdetective.judgement.mate2], [seqdetective.judgement.reason], platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, [submission.bioprojectsource.country], earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse from run_metadata where \"experiment.library_source\" = :p0 and \"tissue_curation_coarse\" = :p1 order by rowid limit 101", "params": {"p0": "TRANSCRIPTOMIC SINGLE CELL", "p1": "Embryo Imprecise"}}, "facet_results": 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